BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0023.p (256 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D781.1 B1D781_9BACL Binding-protein-dependent transport system... 430 e-119 B3K641.1 B3K641_9BACI Binding-protein-dependent transport system... 333 8e-90 A4U8U0.1 A4U8U0_9BACT Sugar permease 312 2e-83 B1DGI0.1 B1DGI0_9BACL Binding-protein-dependent transport system... 312 2e-83 C5C4A9.1 C5C4A9_9MICO Binding-protein-dependent transport system... 305 2e-81 >B1D781.1 B1D781_9BACL Binding-protein-dependent transport systems inner membrane component Length = 276 Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/256 (80%), Positives = 234/256 (91%) Query: 1 MFIIPFVWLVRSSLMNLSQIFTMPPEWIPAPFQWSNFQRALTALPFDTFFKNTLIIVVSV 60 MFI+PF+WL+RSS+M+LSQIF MPP+WIP PF + NF+ ALT +PF TFFKNTLIIV V Sbjct: 21 MFIVPFLWLLRSSVMDLSQIFIMPPQWIPKPFHFENFKEALTVVPFGTFFKNTLIIVAGV 80 Query: 61 LVGTVITSTIGAFGFSRIQWKGRDTVFAILMTSMMLPAAVTMIPSFLGWQALGFYDTLYP 120 L+GTV++STI AFGFSRI+WKGRD VFAILM+SMMLP AVT+IPSF+GW+ LGFYDT YP Sbjct: 81 LLGTVVSSTIAAFGFSRIKWKGRDMVFAILMSSMMLPGAVTLIPSFIGWKELGFYDTFYP 140 Query: 121 LIIPAYFGGGIFNIFLLRQFYLTIPRDFDEAAFVDGASYWQIYTRIIFPLSRSAVIVVAL 180 LI+PAYFGGG+FNIFLLRQFY++IP+DFDEAA VDGA+Y+QIY RI+ PLSRSAVIVVAL Sbjct: 141 LIVPAYFGGGMFNIFLLRQFYMSIPQDFDEAALVDGANYFQIYWRILLPLSRSAVIVVAL 200 Query: 181 FSFLASWNDFMGPLIYLKSDSLFTLALGLQMFQGSYTAQWDLLMAASATVVLPCVIVFLA 240 F+FLASWNDFMGPLIYLKSDS FTLALGLQMFQGSY AQWDLLMAAS VVLPCV+VFL Sbjct: 201 FTFLASWNDFMGPLIYLKSDSRFTLALGLQMFQGSYNAQWDLLMAASTAVVLPCVLVFLV 260 Query: 241 GQRYFLEGITLTGLKG 256 GQR+FLEGITLTGLKG Sbjct: 261 GQRFFLEGITLTGLKG 276 >B3K641.1 B3K641_9BACI Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 333 bits (854), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 152/254 (59%), Positives = 203/254 (79%) Query: 3 IIPFVWLVRSSLMNLSQIFTMPPEWIPAPFQWSNFQRALTALPFDTFFKNTLIIVVSVLV 62 ++P VWL+RSSLMN+ QIF +PP WIP P Q SN+ ALT LPF +F NT IIVV ++ Sbjct: 24 LLPLVWLIRSSLMNMGQIFELPPVWIPRPVQLSNYSEALTILPFGQYFMNTAIIVVFSVL 83 Query: 63 GTVITSTIGAFGFSRIQWKGRDTVFAILMTSMMLPAAVTMIPSFLGWQALGFYDTLYPLI 122 G ++TS+I A+ F+R++W+GR+ VF +L++SMMLP AVT+IP+F+GW +G ++ PLI Sbjct: 84 