BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0438.0006.p (497 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ20.1 B3KJ20_9BACI PHP domain protein 371 e-100 B1DHN2.1 B1DHN2_9BACL PHP domain protein 283 3e-74 C0ZGT5.1 C0ZGT5_BREBN Putative uncharacterized protein 278 1e-72 C0ZIZ9.1 C0ZIZ9_BREBN Putative acetyltransferase 253 3e-65 B0K9M6.1 B0K9M6_THEP3 PHP C-terminal domain protein 228 1e-57 >B3KJ20.1 B3KJ20_9BACI PHP domain protein Length = 288 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/273 (65%), Positives = 220/273 (80%) Query: 219 ADLHTHTLASDGMQSPAENVRLAHEKGLAAVAITDHDTVAGVAEALEAGRKYGITVVPGV 278 DLH+HT ASDGM +P+ENV+LA+E+GL A+AITDHDTVAG+ EAL+AG + I VVPGV Sbjct: 10 CDLHSHTQASDGMNTPSENVQLAYERGLGALAITDHDTVAGIEEALQAGERLNIIVVPGV 69 Query: 279 EISTRAGGKEIHVLGYYMDTQQELFLSRLAEQRDTRAQRNEAIIAKLQALGIAITMDQVT 338 EIST AGG +IHVLGYY+D + +FL RLA R TR +RNE I+AKL+ LGI +TM++V Sbjct: 70 EISTMAGGTDIHVLGYYVDHRDPVFLERLAALRRTREKRNEKILAKLRELGIELTMEEVI 129 Query: 339 AGIGRELKPDESVGRPHIADELVRLGAAVDMRDAFDKYLAEGAAAFVSPPRITPELACEW 398 A +GR L+PDES+GRPHIAD LV G A+D+RDAFD+YLA+GAAA+V PRI P+ ACEW Sbjct: 130 AVLGRPLEPDESIGRPHIADALVHKGHALDLRDAFDRYLAQGAAAYVPQPRIHPKEACEW 189 Query: 399 IAEAGGAAVLAHPGIYGDDELVRSIIERSALRGIEAYHSDHSPADAERYLALAEEFGLLV 458 I EAGG VLAHPG+YGDD LVR++IE S +GIE YHSDH ++ ERYLA+AEE+G +V Sbjct: 190 IREAGGVPVLAHPGLYGDDALVRTVIEESGFKGIEVYHSDHGVSEEERYLAMAEEYGFIV 249 Query: 459 TGGSDFHGARQGVVFHGEIGSVSVPVGVLEQLR 491 T GSD+HG RQG VFHG+IGS V VL+QL+ Sbjct: 250 TAGSDYHGQRQGQVFHGDIGSRQVSTQVLDQLQ 282 >B1DHN2.1 B1DHN2_9BACL PHP domain protein Length = 286 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 162/283 (57%), Positives = 196/283 (69%), Gaps = 11/283 (3%) Query: 217 GRADLHTHTLASDGMQSPAENVRLAHEKGLAAVAITDHDTVAGVAEALEAGRKYGITVVP 276 G+ADLH HT ASDG PA V A GLAAVAITDHDT+AGV EAL AG+K GITVVP Sbjct: 4 GKADLHNHTTASDGTMPPAAVVARAKAAGLAAVAITDHDTMAGVEEALAAGQKLGITVVP 63 Query: 277 GVEISTRAGGKEIHVLGYYMDTQQELFLSRLAEQRDTRAQRNEAIIAKLQALGIAITM-- 334 GVE+ST A G+EIH+L YY D + EL+ RLA R TR RNE I+ L LGI +TM Sbjct: 64 GVELSTIADGREIHILAYYPDWRNELWQERLAGLRATRGTRNEMIVEWLVQLGIPVTMQE 123 Query: 335 ------DQVTAGIGRELKPDESVGRPHIADELVRLGAAVDMRDAFDKYLAEGAAAFVSPP 388 +Q AG GR +++GRPHIA+ L+R GA M +AFD+YL E AA+V+PP Sbjct: 124 VEQIAAEQALAGGGR--GKGKTIGRPHIAELLIRKGAVATMAEAFDRYLGEAGAAYVNPP 181 Query: 389 RITPELACEWIAEAGGAAVLAHPGIYGDDELVRSIIERSALRGIEAYHSDHSPADAERYL 448 RI P A EWI EAGG +V+AHPG+YG D+LV +I + ++GIE YHSDH P + RY Sbjct: 182 RIHPFEAVEWIREAGGTSVIAHPGLYGRDDLVERLIAK-GVQGIEVYHSDHGPEEERRYA 240 Query: 449 ALAEEFGLLVTGGSDFHGARQGVVFHGEIGSVSVPVGVLEQLR 491 LA GL++TGGSDFHG RQG +FHGEIGS +V VL+QLR Sbjct: 241 ELARNHGLIMTGGSDFHGERQGEIFHGEIGSRTVDAAVLDQLR 283 >C0ZGT5.1 C0ZGT5_BREBN Putative uncharacterized protein Length = 281 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 145/273 (53%), Positives = 191/273 (69%), Gaps = 4/273 (1%) Query: 219 ADLHTHTLASDGMQSPAENVRLAHEKGLAAVAITDHDTVAGVAEALEAGRKYGITVVPGV 278 ADLHTHT ASDG PAENVRLA E GLAA+AITDHDTVAG+ EA+EA R G+ ++PGV Sbjct: 5 ADLHTHTKASDGTCEPAENVRLAKEAGLAALAITDHDTVAGIPEAMEAARALGVEIIPGV 64 Query: 279 