BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0039.p (264 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KH96.1 B3KH96_9BACI Putative uncharacterized protein 356 1e-96 B1HQM3.1 B1HQM3_LYSSC Putative uncharacterized protein 296 1e-78 A3IFX3.1 A3IFX3_9BACI Putative uncharacterized protein 292 2e-77 C0ZD93.1 C0ZD93_BREBN Putative uncharacterized protein 256 1e-66 A4Y6L4.1 A4Y6L4_SHEPC Putative uncharacterized protein 177 6e-43 >B3KH96.1 B3KH96_9BACI Putative uncharacterized protein Length = 264 Score = 356 bits (914), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 169/264 (64%), Positives = 198/264 (75%) Query: 1 MDNKAKKILMNTFWTSSGWKSSPAAFTGEDFDYAKSKGFMFDPVTITHDEIVLRLHELHQ 60 MD KAKK+L+ TFW+SSGWKSSP F GEDFDYAKS MFDP+TI HDE++ RLH LH+ Sbjct: 1 MDKKAKKVLLQTFWSSSGWKSSPLPFVGEDFDYAKSMRLMFDPITIGHDELIQRLHSLHK 60 Query: 61 TITKERVAAAFLHSLSTKKVHXXXXXXXXXXXXXXPVHTYGERSSARPNHSSCRDCNFHR 120 T+TKERVAAAFLHSLST++VH P+H Y ER SA PN+SSC DCN Sbjct: 61 TVTKERVAAAFLHSLSTRQVHLRSALSSWALTSRLPLHQYEERRSAMPNYSSCGDCNHAG 120 Query: 121 LMSDREYINQDLNVLNFERVKWGGIRLNWLLYCWMDLELFSKEEGFEVTTEDAAILSGML 180 L SDR Y+N DLNVLNFERVKWGGIRLN LLYCW+DLEL S EEG V ED AIL ++ Sbjct: 121 LQSDRNYVNADLNVLNFERVKWGGIRLNQLLYCWLDLELLSHEEGLTVDDEDIAILRKLM 180 Query: 181 EAIRDCADHESARMLEKRWKEVIPSSKNERDVIMEIWGYAGLPVPRDTPRKRRGGSHDFN 240 A+ CA+ ES R LEKR K+V+PSSK+ERDV+MEI GYAG+ VP+DTPR R DF Sbjct: 181 TAVDGCAESESPRHLEKRLKDVLPSSKHERDVLMEILGYAGVLVPKDTPRTRPRRDDDFF 240 Query: 241 SVAEWQGDDGYSQEAVELYFGAFL 264 S++EWQG DGYS EA++ YFG +L Sbjct: 241 SMSEWQGSDGYSTEALQFYFGEYL 264 >B1HQM3.1 B1HQM3_LYSSC Putative uncharacterized protein Length = 266 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 143/266 (53%), Positives = 181/266 (68%), Gaps = 2/266 (0%) Query: 1 MDNKAKKILMNTFWTSSGWKSSPAAFTGEDFDYAKSKGFMFDPVTITHDEIVLRLHELH- 59 MD KAKKILM T+W S W+ +T EDF YAK G MFD +TI+HDE + RL +LH Sbjct: 1 MDQKAKKILMQTYWQSGRWRDGEYTYTEEDFQYAKRMGLMFDRLTISHDECIQRLRQLHD 60 Query: 60 QTITKERVAAAFLHSLSTKKVHXXXXXXXXXXXXXXPVHTYGERSSARPNHSSCRDCNFH 119 + ITK+ V AFLHSLST+KV+ P+HTY ER ++S+C CN H Sbjct: 61 EVITKDLVVRAFLHSLSTRKVYLRSALSSWALTAQLPIHTYHERPEELVSYSACGFCNEH 120 Query: 120 RLMSDREYINQDLNVLNFERVKWGGIRLNWLLYCWMDLELFSKE-EGFEVTTEDAAILSG 