BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0020.p (313 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4G0P8.1 C4G0P8_ABIDE Putative uncharacterized protein 190 2e-46 C0FZM1.1 C0FZM1_9FIRM Putative uncharacterized protein 163 2e-38 C4G856.1 C4G856_9FIRM Putative uncharacterized protein 162 3e-38 C4Z8R0.1 C4Z8R0_9FIRM L-rhamnose operon transcriptional activator 162 5e-38 A6PRU5.1 A6PRU5_9BACT Transcriptional regulator, AraC family 112 5e-23 >C4G0P8.1 C4G0P8_ABIDE Putative uncharacterized protein Length = 314 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 111/319 (34%), Positives = 168/319 (52%), Gaps = 12/319 (3%) Query: 1 MPRKKKPVIEYRHYSLPIDFPVLLLSGERW-----KISDIRS-EHLHFHNHLEIGICYSD 54 M +KK VIE R+Y PI PVL L GE W K +D + E++HFHN +EIG C S Sbjct: 1 MSKKKNSVIELRYYEKPIKEPVLALLGENWIREYGKDTDGKMIENMHFHNLMEIGYCVSG 60 Query: 55 SGIMEIKGEAVPFTAGDVTFIPRYLPHTTYSSPDTASLWSYLFFSPEDLFQHSFKSAYSS 114 G M + GE+ + G+ T IP PH T T W Y+F PE + + +F + Sbjct: 61 EGEMILDGESKVYKEGNFTVIPINFPHNTIGKRGTLGHWEYIFCDPEYILKRAFPNNEPF 120 Query: 115 FEPNLWAVTGKNCILNKEQYPKVYTLATSVVEELKQQKPYYQENAYGXXXXXXXXXXRIH 174 E L + +K++ P++ L S++ E++ +K YY E R+ Sbjct: 121 VENTLKRLNSHVYFCHKDKQPELAGLIRSIMNEMRNKKAYYCEKIIMLCNSLFFEAARMS 180 Query: 175 STNEMLAEQEAEHSLKGDFVISPALEHITKNYMTPITIDSIAGLCHLSTTHFRRKFHEIM 234 + E E K VIS A+ +I KNY + I +A C++S T+FRR F M Sbjct: 181 EV-----DYEVEFEYKDMGVISAAITYIDKNYAEQLRIRDVAESCNMSETNFRRLFSAYM 235 Query: 235 GVAPLDFLSRTRIEEACKQLKSTDHSILSISGQVGFHSISSFNRCFSRLMGESPKQWRKG 294 G APL++ + RI +AC+ +KST S+ I+ +VG+ +S+FNR F ++MGESP +W++ Sbjct: 236 GHAPLEYFNLIRISKACELIKSTMLSMEDIAMKVGYLQMSTFNRNFKKIMGESPYKWKRN 295 Query: 295 -AQAEAQSAKASILEFTGW 312 A E++ A++ GW Sbjct: 296 PANFESKLLNANVSTKKGW 314 >C0FZM1.1 C0FZM1_9FIRM Putative uncharacterized protein Length = 304 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 8/308 (2%) Query: 9 IEYRHYSLPIDFPVLLLSGERWKISDIRSE--HLHFHNHLEIGICYSDSGIMEIKGEAVP 66 +E R Y +P + VL L G+ W I D + +LHFHN +EIG C +G + + E+ P Sbjct: 1 MELRFYEVPQNEYVLALLGDSW-IRDYGHDESNLHFHNLMEIGYCKHGTGELILNEESKP 59 Query: 67 FTAGDVTFIPRYLPHTTYSSPDTA-SLWSYLFFSPEDLFQHSFKSAYSSFEPNLWAVTGK 125 + V+ IP+ PH T S D+ S W YLFF P + Q + + L V K Sbjct: 60 YEPAMVSIIPQNYPHVTISDSDSGPSFWEYLFFDPMVMIQELYPDNPVVQKKILQMVNQK 119 Query: 126 NCILNKEQYPKVYTLATSVVEELKQQKPYYQENAYGXXXXXXXXXXRIHSTNEMLAEQEA 