BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0024.p (295 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D782.1 B1D782_9BACL Binding-protein-dependent transport system... 471 e-131 B3K642.1 B3K642_9BACI Binding-protein-dependent transport system... 341 4e-92 B1DGI1.1 B1DGI1_9BACL Binding-protein-dependent transport system... 322 2e-86 A4U8T9.1 A4U8T9_9BACT Sugar permease 296 1e-78 C5C4B0.1 C5C4B0_9MICO Binding-protein-dependent transport system... 293 1e-77 >B1D782.1 B1D782_9BACL Binding-protein-dependent transport systems inner membrane component Length = 315 Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust. Identities = 225/293 (76%), Positives = 260/293 (88%) Query: 2 RKGMFYGLLFTAPAILGFAVFTLGPMIASLVLSLTDYNVFKEQTSFTGLDHYIRLFSGED 61 RK +FYGLLFTAPAILGF ++TLGPMIASL LSLTDYNVFK+ TSF GLD+YI+LFSGED Sbjct: 23 RKALFYGLLFTAPAILGFIIYTLGPMIASLYLSLTDYNVFKDTTSFIGLDNYIKLFSGED 82 Query: 62 ELFYQSLGATFYFVVLRVPAVIILSFAVALLLNLNVKGRAIFRTIIYLPSIVPAVASAMI 121 +LFY+SLG TFYFV+LRVPAVII+SF +A+LLN+NVKGRAIFRTIIYLPSIVPAVA++MI Sbjct: 83 DLFYKSLGTTFYFVLLRVPAVIIISFFLAILLNMNVKGRAIFRTIIYLPSIVPAVAASMI 142 Query: 122 WMWLLNPDLGLINSLLSRLHLPTSGWLYSEESVIPSVVLTTLWGIGSTVIIFLAGLSGIP 181 W+WL+NPDLGL+N L+ LHLPTS WL+ E SVIPS+VLTTLWGIG TVIIFLAGLSGIP Sbjct: 143 WLWLMNPDLGLLNMALNWLHLPTSNWLFGEGSVIPSIVLTTLWGIGGTVIIFLAGLSGIP 202 Query: 182 RQYYEAIEVDGGGWFHRLRHVTIPMVTPTIFFNTIMTIIGSFQVFNEAYILTQGGPNNKS 241 + YYEAI+VDGGGW+ +LRH+T+PM+TPTIFFNTIMTIIGSFQVF+EAYILTQGGPNNKS Sbjct: 203 KSYYEAIDVDGGGWYSKLRHITVPMLTPTIFFNTIMTIIGSFQVFSEAYILTQGGPNNKS 262 Query: 242 LFYVFYLWRTGFRDADMGYASALAWXXXXXXXXXXXXXXRTSKSWVYYEGGER 294 LF+VFYLWRT FRD +MGYASALAW +TSKSWV+YEG ++ Sbjct: 263 LFFVFYLWRTAFRDTEMGYASALAWVLFIIIMIFTVLVFKTSKSWVHYEGEKQ 315 >B3K642.1 B3K642_9BACI Binding-protein-dependent transport systems inner membrane component Length = 310 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 169/285 (59%), Positives = 206/285 (72%), Gaps = 1/285 (0%) Query: 7 YGLLFTAPAILGFAVFTLGPMIASLVLSLTDYNVFKEQTSFTGLDHYIRLFSGEDELFYQ 66 YG LF PAILG +FTLGPM+ SL +S T+Y SF GLD+Y R+F GED+ FY+ Sbjct: 23 YGWLFALPAILGLLIFTLGPMMYSLYMSFTNYTG-SNTPSFIGLDNYKRIFGGEDQYFYK 81 Query: 67 SLGATFYFVVLRVPAVIILSFAVALLLNLNVKGRAIFRTIIYLPSIVPAVASAMIWMWLL 126 SL TFYFV+L VP I+ SF +A+LLN NVKG++IFRT+ YLPSIVP +A + IW+WLL Sbjct: 82 SLSVTFYFVILSVPTGIVYSFLLAILLNQNVKGKSIFRTVFYLPSIVPIIAISFIWLWLL 