EISTRAGGKEIHVLGYYMDTQQELFLSRLAEQRDTRAQRNEAIIAKLQALGIAITMDQVT 338 E+S+ G++IHVLGY++ + F RL R+TR +RN+ +IA+LQ LGI I++++V Sbjct: 65 EVSSVGKGQDIHVLGYFVPYEDPAFEERLFRLRETRHERNQLLIARLQELGIDISLEKVY 124 Query: 339 AGIGRELKPDESVGRPHIADELVRLGAAVDMRDAFDKYLAEGAAAFVSPPRITPELACEW 398 R+ D+++GRPHIA+EL+ LG + +AFDKYL +G AA+V+PPRITP+ A Sbjct: 125 R---RKQGTDKNIGRPHIAEELMELGVVSTIAEAFDKYLGKGGAAYVNPPRITPQEAITM 181 Query: 399 IAEAGGAAVLAHPGIYGDDELVRSIIERSALRGIEAYHSDHSPADAERYLALAEEFGLLV 458 I EAGG AVLAHPG+Y DDELV+ +I L GIE H D+ RY A ++G++V Sbjct: 182 IKEAGGVAVLAHPGLYDDDELVQELI-VFGLDGIEVNHPDNDEVQKMRYSKWAAQYGMVV 240 Query: 459 TGGSDFHGARQGVVFHGEIGSVSVPVGVLEQLR 491 TGGSDFHG R FH +GS + + +EQLR Sbjct: 241 TGGSDFHGWRGEEPFHAMLGSHTAGMDAVEQLR 273 >C0ZIZ9.1 C0ZIZ9_BREBN Putative acetyltransferase Length = 189 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/186 (66%), Positives = 148/186 (79%), Gaps = 2/186 (1%) Query: 1 MAVLLKGEKVTLRDLTEEDIRTLYYYEFEAEDREHLLWNGPYGTQEWESYETF--APKFA 58 M + L+GEKV LRD+ ED+ T+YY+++EAEDREHL WNGPY + + E + P+ Sbjct: 1 MRIHLQGEKVVLRDIRAEDLDTIYYWKYEAEDREHLNWNGPYKPLDPYTKEEYRALPRSQ 60 Query: 59 EILALTYTGEPRSRLVVEIDGQLKGTVGRYWVSKVTNWFEIGIVLFDSRDWSGGYGTEAF 118 E LAL T PR+ L++EIDG+LKG+VGRYWVS+ TNW EIGIV++DSR W GYG EAF Sbjct: 61 ESLALVGTDAPRTELIIEIDGELKGSVGRYWVSEETNWCEIGIVIYDSRYWQNGYGREAF 120 Query: 119 RMWMGYLFDSLDTVRLGIGTWSGNVRMMGLAAKCGMIEEARVRKARIVRGEYYDAIKMGI 178 RMW+ YLF +DTVRLGIGTWSGN RM+ LAA GM+EEARVRKARIVRGEYYDAIKMGI Sbjct: 121 RMWIDYLFTHMDTVRLGIGTWSGNERMIKLAAHMGMVEEARVRKARIVRGEYYDAIKMGI 180 Query: 179 LREEWE 184 LREEWE Sbjct: 181 LREEWE 186 >B0K9M6.1 B0K9M6_THEP3 PHP C-terminal domain protein Length = 278 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 111/248 (44%), Positives = 160/248 (64%), Gaps = 6/248 (2%) Query: 219 ADLHTHTLASDGMQSPAENVRLAHEKGLAAVAITDHDTVAGVAEALEAGRKYGITVVPGV 278 ADLH H+ ASDG SP+E VRLA E GL+ +++TDHDTV G+ EA+EA KY I V+PG+ Sbjct: 3 ADLHMHSKASDGTNSPSEVVRLAKEHGLSCISLTDHDTVDGLEEAMEASAKYEIEVIPGI 62 Query: 279 EISTRAGGKEIHVLGYYMDTQQELFLSRLAEQRDTRAQRNEAIIAKLQALGIAITMDQVT 338 E + +E+H+LGY+++ + + F +L E + R R +AI+ KL LGI I+++ V Sbjct: 63 EFNCYYQNQEVHILGYFINYKDKKFFEKLEEMKKLRNDRAKAILKKLNELGIDISIEDVL 122 Query: 339 AGIGRELKPDESVGRPHIADELVRLGAAVDMRDAFDKYLAEGAAAFVSPPRITPELACEW 398 E ++ +GRPHIA +V+ +++AF+KY+ GA A+V RITP A Sbjct: 123 -----EFTSEKFIGRPHIARAMVKKNYVESVKEAFEKYIGVGAPAYVERYRITPFEAINL 177 Query: 399 IAEAGGAAVLAHPGIYGDDELVRSIIERSALRGIEAYHSDHSPADAERYLALAEEFGLLV 458 I E GG VLAHPG+ DD ++ + + L GIE YHS H+ D E+YL A+++ L++ Sbjct: 178 ILENGGVTVLAHPGLLQDDNIIEELAPK-GLIGIEVYHSKHTTEDVEKYLNKAKKYKLII 236 Query: 459 TGGSDFHG 466 TGGSDFHG Sbjct: 237 TGGSDFHG 244 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,082,833,369 Number of extensions: 133350399 Number of successful extensions: 347765 Number of sequences better than 1.0e-05: 1098 Number of HSP's gapped: 346020 Number of HSP's successfully gapped: 1101 Length of query: 497 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 357 Effective length of database: 1,741,754,103 Effective search space: 621806214771 Effective search space used: 621806214771 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)