185 ++ + P V L +++E++Q+K + E G R+ + +AE E Sbjct: 120 ALFFHEWENPGVSVLVKMIMDEMRQKKKRFHECVRGLMITLFAELLRMCEND--VAEDEI 177 Query: 186 EHSLKGDFVISPALEHITKNYMTPITIDSIAGLCHLSTTHFRRKFHEIMGVAPLDFLSRT 245 G I+PALE++ Y I ++ +A H+S THFRR F M ++P+D+++ Sbjct: 178 RKK-TGVSQITPALEYVRNEYANNIRVEELAKASHMSETHFRRVFESYMNMSPMDYINLM 236 Query: 246 RIEEACKQLKSTDHSILSISGQVGFHSISSFNRCFSRLMGESPKQWRKGAQA-EAQSAKA 304 R+++AC +K T+ S+ ++ +VGF + S+FNR F + + SP QW+ + E + Sbjct: 237 RVQKACDIMKKTNDSMDVVAQKVGFTTTSTFNRNFKKYLNTSPYQWKISPENYERKLLNY 296 Query: 305 SILEFTGW 312 +I GW Sbjct: 297 NISALKGW 304 >C4G856.1 C4G856_9FIRM Putative uncharacterized protein Length = 311 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 87/316 (27%), Positives = 153/316 (48%), Gaps = 16/316 (5%) Query: 4 KKKPVIEYRHYSLPIDFPVLLLSGERWK--ISDIRSEHLHFHNHLEIGICYSDSGIMEIK 61 KK +E+R+Y++P +L L G+ W+ + HFHN+ E+G C+ G + I+ Sbjct: 2 KKHTALEFRYYNMPTGSYILPLYGDSWRREYGWDTGDTQHFHNYFELGFCHEGKGEVRIE 61 Query: 62 GEAVPFTAGDVTFIPRYLPHTTYSSPDTASLWSYLFFSPEDLFQHSFKSAYSSFEPNLWA 121 +P+ G T IP ++PHTT S+ W YLF + + A Sbjct: 62 DRVLPYGGGMYTMIPAHIPHTTKSASGNQCYWEYLFVDIDGFLGEKLQMDSRQKMEYTQA 121 Query: 122 VTGKNCILNKEQYPKVYTLATSVVEELKQQKPYYQENAYGXXXXXXXXXXRIHSTNEMLA 181 + + I + +P+ L +++E +Q+KPYY+E R+ + + Sbjct: 122 LNHRGTIRTMKNHPQAGRLVLKILDEFRQKKPYYEEAVNAAFYALIIEMLRLDIKSGGVG 181 Query: 182 EQEAEHSLKGDFVISPALEHITKNYMTPITIDSIAGLCHLSTTHFRRKFHEIMGVAPLDF 241 + ++ + + AL+++ +Y + I+ C LS +HFRR F E+MGV P+D+ Sbjct: 182 Q-----GIRMNSSVEMALQYMGSHYSQNLKAAQISRACGLSESHFRRTFEEVMGVPPMDY 236 Query: 242 LSRTRIEEACKQLKSTDHSILSISGQVGFHSISSFNRCFSRLMGESPKQWRKGAQAEAQS 301 L+ RI+ AC + + S+ I+G+VG+ + S+FNR F R+ G P +W++ E Sbjct: 237 LNLIRIQNACTLINEKNLSMEEIAGKVGYQTPSTFNRNFKRITGMQPLRWKQ----EISG 292 Query: 302 AKASILEFT-----GW 312 + I +F GW Sbjct: 293 HRGRIADFNVKVLKGW 308 >C4Z8R0.1 C4Z8R0_9FIRM L-rhamnose operon transcriptional activator Length = 312 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 96/316 (30%), Positives = 156/316 (49%), Gaps = 8/316 (2%) Query: 1 MPRKKKPVIEYRHYSLPIDFPVLLLSGERWKISDIRSE-HLHFHNHLEIGICYSDSGIME 59 M ++KK +E+R Y LP L+L GE WK E HLHFHN LEIGIC G M Sbjct: 1 MAKRKKDTMEFRFYELPQGESALVLCGESWKRVYGHDELHLHFHNLLEIGICREGDGNMY 60 Query: 60 IKGEAVPFTAGDVTFIPRYLPHTTYSSPDTASLWSYLFFSPEDLFQHSFKSAYSSFEPNL 119 + + + GD+TFIP PH T S + + W Y+F + + F + + + Sbjct: 61 