BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0440.0002.p
         (104 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B4UZ38.1 B4UZ38_9ACTO Transposase                                      99   9e-20
Q9ACY8.1 Q9ACY8_STRCO Probable transposase                             99   1e-19
B5H6A1.1 B5H6A1_STRPR IS630 family transposase                         98   2e-19
B4UXW3.1 B4UXW3_9ACTO Transposase                                      97   5e-19
B5I4D8.1 B5I4D8_9ACTO Transposase                                      95   2e-18

>B4UZ38.1 B4UZ38_9ACTO Transposase
          Length = 370

 Score = 99.4 bits (246), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 58/92 (63%)

Query: 9   GLSICSPLDNFSPHPHHKVKAWASKNNVELTFTPTYASWLNRIECHFGPLRKFVLEGSDF 68
           G  I   LDN S H + +++ WA++N VEL FTPTYASW N IE HFGPLR+F L  S+ 
Sbjct: 260 GAPIYVILDNLSAHLNWRIRRWAARNKVELCFTPTYASWANPIEAHFGPLRQFTLANSNH 319

Query: 69  AKHQDLALAIQAYLRWRNKNKRKAIILREQNK 100
             H     A+ AYLRWRNKN R   +L  Q +
Sbjct: 320 PNHTVQTRALHAYLRWRNKNARHPDVLAAQRR 351


>Q9ACY8.1 Q9ACY8_STRCO Probable transposase
          Length = 374

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 55/92 (59%)

Query: 9   GLSICSPLDNFSPHPHHKVKAWASKNNVELTFTPTYASWLNRIECHFGPLRKFVLEGSDF 68
           G  I   LDN S H   + +AWA+KN VEL FTPTYASW N I  HFGPLR+F +  S  
Sbjct: 261 GAPIYVILDNLSAHKGARTRAWATKNRVELCFTPTYASWANPIAAHFGPLRQFTVANSHH 320

Query: 69  AKHQDLALAIQAYLRWRNKNKRKAIILREQNK 100
             H     A+ AYLRWRNKN R   +L  Q K
Sbjct: 321 RSHPTQTRALHAYLRWRNKNARHPEVLAAQRK 352


>B5H6A1.1 B5H6A1_STRPR IS630 family transposase
          Length = 231

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 56/95 (58%)

Query: 9   GLSICSPLDNFSPHPHHKVKAWASKNNVELTFTPTYASWLNRIECHFGPLRKFVLEGSDF 68
           G  I   LDN S H   K++ WA KN VEL FTPTYASW N IE HFGPLR+F +  S  
Sbjct: 120 GAPIYVILDNLSAHKGEKIRCWARKNRVELCFTPTYASWANPIEAHFGPLRQFTIANSHH 179

Query: 69  AKHQDLALAIQAYLRWRNKNKRKAIILREQNKIKV 103
             H     A+ AYLRWRNKN R   +L  Q + + 
Sbjct: 180 GNHTVQTRALHAYLRWRNKNARHPDVLAAQRRERA 214


>B4UXW3.1 B4UXW3_9ACTO Transposase
          Length = 391

 Score = 96.7 bits (239), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/92 (50%), Positives = 54/92 (58%)

Query: 9   GLSICSPLDNFSPHPHHKVKAWASKNNVELTFTPTYASWLNRIECHFGPLRKFVLEGSDF 68
           G  I   LDN S H    ++ WA KN VEL FTPTYASW N IE HFGPLR+F +  S+ 
Sbjct: 278 GAPIYVILDNLSAHKGETIRRWAKKNRVELCFTPTYASWANPIEAHFGPLRQFTIANSNH 337

Query: 69  AKHQDLALAIQAYLRWRNKNKRKAIILREQNK 100
             H     A+ AYLRWRN N R   +L  Q +
Sbjct: 338 RNHTVQTRALHAYLRWRNANARHPDVLAAQRR 369


>B5I4D8.1 B5I4D8_9ACTO Transposase
          Length = 391

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/92 (48%), Positives = 53/92 (57%)

Query: 9   GLSICSPLDNFSPHPHHKVKAWASKNNVELTFTPTYASWLNRIECHFGPLRKFVLEGSDF 68
           G  I   +DN S H    ++ WA KN VEL FTPTYASW N IE HFGPLR+F +  S  
Sbjct: 278 GAPIYVIMDNLSAHKGTDIRRWAKKNKVELCFTPTYASWANPIEAHFGPLRQFTIADSHH 337

Query: 69  AKHQDLALAIQAYLRWRNKNKRKAIILREQNK 100
             H     A+ AYLRWRN N R   +L  + K
Sbjct: 338 PNHSAQTRALHAYLRWRNANARHRDVLAAERK 369


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 657,719,139
Number of extensions: 23952558
Number of successful extensions: 46934
Number of sequences better than 1.0e-05: 71
Number of HSP's gapped: 47008
Number of HSP's successfully gapped: 71
Length of query: 104
Length of database: 3,060,696,203
Length adjustment: 72
Effective length of query: 32
Effective length of database: 2,382,383,123
Effective search space: 76236259936
Effective search space used: 76236259936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)