178 +LMS+ +YIN+D+NVLNFERVKWGG+RLNWL+YC +DLE KE E V D I+ Sbjct: 121 KLMSNEDYINEDVNVLNFERVKWGGVRLNWLVYCLLDLECLIKEQESLIVCAADIEIVKQ 180 Query: 179 MLEAIRDCADHESARMLEKRWKEVIPSSKNERDVIMEIWGYAGLPVPRDTPRKRRGGSHD 238 MLEAI+ C D ++AR LEKRWK+V S++ ERD +MEIWGYAGL V D RK RG D Sbjct: 181 MLEAIKSCKDTDAARQLEKRWKDVFKSNQYERDAVMEIWGYAGLLVSTDDYRKERGRGTD 240 Query: 239 FNSVAEWQGDDGYSQEAVELYFGAFL 264 F ++A W+G DGYS+E V+ YFG++L Sbjct: 241 FLAMATWRGQDGYSEEKVKFYFGSYL 266 >A3IFX3.1 A3IFX3_9BACI Putative uncharacterized protein Length = 266 Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 142/266 (53%), Positives = 177/266 (66%), Gaps = 2/266 (0%) Query: 1 MDNKAKKILMNTFWTSSGWKSSPAAFTGEDFDYAKSKGFMFDPVTITHDEIVLRLHELHQ 60 MD KAKKILM TFW S W+ +T EDF YAK G MFD +TI+HDE + RL +LH Sbjct: 1 MDQKAKKILMQTFWQSGRWRDGEYTYTEEDFQYAKRMGLMFDRLTISHDECIQRLRQLHD 60 Query: 61 -TITKERVAAAFLHSLSTKKVHXXXXXXXXXXXXXXPVHTYGERSSARPNHSSCRDCNFH 119 +TK+ V AFLHSLST+KV+ P+HTY ER ++S+C CN H Sbjct: 61 DRLTKDLVVKAFLHSLSTRKVYLRSALSSWALTAQLPIHTYHERPEELVSYSACGYCNEH 120 Query: 120 RLMSDREYINQDLNVLNFERVKWGGIRLNWLLYCWMDLE-LFSKEEGFEVTTEDAAILSG 178 ++MS+ YIN+DLNVLNFERVKWGG+RLNWL+YC +DLE L ++E V D I Sbjct: 121 KIMSNEYYINEDLNVLNFERVKWGGVRLNWLVYCLLDLECLIQEQESLIVCEADIEIFKQ 180 Query: 179 MLEAIRDCADHESARMLEKRWKEVIPSSKNERDVIMEIWGYAGLPVPRDTPRKRRGGSHD 238 MLEAI+ C D ++AR LEKRWK+V S++ ERD +MEIWGYAGL D RK RG D Sbjct: 181 MLEAIKSCKDMDAARQLEKRWKDVFKSNQYERDAVMEIWGYAGLLESTDDYRKERGRGTD 240 Query: 239 FNSVAEWQGDDGYSQEAVELYFGAFL 264 F S+A W+G DGYS+E V YFG++L Sbjct: 241 FMSMATWRGQDGYSEEKVNFYFGSYL 266 >C0ZD93.1 C0ZD93_BREBN Putative uncharacterized protein Length = 272 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 131/273 (47%), Positives = 172/273 (63%), Gaps = 10/273 (3%) Query: 1 MDNKAKKILMNTFWTSSGWKSSPAAFTGEDFDYAKSKGFMFDPVTITHDEIVLRLHELHQ 60 MD KAK+ILM TFW+S+GWKS P F+G DF+YAKSKG MFDP+TI+H+E + + LH+ Sbjct: 1 MDKKAKQILMKTFWSSNGWKSRPYDFSGADFEYAKSKGLMFDPLTISHEECIDNIIALHE 60 Query: 61 TITKERVAAAFLHSLSTKKVHXXXXXXXXXXXXXXPVHTYGERSSARPN---------HS 111 +TKE+VA AFLHSLST+KV+ HT+ + N + Sbjct: 61 KVTKEQVAIAFLHSLSTRKVYLRSALSSWSLTEHLTAHTFESNAGKYTNPENGTYFAMYG 120 Query: 112 