141 Query: 127 NPDLGLINSLLSRLHLPTSGWLYSEESVIPSVVLTTLWGIGSTVIIFLAGLSGIPRQYYE 186 NPDLGL N LL L LP S W++ E+SV+PS+ L LW G T+IIFLAGL IPR YE Sbjct: 142 NPDLGLANELLRSLGLPGSQWIFGEKSVVPSLALMNLWTTGGTMIIFLAGLQDIPRSLYE 201 Query: 187 AIEVDGGGWFHRLRHVTIPMVTPTIFFNTIMTIIGSFQVFNEAYILTQGGPNNKSLFYVF 246 AIE+DGG ++LRH+TIPM+TPTIFFN IM II FQVF++AY++T GGPNN SLFYVF Sbjct: 202 AIEMDGGSRLNKLRHITIPMMTPTIFFNLIMGIINGFQVFSQAYVMTNGGPNNASLFYVF 261 Query: 247 YLWRTGFRDADMGYASALAWXXXXXXXXXXXXXXRTSKSWVYYEG 291 YL+R F+ + MG ASA+AW RTS WVYYEG Sbjct: 262 YLYREAFQFSRMGSASAIAWVLFAIIMVLTYVVFRTSNKWVYYEG 306 >B1DGI1.1 B1DGI1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 301 Score = 322 bits (826), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 159/288 (55%), Positives = 203/288 (70%), Gaps = 2/288 (0%) Query: 8 GLLFTAPAILGFAVFTLGPMIASLVLSLTDYNVFKEQTSFTGLDHYIRLFSGEDELFYQS 67 G+LF +P I GF +F LGPMIAS + SL++YNV G +Y LF G D LFY+S Sbjct: 15 GILFASPVIAGFLIFVLGPMIASFIFSLSEYNVITP-LKMIGFSNYADLFDGTDPLFYKS 73 Query: 68 LGATFYFVVLRVPAVIILSFAVALLLNLNVKGRAIFRTIIYLPSIVPAVASAMIWMWLLN 127 LG T Y+V+L VP I+L+F VALLLN +KG+A FRT+ Y+P+IVPAVAS+MIW+WL + Sbjct: 74 LGVTAYYVILSVPLQILLAFMVALLLNHPIKGKAFFRTVFYMPTIVPAVASSMIWLWLFD 133 Query: 128 PDLGLINSLLSRLHLPTSGWLYSEESVIPSVVLTTLWGIGSTVIIFLAGLSGIPRQYYEA 187 PDLGL+N LL +P W+YSE +PS+VL +LW IG T++IFLAGL GIP+ YE+ Sbjct: 134 PDLGLLNQLLKVFGIPGLQWIYSENLAVPSLVLMSLWTIGGTMVIFLAGLQGIPKHLYES 193 Query: 188 IEVDGGGWFHRLRHVTIPMVTPTIFFNTIMTIIGSFQVFNEAYILTQGGPNNKSLFYVFY 247 +EVDGGG H+L +TIP++TPTIFFN IM IGSFQVF +AYI+TQGGPNN +LFY +Y Sbjct: 194 VEVDGGGPLHKLFSITIPLMTPTIFFNLIMGFIGSFQVFGQAYIMTQGGPNNATLFYSYY 253 Query: 248 LWRTGFRDADMGYASALAWXXXXXXXXXXXXXXRTSKSWVYYEG-GER 294 L+R F + MG ASA+AW +TS WVY E G+R Sbjct: 254 LYREAFEFSSMGSASAIAWIMFLVILALTLMVFKTSAFWVYSESEGKR 301 >A4U8T9.1 A4U8T9_9BACT Sugar permease Length = 285 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 141/285 (49%), Positives = 199/285 (69%), Gaps = 2/285 (0%) Query: 7 YGLLFTAPAILGFAVFTLGPMIASLVLSLTDYNVFKEQTSFTGLDHYIRLFSGEDELFYQ 66 +G+LF APA+LGF ++ LGP+I SL ++ TD+ + + G ++ ++F+ ED LF + Sbjct: 2 WGILFVAPAVLGFVLWQLGPIIGSLFIAFTDWRL-AGTPQWIGTGNFEKIFA-EDRLFRK 59 Query: 67 SLGATFYFVVLRVPAVIILSFAVALLLNLNVKGRAIFRTIIYLPSIVPAVASAMIWMWLL 126 SLG T Y+ + VP ++++FA+A+LLN ++ +FRTI YLPSIVP +AS+M+W+WL Sbjct: 60 SLGVTVYYSLGSVPLRMLVAFALAVLLNQKIRALPVFRTIFYLPSIVPVIASSMLWLWLF 