GVIVTSSISAYSFARMKWRGRNMVFGLLLSSMMLPYAVTLIPTFIGWSKVGLTNSFIPLI 143 Query: 123 IPAYFGGGIFNIFLLRQFYLTIPRDFDEAAFVDGASYWQIYTRIIFPLSRSAVIVVALFS 182 PA+FGGG FNIFLLRQFYL+IPRD DEAA+VDGA + +I+ II PL++ A+IVV LFS Sbjct: 144 APAWFGGGAFNIFLLRQFYLSIPRDLDEAAYVDGAGHLRIFRSIILPLTKPALIVVGLFS 203 Query: 183 FLASWNDFMGPLIYLKSDSLFTLALGLQMFQGSYTAQWDLLMAASATVVLPCVIVFLAGQ 242 FL +WNDF+GPL+YL ++ +TLALGLQ F+G Y+A+W L+MAA+ V+LP +IVF GQ Sbjct: 204 FLTAWNDFLGPLVYLNDETKYTLALGLQQFKGMYSAEWHLMMAAATVVLLPAIIVFFIGQ 263 Query: 243 RYFLEGITLTGLKG 256 RYF+EGITLTG+K Sbjct: 264 RYFIEGITLTGIKA 277 >A4U8U0.1 A4U8U0_9BACT Sugar permease Length = 288 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 149/256 (58%), Positives = 197/256 (76%) Query: 1 MFIIPFVWLVRSSLMNLSQIFTMPPEWIPAPFQWSNFQRALTALPFDTFFKNTLIIVVSV 60 + +IP WLVRSS+M+L QIF PPEWIP+P++W N+ +ALT++PF +F NTL+I+V Sbjct: 33 LMLIPLAWLVRSSVMSLGQIFAFPPEWIPSPWRWENYPQALTSIPFFRYFVNTLVILVPS 92 Query: 61 LVGTVITSTIGAFGFSRIQWKGRDTVFAILMTSMMLPAAVTMIPSFLGWQALGFYDTLYP 120 ++GTVITST+ A+GFSR+QW GRD VF IL+T++MLP AVT+IP+FL W +LG T +P Sbjct: 93 VLGTVITSTLAAYGFSRLQWPGRDIVFGILLTTLMLPYAVTLIPTFLLWASLGLVGTYWP 152 Query: 121 LIIPAYFGGGIFNIFLLRQFYLTIPRDFDEAAFVDGASYWQIYTRIIFPLSRSAVIVVAL 180 L++P +FGGGIF IFLLRQF++T+P++ DEAA +DGAS Q+ +I PLSR A+I V + Sbjct: 153 LVVPHFFGGGIFYIFLLRQFFMTLPKELDEAAIIDGASPPQVLWYVIVPLSRPALITVVI 212 Query: 181 FSFLASWNDFMGPLIYLKSDSLFTLALGLQMFQGSYTAQWDLLMAASATVVLPCVIVFLA 240 F+ L WNDF+ PLIY+ S TLALGL F G YT+QW LLMAAS V+LP +++F Sbjct: 213 FATLFEWNDFLEPLIYINRSSQHTLALGLAEFTGLYTSQWHLLMAASTVVILPVLVLFFF 272 Query: 241 GQRYFLEGITLTGLKG 256 QRYF+EGI LTG KG Sbjct: 273 AQRYFIEGIALTGTKG 288 >B1DGI0.1 B1DGI0_9BACL Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 146/254 (57%), Positives = 196/254 (77%) Query: 3 IIPFVWLVRSSLMNLSQIFTMPPEWIPAPFQWSNFQRALTALPFDTFFKNTLIIVVSVLV 62 + PF WL+RSS M+ S IF +PP WIP + SN++ A+T LPF+ +F NT IIVV + Sbjct: 24 LFPFYWLLRSSFMDQSDIFVIPPIWIPHDWLISNYREAMTILPFNRYFLNTFIIVVLEVS 83 Query: 63 GTVITSTIGAFGFSRIQWKGRDTVFAILMTSMMLPAAVTMIPSFLGWQALGFYDTLYPLI 122 G V++S+I A+ F+R++W GR+ VF +++TSMMLP AVT+IP ++GW LG +T PL Sbjct: 84 GVVLSSSICAYSFARLRWPGRNLVFMVILTSMMLPGAVTLIPQYVGWAKLGATNTFIPLT 143 Query: 123 