BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0022.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3J8.1 B3K3J8_9BACI Glycoside hydrolase family 43 513 e-144 B1DB16.1 B1DB16_9BACL Glycoside hydrolase family 43 346 2e-93 A6E6M6.1 A6E6M6_9SPHI Arabinan endo-1,5-alpha-L-arabinosidase A 335 2e-90 C1U461.1 C1U461_9SPHI Beta-xylosidase 329 2e-88 A7V685.1 A7V685_BACUN Putative uncharacterized protein 328 4e-88 >B3K3J8.1 B3K3J8_9BACI Glycoside hydrolase family 43 Length = 294 Score = 513 bits (1320), Expect = e-144, Method: Compositional matrix adjust. Identities = 241/292 (82%), Positives = 262/292 (89%), Gaps = 2/292 (0%) Query: 10 ITNPVIPGWYADPEARTYQGRHWIYATRSFTEYTQQMNLDAFSSVDLIHWNKHDSIIEMK 69 I NP+IPGWYADPEARTY+G+HWIYATRSFTEYT QMNLDAFSS DLIHW KH+ IIEM Sbjct: 3 INNPIIPGWYADPEARTYEGKHWIYATRSFTEYTMQMNLDAFSSDDLIHWEKHEGIIEMA 62 Query: 70 DFPWIWRAVWAPTQIEHQGRHYLVFASNDIQKDGEAGGLEIAVADSPEGPYRGYLGKPLI 129 DFPWIWRAVWAPT IEHQG++YLVFASNDIQ D E GGLEIAVAD PEGPYRGYLGKPL+ Sbjct: 63 DFPWIWRAVWAPTHIEHQGKYYLVFASNDIQSDEETGGLEIAVADRPEGPYRGYLGKPLV 122 Query: 130 DRFIHGAQPIDAHLFKDDDGAVYLFYGGWGHCNVARMNEDMTGFVAFSD--GQTVRSITP 187 D+FIH AQPIDAHLFKD+DG +YL+YGGWGHCNVARMNE+MTGFV +D + RSITP Sbjct: 123 DKFIHQAQPIDAHLFKDEDGTIYLYYGGWGHCNVARMNEEMTGFVPLADDSNEIFRSITP 182 Query: 188 PGYVEGPCMIRKDGLYYLMWSMGGWTNGTYRVAYGVSASPLGPFANEGTILERQEPVAEG 247 GYVEGPCMI+KDGLYYLMWSMGGWTNGTYRVAYGVS SPLGPF NEGTILERQEP+AEG Sbjct: 183 EGYVEGPCMIKKDGLYYLMWSMGGWTNGTYRVAYGVSDSPLGPFKNEGTILERQEPIAEG 242 Query: 248 PGHHGYLHLPDEDEWLIVYHRRIIGDKEPGNRVLCIDRMEFEAGRIKPVIMT 299 PGHHGYLHL ++DEWLIVYHRRIIGD EPG+R LCIDRM G+I+PVIMT Sbjct: 243 PGHHGYLHLQEKDEWLIVYHRRIIGDTEPGHRQLCIDRMRIGNGKIEPVIMT 294 >B1DB16.1 B1DB16_9BACL Glycoside hydrolase family 43 Length = 305 Score = 346 bits (887), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 159/289 (55%), Positives = 210/289 (72%), Gaps = 2/289 (0%) Query: 12 NPVIPGWYADPEARTYQGRHWIYATRSFTEYTQQMNLDAFSSVDLIHWNKHDSIIEMKDF 71 NPV PGWYADPEAR ++GR+WIY T S +Y +Q+ LDAF S DL++W K + +++ +DF Sbjct: 9 NPVFPGWYADPEARIFEGRYWIYPTYS-AKYEEQLYLDAFHSDDLVNWTKVERVLDKEDF 67 Query: 72 PWIWRAVWAPTQIEHQGRHYLVFASNDIQKDGEAGGLEIAVADSPEGPYRGYLGKPLIDR 131 W +AVWAP+ IE G++Y+ F++NDIQ + E GG+ + VAD PEGP+R +GKPLIDR Sbjct: 68 KWADKAVWAPSPIESDGKYYIYFSANDIQSNEELGGIGVGVADRPEGPFRDAIGKPLIDR 