BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0017.p (519 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9M292.1 B9M292_GEOSF Putative uncharacterized protein 83 8e-14 A5URA0.1 A5URA0_ROSS1 Putative uncharacterized protein 70 6e-10 B8E4I4.1 B8E4I4_SHEB2 Putative uncharacterized protein 68 2e-09 A9B987.1 A9B987_HERA2 Putative uncharacterized protein 63 7e-08 Q82S63.1 Q82S63_NITEU ABC transporter 61 3e-07 >B9M292.1 B9M292_GEOSF Putative uncharacterized protein Length = 574 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 19/185 (10%) Query: 331 LLDHNSLSDGEFFWLSRMALIILSQQEYDENTLFLFDEPDVFLNENWTMQFISMLHDFAK 390 +L + LSDGE L RMAL L + D L L DEP+ N+ W + + ++ Sbjct: 407 VLRYEELSDGEQMVLGRMALFHLLDGQQD--ALLLLDEPETHFNDKWKREIVDII----- 459 Query: 391 MDLPGGESSEPRYNRQEYWIATHSTLILTDAFPDQTFKIESHSGVPGEFQAISLDIPTFG 450 D G ++ + I+THS ++LTD F ++ +E Q I+L PTFG Sbjct: 460 -DEAIGNTA------NDVLISTHSAIVLTDVFSEEIILLEKQDY---NVQRITLSSPTFG 509 Query: 451 ADRGEISALLFMDHERIGDFAKQVIDKALDEQKPYSNGRIQKMLDKVGPGYERFRLEEYL 510 AD GE+ +F + +G A++ +D E + ++ + KVGPG+ R L L Sbjct: 510 ADPGEVMMRIFDSPDSVGKRAQEWLDN--KEWAAMTTEELETFISKVGPGFYRTELRTLL 567 Query: 511 HARKQ 515 + RK+ Sbjct: 568 NERKR 572 >A5URA0.1 A5URA0_ROSS1 Putative uncharacterized protein Length = 509 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 21/205 (10%) Query: 310 AQRFGYLLNVNLFYKNEDSEH----LLDHNSLSDGEFFWLSRMALIILSQQEYDENTLFL 365 +Q L VNLF + +E L LSDGE +L RM L +L D +L L Sbjct: 310 SQESPLLTKVNLFLERAKTEKQASPLHTWEWLSDGERSFLGRMCLFMLFG---DVESLIL 366 Query: 366 FDEPDVFLNENWTMQFISMLHDFAKMDLPGGESSEPRYNRQEYWIATHSTLILTDAFPDQ 425 DEP+V N+ W + +H + + + +R IATHS++ L+D P + Sbjct: 367 LDEPEVHFNDYWKRHIVDTIHQIL--------AGKRKPHRSHLLIATHSSISLSDV-PKE 417 Query: 426 TFKIESHSGVPGEFQAISLDIPTFGADRGEISALLFMDHERIGDFAKQVIDKALDE--QK 483 + SG+ + ++ I TFGAD +I +F +G + I++ L E QK Sbjct: 418 DVVVLRRSGMLTDTMSMP-SIQTFGADPSDIMVHVFDAPHAMGQHSVNEIEQWLGEAYQK 476 Query: 484 PYSNGR--IQKMLDKVGPGYERFRL 506 P + R + + L +V PGY +R+ Sbjct: 477 PATERRKFLDEKLKQVSPGYWAYRI 501 >B8E4I4.1 B8E4I4_SHEB2 Putative uncharacterized protein Length = 571 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 98/195 (50%), Gaps = 22/195 (11%) Query: 325 NEDSEH---LLDHNSLSDGEFFWLSRMALIILSQQEYDENTLFLFDEPDVFLNENWTMQF 381 E +EH +L + LSDGE L RMAL L + + D L L DEP+ N+ W + Sbjct: 387 TEAAEHDIGILRYEELSDGEQMVLGRMALFHLLKGQQD--ALLLLDEPETHFNDKWKREI 444 Query: 382 ISMLHDFAKMDLPGGESSEPRYNRQEYWIATHSTLILTDAFPDQTFKIESHSGVPGEFQA 441 + ++ D G+++ + I++HS ++L+D F ++ +E +G + + Sbjct: 445 VDIIDDAI------GDTA------NDVLISSHSAIVLSDVFNNEIIMLEK-AGNGSDVR- 490 Query: 442 ISLDIPTFGADRGEISALLFMDHERIGDFAKQVIDKALDEQ--KPYSNGRIQKMLDKVGP 499 S+D PTF AD + +F + IG A++ I+ L++ P +++++ ++G Sbjct: 491 -SVDAPTFAADPSSLMMTIFDADDSIGKRAQEFIENKLEQATGTPDEIVDLERLIARMGS 549 Query: 500 GYERFRLEEYLHARK 514 G+ R L L++ + Sbjct: 550 GFYRSELRTLLNSWR 564 >A9B987.1 A9B987_HERA2 Putative uncharacterized protein Length = 519 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 21/179 (11%) Query: 337 LSDGEFFWLSRMALIILSQQEYDENTLFLFDEPDVFLNENWTMQFISMLHDFAKMDLPGG 396 LSDGE ++ RM+L + + D++ L L DEP+V N+ W Q + L L G Sbjct: 351 LSDGERSFIGRMSLFSMLR---DQDQLILLDEPEVHFNDYWKRQIVDRLATL----LEDG 403 Query: 397 ESSEPRYNRQEYWIATHSTLILTDAFPDQTFKIESHSGVPGEFQAISLDIPTFGADRGEI 456 + I +HS++ LTD P + I H G A S + T AD +I Sbjct: 404 KC--------HALITSHSSITLTDV-PREDI-IVLHRGEQYTQSAGSPTLKTLAADPSDI 453 Query: 457 SALLFMDHERIGDFAKQVIDKALDEQKPYSNGRIQK----MLDKVGPGYERFRLEEYLH 511 +F G +A + + LDE +N + Q+ +L++VGPGY +R+ L+ Sbjct: 454 IIHVFDSPYATGQYAVKKVKAILDEVGQRNNKQAQQKLKDLLNEVGPGYWSYRIRRVLY 512 >Q82S63.1 Q82S63_NITEU ABC transporter Length = 610 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 13/157 (8%) Query: 320 NLFYKNEDSEHLLDHNSLSDGEFFWLSRMALIILSQQEYDENTLFLFDEPDVFLNENWTM 379 N ++ + + + LSDGE+ L + L +L ++ N+LFL DEP+ N +W Sbjct: 417 NFYFTKQGVKKPMLLKDLSDGEYQMLHSLGLCLLFRKT---NSLFLLDEPETHFNPHWRA 473 Query: 380 QFISMLHDFAKMDLPGGESSEPRYNRQEYWIATHSTLILTDAFPDQTFKIESHSGVPGEF 439 FI+ L + LP E QE + TH+ +++D+ PD+ + + GE Sbjct: 474 SFITRL----RQCLPDVEGV-----GQEMLVTTHTPFLISDSKPDKVL-VFAKDKTSGEV 523 Query: 440 QAISLDIPTFGADRGEISALLFMDHERIGDFAKQVID 476 + T GA +I+ F E IG +A+ ++D Sbjct: 524 SISKPNYNTLGASINKITMNTFGKRETIGGYAQVLLD 560 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,990,684,948 Number of extensions: 122670975 Number of successful extensions: 395306 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 395331 Number of HSP's successfully gapped: 10 Length of query: 519 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 379 Effective length of database: 1,741,754,103 Effective search space: 660124805037 Effective search space used: 660124805037 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)