BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0012.p (375 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I4M8.1 B8I4M8_CLOCE ROK family protein 530 e-148 B2UXG9.1 B2UXG9_CLOBA ROK family protein 400 e-109 B1DIX4.1 B1DIX4_9BACL ROK family protein 372 e-101 B0NGA7.1 B0NGA7_EUBSP Putative uncharacterized protein 357 1e-96 A7VY95.1 A7VY95_9CLOT Putative uncharacterized protein 343 2e-92 >B8I4M8.1 B8I4M8_CLOCE ROK family protein Length = 374 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/375 (67%), Positives = 300/375 (80%), Gaps = 1/375 (0%) Query: 1 MATHRLNSMEVKKMNRNAIYRYLYHREATSIQEIAQALNLSLPTVTQNIKELQERELIVE 60 MAT ++NS+EVKK+NRNAIY +LY E SIQEIA LN+SLPTVTQNIKELQER L++E Sbjct: 1 MAT-KVNSIEVKKINRNAIYNFLYKHEPISIQEIAYTLNMSLPTVTQNIKELQERGLVIE 59 Query: 61 TGLFQSTGGRKAKSMACNSVAGYAIGLDVTRNHVGIVIIDLRGTIIKHVRNHFPFANTEV 120 TGLF+STGGRKAK+++ NS A Y++GLD+TRNHV IV+IDL G ++K++R +PF N + Sbjct: 60 TGLFESTGGRKAKAISYNSSAKYSVGLDITRNHVSIVVIDLSGKLLKNLRIQYPFNNHKE 119 Query: 121 YFKSVGKLVDDCVEESRIDSSKILGVGIALPAILSDDRQTVNYATVIDFKGGSIRRFAEF 180 YFK VG LV V E ID S +LGVGIALPAILSDDRQTV+YATVIDF+GGSI F EF Sbjct: 120 YFKGVGDLVTKLVSEVGIDESNMLGVGIALPAILSDDRQTVSYATVIDFRGGSINSFQEF 179 Query: 181 IRYPCILSNDANAAGFTELWGEKDIHNVVYLSLNNSVGGSIIVNNQIYTGQNHRGGEFGH 240 I Y ILSNDANA GF E+W E NV YLSLNNSVGGSII+ IY GQN R GEFGH Sbjct: 180 IPYDIILSNDANAGGFAEMWHEDANENVAYLSLNNSVGGSIIIAKNIYDGQNQRAGEFGH 239 Query: 241 MTIMPEGRTCYCGQKGCVDAYCSARILSDSTQGSISEFFRRLREGHEPQKAIWQEYIGYL 300 MTI+P G+ CYCGQKGCVDAYCSA+ILSDST G+I+EFFR L+ EPQ+++W EY +L Sbjct: 240 MTIVPNGKECYCGQKGCVDAYCSAKILSDSTNGNIAEFFRLLKTNKEPQRSLWNEYTSHL 299 Query: 301 VITVNNLRMLYDCDVILGGYAGAYMEEYIDTLQGLAAQKNTFERDGTYLRVCKYKLEATA 360 ++ +NNLRML+DC VILGGYAGAYM+EYID L+ A+ NTFE DG YL CKYKLEATA Sbjct: 300 IVAINNLRMLFDCKVILGGYAGAYMDEYIDELRQKVAKCNTFEVDGNYLHACKYKLEATA 359 Query: 361 VGAALELVTEFIDSI 375 VGAAL V +FI ++ Sbjct: 360 VGAALAHVDQFIKNV 374 >B2UXG9.1 B2UXG9_CLOBA ROK family protein Length = 375 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/375 (49%), Positives = 265/375 (70%) Query: 1 MATHRLNSMEVKKMNRNAIYRYLYHREATSIQEIAQALNLSLPTVTQNIKELQERELIVE 60 M + ++EVKK N+N IYR++Y+ E TS QEIA+ L +SLPT+TQ++K