127 Query: 132 FIHGAQPIDAHLFKDDDGAVYLFYGGWGHCNVARMNEDMTGFVAFSDGQTVRSITPPGYV 191 F HGAQPID H+F+D+DG VYL+YGGWGHCNV R+ EDM + F DG R +TP YV Sbjct: 128 FHHGAQPIDPHVFRDEDGQVYLYYGGWGHCNVVRLGEDMISLLPFEDGTVYREVTPKDYV 187 Query: 192 EGPCMIRKDGLYYLMWSMGGWTNGTYRVAYGVSASPLGPFANEGTILERQEPVAEGPGHH 251 EGPCMI+++G Y MW+ GGW YRVAY ++ SPLGPF TIL++ VA G GHH Sbjct: 188 EGPCMIKRNGQYVFMWAEGGWGGPHYRVAYALAESPLGPFERIDTILQQDPEVATGAGHH 247 Query: 252 GYLHLPDEDEWLIVYHRRIIGDKEPGNRVLCIDRMEF-EAGRIKPVIMT 299 GYL +PD DE+ IVYHRR + + +RV+CID++ F E I+PV ++ Sbjct: 248 GYLQIPDTDEYYIVYHRRPLTETAANHRVVCIDKLTFNEDNTIRPVKIS 296 >A6E6M6.1 A6E6M6_9SPHI Arabinan endo-1,5-alpha-L-arabinosidase A Length = 325 Score = 335 bits (860), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 153/289 (52%), Positives = 203/289 (70%), Gaps = 2/289 (0%) Query: 12 NPVIPGWYADPEARTYQGRHWIYATRSFTEYTQQMNLDAFSSVDLIHWNKHDSIIEMKDF 71 NPV PGWYADPE + +WIY T S +Y Q+ +DAFSS DL+ W KH+ +++ +F Sbjct: 28 NPVFPGWYADPEGAVFDKTYWIYPTYS-AKYEDQVFMDAFSSRDLVKWKKHERVVDTANF 86 Query: 72 PWIWRAVWAPTQIEHQGRHYLVFASNDIQKDGEAGGLEIAVADSPEGPYRGYLGKPLIDR 131 W +AVWAP+ I+ ++YL+F +NDIQ D E GGL + V+D PEGP++ ++GKPL+D+ Sbjct: 87 KWAKKAVWAPSIIKKDKKYYLLFGANDIQNDNEVGGLGVGVSDKPEGPFKDHIGKPLVDK 146 Query: 132 FIHGAQPIDAHLFKDDDGAVYLFYGGWGHCNVARMNEDMTGFVAFSDGQTVRSITPPGYV 191 F +GAQPID +FKD DG YL+YGGW HCNVA++N+D TGF+ F DG+ + +TP GYV Sbjct: 147 FYNGAQPIDQFVFKDKDGQYYLYYGGWRHCNVAKLNDDFTGFIPFEDGKIFKEVTPEGYV 206 Query: 192 EGPCMIRKDGLYYLMWSMGGWTNGTYRVAYGVSASPLGPFANEGTILERQEPVAEGPGHH 251 EGP M KDG YY MWS GGWT Y VAY V+ SP+GPF IL++ VA G GHH Sbjct: 207 EGPYMFIKDGKYYFMWSEGGWTGPDYSVAYAVADSPMGPFKRIDKILKQDPKVATGAGHH 266 Query: 252 GYLHLPDEDEWLIVYHRRIIGDKEPGNRVLCIDRMEFEA-GRIKPVIMT 299 + P +DE+ IVYHRR +G+ +RV CI++MEF+A G IKPV +T Sbjct: 267 SVIKHPKKDEYYIVYHRRPLGETNGNHRVTCIEKMEFDAEGLIKPVTIT 315 >C1U461.1 C1U461_9SPHI Beta-xylosidase Length = 324 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 158/289 (54%), Positives = 194/289 (67%), Gaps = 2/289 (0%) Query: 12 NPVIPGWYADPEARTYQGRHWIYATRSFTEYTQQMNLDAFSSVDLIHWNKHDSIIEMKDF 71 NPV PGWYADPE + WIY T S Y +Q+++DAFSS DL+ WNKH +II+ Sbjct: 27 NPVFPGWYADPEGIIFNKTFWIYPTFS-APYNKQVHMDAFSSKDLVTWNKHPNIIDTSAV 85 Query: 72 PWIWRAVWAPTQIEHQGRHYLVFASNDIQKDGEAGGLEIAVADSPEGPYRGYLGKPLIDR 131 W RA+WAP+ IE ++YL F +NDIQ D E