BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0437.0029.p
         (122 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q92AM3.1 Q92AM3_LISIN Lin1899 protein                                 166   6e-40
Q9EUW5.1 Q9EUW5_LISIN Putative uncharacterized protein                164   2e-39
Q38VP7.1 Q38VP7_LACSS Putative transcriptional regulator, DUF24 ...   144   3e-33
C2L3D6.1 C2L3D6_LACSK Transcriptional regulator                       144   3e-33
C2C023.1 C2C023_LISGR HTH family transcriptional regulator            140   4e-32

>Q92AM3.1 Q92AM3_LISIN Lin1899 protein
          Length = 120

 Score =  166 bits (420), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 92/114 (80%)

Query: 1   MKQYHLGIEATLEIIGGKWKALIICLLMSGAKRTSELQRNIHGISQKVLIQQLRELEEDG 60
           MK Y+LG+EATL+I+GGKWK LIIC L+ G KRT ELQR I  ISQKVL+QQLRELE DG
Sbjct: 1   MKVYNLGVEATLDIMGGKWKPLIICFLVQGTKRTGELQRCIPKISQKVLVQQLRELERDG 60

Query: 61  LVRRHVYQQMPPKVEYSLTEYGVTANKIVDIMCTWGKENIKMRQSQGEDIVLLE 114
           ++ R VY ++PPKVEYS+T YG+T N IVD MC WGKENI +R SQGE + L+E
Sbjct: 61  IIDRTVYNELPPKVEYSITAYGLTLNAIVDTMCQWGKENIALRNSQGEPVTLIE 114


>Q9EUW5.1 Q9EUW5_LISIN Putative uncharacterized protein
          Length = 120

 Score =  164 bits (416), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 91/114 (79%)

Query: 1   MKQYHLGIEATLEIIGGKWKALIICLLMSGAKRTSELQRNIHGISQKVLIQQLRELEEDG 60
           MK Y+LG+EATL+I+GGKWK LIIC L  G KRT ELQR I  ISQKVL+QQLRELE DG
Sbjct: 1   MKVYNLGVEATLDIMGGKWKPLIICFLAQGTKRTGELQRCIPKISQKVLVQQLRELERDG 60

Query: 61  LVRRHVYQQMPPKVEYSLTEYGVTANKIVDIMCTWGKENIKMRQSQGEDIVLLE 114
           ++ R VY ++PPKVEYS+T YG++ N IVD MC WGKENI +R SQGE + L+E
Sbjct: 61  IIDRTVYNELPPKVEYSITAYGLSLNAIVDTMCQWGKENIALRNSQGEPVTLIE 114


>Q38VP7.1 Q38VP7_LACSS Putative transcriptional regulator, DUF24 family
           (Related to MarR/PadR families)
          Length = 124

 Score =  144 bits (362), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 90/112 (80%)

Query: 2   KQYHLGIEATLEIIGGKWKALIICLLMSGAKRTSELQRNIHGISQKVLIQQLRELEEDGL 61
           K Y++G+EAT+EIIGGKWK +I+C L +   R+SEL +NI  ISQKVL QQLRELE DG+
Sbjct: 4   KTYNIGVEATMEIIGGKWKPVILCHLRNQPLRSSELLQNIPKISQKVLTQQLRELEADGI 63

Query: 62  VRRHVYQQMPPKVEYSLTEYGVTANKIVDIMCTWGKENIKMRQSQGEDIVLL 113
           + R +YQ++PP+VEYSL+EYG + NKI++++C WG++NI  RQS GE I +L
Sbjct: 64  INRKIYQEIPPRVEYSLSEYGQSLNKILNLLCLWGEDNIDRRQSAGESINVL 115


>C2L3D6.1 C2L3D6_LACSK Transcriptional regulator
          Length = 124

 Score =  144 bits (362), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 90/112 (80%)

Query: 2   KQYHLGIEATLEIIGGKWKALIICLLMSGAKRTSELQRNIHGISQKVLIQQLRELEEDGL 61
           K Y++G+EAT+EIIGGKWK +I+C L +   R+SEL +NI  ISQKVL QQLRELE DG+
Sbjct: 4   KTYNIGVEATMEIIGGKWKPVILCHLRNQPLRSSELLQNIPKISQKVLTQQLRELEADGI 63

Query: 62  VRRHVYQQMPPKVEYSLTEYGVTANKIVDIMCTWGKENIKMRQSQGEDIVLL 113
           + R +YQ++PP+VEYSL+EYG + NKI++++C WG++NI  RQS GE I +L
Sbjct: 64  INRKIYQEIPPRVEYSLSEYGQSLNKILNLLCLWGEDNIDRRQSAGESINVL 115


>C2C023.1 C2C023_LISGR HTH family transcriptional regulator
          Length = 130

 Score =  140 bits (352), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 92/115 (80%)

Query: 2   KQYHLGIEATLEIIGGKWKALIICLLMSGAKRTSELQRNIHGISQKVLIQQLRELEEDGL 61
           K Y++G+EATLE+IGGKWK +I+C L +G+KRT EL+R I GISQK+L  QLRELE+  +
Sbjct: 5   KVYNIGVEATLEVIGGKWKPVILCHLRTGSKRTGELKRLIPGISQKMLTSQLRELEKSSV 64

Query: 62  VRRHVYQQMPPKVEYSLTEYGVTANKIVDIMCTWGKENIKMRQSQGEDIVLLEDE 116
           ++R VY+++PPKVEYSLTEYG T + I++ +C WG+ ++   + QGED+VL+E +
Sbjct: 65  IKRKVYREVPPKVEYSLTEYGDTLSFILNKLCLWGEAHVDYLRDQGEDVVLIERD 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 706,179,255
Number of extensions: 24500513
Number of successful extensions: 74022
Number of sequences better than 1.0e-05: 2604
Number of HSP's gapped: 73534
Number of HSP's successfully gapped: 2607
Length of query: 122
Length of database: 3,060,696,203
Length adjustment: 88
Effective length of query: 34
Effective length of database: 2,231,646,883
Effective search space: 75875994022
Effective search space used: 75875994022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)