119 Query: 127 NPDLGLINSLLSRLHLPTSGWLYSEESVIPSVVLTTLWGIGSTVIIFLAGLSGIPRQYYE 186 NPD GL+NS+L L P W+Y+ +SVIP+++L +LW IG +IIFLA L G+PRQ YE Sbjct: 120 NPDFGLLNSILRPLGFPKLQWIYASDSVIPALILMSLWDIGPMMIIFLAALQGVPRQLYE 179 Query: 187 AIEVDGGGWFHRLRHVTIPMVTPTIFFNTIMTIIGSFQVFNEAYILTQGGPNNKSLFYVF 246 A+E+DGG +HR+RH+T+P+VTP I FN I++II + Q F +AYI+T GGPNN SL YV Sbjct: 180 AVEIDGGNAWHRMRHITVPIVTPAILFNLILSIIVAMQTFTQAYIMTDGGPNNNSLLYVL 239 Query: 247 YLWRTGFRDADMGYASALAWXXXXXXXXXXXXXXRTSKSWVYYEG 291 YL+R F + MGYASALAW R+S WVYY G Sbjct: 240 YLYRKAFEQSQMGYASALAWVLFIIIAGLSLFVFRSSSRWVYYGG 284 >C5C4B0.1 C5C4B0_9MICO Binding-protein-dependent transport systems inner membrane component Length = 285 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 143/284 (50%), Positives = 203/284 (71%), Gaps = 2/284 (0%) Query: 9 LLFTAPAILGFAVFTLGPMIASLVLSLTDYNVFKEQTSFTGLDHYIRLFSGEDELFYQSL 68 ++ PAI+GF FTL PMIASL +SLTD+ + F G+++Y+R+FS D F+ SL Sbjct: 1 MMMALPAIIGFVAFTLAPMIASLFISLTDWTI-GAAPQFVGVENYVRMFS-ADSSFFSSL 58 Query: 69 GATFYFVVLRVPAVIILSFAVALLLNLNVKGRAIFRTIIYLPSIVPAVASAMIWMWLLNP 128 AT Y+ + VP II++F VALLLN NV+G+++FR I Y+P+IVP VA++M+W+WL NP Sbjct: 59 WATVYYTLGAVPLSIIVAFVVALLLNANVRGQSVFRVIYYIPAIVPIVANSMLWIWLFNP 118 Query: 129 DLGLINSLLSRLHLPTSGWLYSEESVIPSVVLTTLWGIGSTVIIFLAGLSGIPRQYYEAI 188 D GL+NS L+R+ LP S W+++EE+ +PS++L WG G+ +IFLAGL G+PR YEAI Sbjct: 119 DFGLLNSALARVGLPGSDWIFAEETAVPSLILMATWGFGNIAVIFLAGLQGVPRHLYEAI 178 Query: 189 EVDGGGWFHRLRHVTIPMVTPTIFFNTIMTIIGSFQVFNEAYILTQGGPNNKSLFYVFYL 248 VDGGG + + RH+T+PM+TP IF++ + +IG+ QVF +A ++T+GGPN+ +LF+V+YL Sbjct: 179 SVDGGGAWSKFRHITLPMMTPVIFYSVVTGVIGALQVFVQAAVMTEGGPNDATLFFVYYL 238 Query: 249 WRTGFRDADMGYASALAWXXXXXXXXXXXXXXRTSKSWVYYEGG 292 +RT F + +MGYASALAW R S WVYYE G Sbjct: 239 YRTAFTNNEMGYASALAWILFLIIMAITVLLFRNSNKWVYYEAG 282 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.142 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,753,494,895 Number of extensions: 72318590 Number of successful extensions: 293489 Number of sequences better than 1.0e-05: 5820 Number of HSP's gapped: 283492 Number of HSP's successfully gapped: 5833 Length of query: 295 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 161 Effective length of database: 1,798,280,193 Effective search space: 289523111073 Effective search space used: 289523111073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)