IPAYFGGGIFNIFLLRQFYLTIPRDFDEAAFVDGASYWQIYTRIIFPLSRSAVIVVALFS 182 +PA+FGGG FN+FLLRQF++TIP++ DEAA VDGA Y++IY+RI+ PL A++VV LFS Sbjct: 144 LPAWFGGGAFNVFLLRQFFMTIPKELDEAALVDGAGYFRIYSRIMLPLLVPALVVVGLFS 203 Query: 183 FLASWNDFMGPLIYLKSDSLFTLALGLQMFQGSYTAQWDLLMAASATVVLPCVIVFLAGQ 242 FL WNDFMGPLIYL + L+TLALGLQ F+G Y AQW L+MAA+ V+LP ++VF GQ Sbjct: 204 FLNGWNDFMGPLIYLSDEKLYTLALGLQTFKGMYNAQWHLMMAATTVVLLPAMLVFFLGQ 263 Query: 243 RYFLEGITLTGLKG 256 +YF+EGI +TGLKG Sbjct: 264 KYFVEGIVMTGLKG 277 >C5C4A9.1 C5C4A9_9MICO Binding-protein-dependent transport systems inner membrane component Length = 300 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 141/254 (55%), Positives = 196/254 (77%) Query: 3 IIPFVWLVRSSLMNLSQIFTMPPEWIPAPFQWSNFQRALTALPFDTFFKNTLIIVVSVLV 62 ++P +WLVRS+LM QIF PPEWIP P W NF ALTA+PF +F NT+II V VLV Sbjct: 47 LLPLIWLVRSALMTSGQIFISPPEWIPDPVAWDNFAGALTAVPFGRYFVNTMIIEVGVLV 106 Query: 63 GTVITSTIGAFGFSRIQWKGRDTVFAILMTSMMLPAAVTMIPSFLGWQALGFYDTLYPLI 122 GT+++ + AF F+R++W+ ++ VF +LMT +MLP AVT+IP+FL WQA+G +T PLI Sbjct: 107 GTLLSCSFAAFSFARLRWRFKNVVFGLLMTGVMLPYAVTLIPTFLFWQAVGAVNTYVPLI 166 Query: 123 IPAYFGGGIFNIFLLRQFYLTIPRDFDEAAFVDGASYWQIYTRIIFPLSRSAVIVVALFS 182 +PA+FG +FNIFLLRQF+L++P + DE+A++DGA+ +Q+Y RI+ PLS+ A++VV +F+ Sbjct: 167 LPAFFGTAVFNIFLLRQFFLSLPYELDESAYIDGANPFQVYWRIVLPLSKPALMVVGIFT 226 Query: 183 FLASWNDFMGPLIYLKSDSLFTLALGLQMFQGSYTAQWDLLMAASATVVLPCVIVFLAGQ 242 FL WND++GPLIYL ++TLA+GL FQG+YTAQW LMAA+ V+LP +++F Q Sbjct: 227 FLGVWNDYLGPLIYLNDSDMYTLAMGLASFQGTYTAQWGYLMAAATVVLLPIILLFAIAQ 286 Query: 243 RYFLEGITLTGLKG 256 +YF+EGI LTGLK Sbjct: 287 KYFVEGIALTGLKN 300 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.144 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,491,259,879 Number of extensions: 59952539 Number of successful extensions: 236757 Number of sequences better than 1.0e-05: 6070 Number of HSP's gapped: 228204 Number of HSP's successfully gapped: 6071 Length of query: 256 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 123 Effective length of database: 1,807,701,208 Effective search space: 222347248584 Effective search space used: 222347248584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)