LDEDIYQYHDGDITFIPENFPHVTVSYGEVVNFWEYIFIDLRSVIEEMFPNNAAFQNDAV 120 Query: 120 WAVTGKNCILNKEQYPKVYTLATSVVEELKQQKPYYQENAYGXXXXXXXXXXRIHSTNEM 179 ++ K + N Q P V S++ E + K Y Q R + Sbjct: 121 STISKKAFMTNVYQSPVVAGYINSIIRETNEHKEYSQRTIKLLVQGIVIELLRKYDE--- 177 Query: 180 LAEQEAEHSLKGDFV--ISPALEHITKNYMTPITIDSIAGLCHLSTTHFRRKFHEIMGVA 237 L E++ + +KG + I+ AL+++ K+Y I ++ LC++S THFRR F + + Sbjct: 178 LPEEDND-VVKGTNMSQIATALDYMNKHYSETIKAGELSSLCNMSETHFRRLFESYINMP 236 Query: 238 PLDFLSRTRIEEACKQLKSTDHSILSISGQVGFHSISSFNRCFSRLMGESPKQWRKGAQA 297 P+++L+ R+++AC+ +K T+ + I+ + GF + S+FNR F + + SP QW+ + Sbjct: 237 PMEYLNLIRVQKACELMKKTNEPMELIAQKCGFTTQSTFNRNFRKFLNTSPYQWKINPEN 296 Query: 298 -EAQSAKASILEFTGW 312 E + I GW Sbjct: 297 YEHKLLNFRISALKGW 312 >A6PRU5.1 A6PRU5_9BACT Transcriptional regulator, AraC family Length = 293 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 125/289 (43%), Gaps = 10/289 (3%) Query: 10 EYRHYSLPIDFPVLLLSGERWKI-SDIRSEHLHFHNHLEIGICYSDSGIMEIKGEAVPFT 68 +Y LP DFPV SG I +I H H+ E+G CYS G+ ++ + +PF Sbjct: 14 QYAPIRLPSDFPV---SGVDVNIRGEIPPIPPHIHDCFELGYCYSGEGLFLVEDKILPFR 70 Query: 69 AGDVTFIPRYLPHTTYSSPDTASLWSYLFFSPEDLFQHSFKSAYSSFEPNLWAVTGKNCI 128 AGD I H SSP + WS+L P L E + + Sbjct: 71 AGDAAIINHREVHVMVSSPGGKTNWSFLNLDPAALLAGYVTEREERLETASFCGNRFPNV 130 Query: 129 LNKEQYPKVYTLATSVVEELKQQKPYYQENAYGXXXXXXXXXXRIHSTNEMLAEQEAEHS 188 +++ +YP++ ++E ++ + R+H + Sbjct: 131 ISEAEYPELVQPVREIIETRVREPAGFSSE---IRSLVWLLLVRLHRAFHFETQSSPP-- 185 Query: 189 LKGDFVISPALEHITKNYMTPITIDSIAGLCHLSTTHFRRKFHEIMGVAPLDFLSRTRIE 248 G + PAL HI ++ P+ I +A LC S ++FR+ FH G AP +L R R++ Sbjct: 186 -PGVSRLMPALHHIARHIDRPVEIPRLAALCSTSESNFRKLFHRSFGCAPKVYLGRMRLK 244 Query: 249 EACKQLKSTDHSILSISGQVGFHSISSFNRCFSRLMGESPKQWRKGAQA 297 A L++ +L I+ + G+ S+S+FNR F G SP +R ++ Sbjct: 245 SAAVMLETGSLPVLEIALRCGYQSLSNFNRQFHACYGVSPSAFRAARKS 293 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,828,575,784 Number of extensions: 72652009 Number of successful extensions: 173572 Number of sequences better than 1.0e-05: 2809 Number of HSP's gapped: 174567 Number of HSP's successfully gapped: 2809 Length of query: 313 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 178 Effective length of database: 1,788,859,178 Effective search space: 318416933684 Effective search space used: 318416933684 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)