SCRDCNFHRLMSDREYINQDLNVLNFERVKWGGIRLNWLLYCWMDLELFSKEEGFEVTTE 171 C C+ + + Y ++DLNVLNFER+KWGGIRLN+L Y +DLEL SKE+ V E Sbjct: 121 DCHKCDRYYIAGRELYTDEDLNVLNFERIKWGGIRLNYLPYLMLDLELVSKEDNLTVQEE 180 Query: 172 DAAILSGMLEAIRDCADHESARMLEKRWKEVIPSSKNERDVIMEIWGYAGLPVPRDTPRK 231 D AIL +L I ++AR LEKR + V PSSKNERDV MEI AG+ P R Sbjct: 181 DVAILRQVLAIIASSEPTDAARQLEKRLQGVFPSSKNERDVFMEILASAGILAP-SKDRP 239 Query: 232 RRGGSHDFNSVAEWQGDDGYSQEAVELYFGAFL 264 RGG +DF +V W+G+D YS++AV+ +FG +L Sbjct: 240 GRGGKNDFFAVVNWRGEDSYSEQAVQNFFGPWL 272 >A4Y6L4.1 A4Y6L4_SHEPC Putative uncharacterized protein Length = 273 Score = 177 bits (450), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 100/275 (36%), Positives = 147/275 (53%), Gaps = 13/275 (4%) Query: 1 MDNKAKKILMNTFWTSSGWKSSPAAFTGEDFDYAKSKGFMFDPVTITHDEIVLRLHELHQ 60 MD KAKKIL +T+W + S +DF+YAKSKG MF+P++I+HDE + + +L Sbjct: 1 MDKKAKKILFSTYWKNGWIDSKDRVLNADDFEYAKSKGLMFEPISISHDECIASIVDLVA 60 Query: 61 TITKERVAAAFLHSLSTKKVHXXXXXXXXXXXXXXPVHTY-----------GERSSARPN 109 I+K ++A FL SL+++++ P H Y G +S Sbjct: 61 NISKAQIAKGFLSSLTSRRLDLRSSLSSYSMAKHIPAHQYTPVISGTSYKEGIATSHSYT 120 Query: 110 HSSCRDCNFHRLMSDREYINQDLNVLNFERVKWGGIRLNWLLYCWMDLELFSKEEGFEVT 169 S CRD + + Y+N DLNVLNFER+KWGG+R +LY DLE F+ + E T Sbjct: 121 CSICRDVQYG-VGGAEAYVNTDLNVLNFERIKWGGVRHGNILYMLFDLEQFNNTDIPEPT 179 Query: 170 TEDAAILSGMLEAIRDCADHESARMLEKRWKEVIPSSKNERDVIMEIWGYAGLPVPRDTP 229 ++D +L+ I + A + LEKR VI SSK ER +++EI G+ P Sbjct: 180 SDDIFCFKEILKTIENSAPEDYPSTLEKRLATVIKSSKTERQMLIEILASMGVLKPSHYD 239 Query: 230 RKRRGGSHDFNSVAEWQGDDGYSQEAVELYFGAFL 264 R RR G +D+ W+G+D YS+EA+ YF ++ Sbjct: 240 RPRR-GKNDWVFAEYWRGEDKYSREAIGEYFAKYI 273 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.134 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,571,152,467 Number of extensions: 62010597 Number of successful extensions: 208627 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 208600 Number of HSP's successfully gapped: 14 Length of query: 264 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 131 Effective length of database: 1,807,701,208 Effective search space: 236808858248 Effective search space used: 236808858248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)