GG+ +AVAD PEGP++ YLGKPLID+ Sbjct: 86 KWAKRAMWAPSIIEKDKKYYLFFGANDIQNDNEKGGIGVAVADRPEGPFKDYLGKPLIDK 145 Query: 132 FIHGAQPIDAHLFKDDDGAVYLFYGGWGHCNVARMNEDMTGFVAFSDGQTVRSITPPGYV 191 F +GAQPID +FKD DG YLFYGGW HCNVA++ D TGFV F DG R ITP GYV Sbjct: 146 FHNGAQPIDQFVFKDKDGQYYLFYGGWRHCNVAKLKSDFTGFVPFEDGTIFREITPKGYV 205 Query: 192 EGPCMIRKDGLYYLMWSMGGWTNGTYRVAYGVSASPLGPFANEGTILERQEPVAEGPGHH 251 EGP M ++G YY MWS GGWT Y VAY +S SP GPF IL++ VA G GHH Sbjct: 206 EGPFMFIRNGKYYFMWSEGGWTGPDYSVAYAISDSPFGPFERVDKILQQDPKVATGAGHH 265 Query: 252 GYLHLPDEDEWLIVYHRRIIGDKEPGNRVLCIDRMEF-EAGRIKPVIMT 299 + +P +DEW IVYHRR + + + +R CID M F + G I PV +T Sbjct: 266 SVIQVPGKDEWYIVYHRRPLTETDGNHRETCIDVMSFDDKGLINPVKIT 314 >A7V685.1 A7V685_BACUN Putative uncharacterized protein Length = 334 Score = 328 bits (841), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 151/298 (50%), Positives = 201/298 (67%), Gaps = 2/298 (0%) Query: 3 EEHLLKGITNPVIPGWYADPEARTYQGRHWIYATRSFTEYTQQMNLDAFSSVDLIHWNKH 62 EE K NP+ PGWYADPE G+ WIY T S Y +Q +DA+SS DL+HW KH Sbjct: 26 EEVQKKRSGNPIFPGWYADPEGVVLDGKFWIYPTYS-APYDEQTFMDAYSSPDLVHWTKH 84 Query: 63 DSIIEMKDFPWIWRAVWAPTQIEHQGRHYLVFASNDIQKDGEAGGLEIAVADSPEGPYRG 122 ++ ++ PW+ RA+WAP IE R+YL F NDIQ + E GG+ +AVAD+P GP++ Sbjct: 85 PRVLSKENIPWLRRALWAPAVIEANDRYYLFFGGNDIQNNSEIGGIGVAVADNPAGPFKD 144 Query: 123 YLGKPLIDRFIHGAQPIDAHLFKDDDGAVYLFYGGWGHCNVARMNEDMTGFVAFSDGQTV 182 LGKPLID+ ++GAQPID +F+DDDG Y++YGGWGHCN+ +++ D+ G V F DG Sbjct: 145 VLGKPLIDKIVNGAQPIDQFVFRDDDGTYYMYYGGWGHCNIVKLSPDLLGVVPFDDGTVY 204 Query: 183 RSITPPGYVEGPCMIRKDGLYYLMWSMGGWTNGTYRVAYGVSASPLGPFANEGTILERQE 242 + +TP YVEGP M++++G YY MWS GGW + YRVAY ++ SP GPF EG IL++ Sbjct: 205 KEVTPQDYVEGPFMLKRNGKYYFMWSEGGWGSPDYRVAYAIADSPFGPFHREGIILQQDA 264 Query: 243 PVAEGPGHHGYLHLPDEDEWLIVYHRRIIGDKEPGNRVLCIDRMEFE-AGRIKPVIMT 299 VA G GHH + +DEW I+YHRR +G+ +R CIDRM F+ G+IKPV MT Sbjct: 265 GVATGAGHHSVVRGKGKDEWYIIYHRRPLGETAANSRATCIDRMYFDKKGKIKPVRMT 322 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.141 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,191,827,875 Number of extensions: 102100078 Number of successful extensions: 177503 Number of sequences better than 1.0e-05: 551 Number of HSP's gapped: 176327 Number of HSP's successfully gapped: 563 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)