L E LI+E Sbjct: 1 MLYEKTTNIEVKKYNKNTIYRFIYNSEKTSKQEIAKNLEVSLPTITQHLKSLLEDGLIIE 60 Query: 61 TGLFQSTGGRKAKSMACNSVAGYAIGLDVTRNHVGIVIIDLRGTIIKHVRNHFPFANTEV 120 G F+STGGRKAK++ C + A+GLD+T+NH+ IV+IDL G I++++R F N Sbjct: 61 DGEFESTGGRKAKAIMCVKDSRLAVGLDITKNHISIVLIDLGGNILRNIRIEKRFENIAD 120 Query: 121 YFKSVGKLVDDCVEESRIDSSKILGVGIALPAILSDDRQTVNYATVIDFKGGSIRRFAEF 180 Y+K+VGK++ + +E S +SKILGVGI++P I+S D++ + + V+ K ++ Sbjct: 121 YYKNVGKVLCEFIENSTFKNSKILGVGISIPGIVSADQKEITNSHVLQIKNVQCEELKKY 180 Query: 181 IRYPCILSNDANAAGFTELWGEKDIHNVVYLSLNNSVGGSIIVNNQIYTGQNHRGGEFGH 240 I Y CI NDANAAG ELW + N++YLSL+NSVGG+I N ++Y G N R GEFGH Sbjct: 181 IPYDCIFCNDANAAGKAELWNDDSKKNIIYLSLSNSVGGAIFYNKKMYFGDNERSGEFGH 240 Query: 241 MTIMPEGRTCYCGQKGCVDAYCSARILSDSTQGSISEFFRRLREGHEPQKAIWQEYIGYL 300 M I+P+G+ CYCGQKGCVDAYCSA++L+DS GS+S FF L ++ Q IW+EYI L Sbjct: 241 MIIIPDGKQCYCGQKGCVDAYCSAKVLADSAGGSLSNFFTLLNNKNKEQVQIWKEYINNL 300 Query: 301 VITVNNLRMLYDCDVILGGYAGAYMEEYIDTLQGLAAQKNTFERDGTYLRVCKYKLEATA 360 I +NNLRM++DC +ILGGY GAY++E I ++ + ++ NTF + YLR C YKLE++A Sbjct: 301 SIVINNLRMVFDCTIILGGYVGAYLDENIKGIKEIVSKHNTFGIETKYLRSCHYKLESSA 360 Query: 361 VGAALELVTEFIDSI 375 VGAAL + +F++ I Sbjct: 361 VGAALLQIEKFMNQI 375 >B1DIX4.1 B1DIX4_9BACL ROK family protein Length = 372 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 169/368 (45%), Positives = 254/368 (69%) Query: 8 SMEVKKMNRNAIYRYLYHREATSIQEIAQALNLSLPTVTQNIKELQERELIVETGLFQST 67 S+ +K NRN IY+ L ++ S Q+I L LSLPTVTQN+ L E+ LI TG +T Sbjct: 5 SVNIKDFNRNRIYKLLREKQNLSKQDIVYQLQLSLPTVTQNLNFLLEQHLIENTGTIGNT 64 Query: 68 GGRKAKSMACNSVAGYAIGLDVTRNHVGIVIIDLRGTIIKHVRNHFPFANTEVYFKSVGK 127 GGR A++ + S A IGLDVT++HV V +DL G I++ +R+ F +E YF+ +G+ Sbjct: 65 GGRNAQAFSYISDAKAGIGLDVTKHHVTAVAVDLNGNILEMIRSKQTFERSERYFRFLGE 124 Query: 128 LVDDCVEESRIDSSKILGVGIALPAILSDDRQTVNYATVIDFKGGSIRRFAEFIRYPCIL 187 LV + + + +DSSK+LGVGI +P ++++D QTV Y ++DF G + + F ++I YP IL Sbjct: 125 LVQELIRTAHLDSSKVLGVGIGVPGLITEDHQTVFYGKILDFTGETAQNFGKYISYPAIL 184 Query: 188 SNDANAAGFTELWGEKDIHNVVYLSLNNSVGGSIIVNNQIYTGQNHRGGEFGHMTIMPEG 247 NDA+AAG +E+ DI++ Y+SL+N++GGS+ + NQ++ G N + E GH+T++P+G Sbjct: 185 INDADAAGLSEIRVTPDINHAFYISLSNNIGGSVYIGNQVFAGSNQKSAEIGHVTVVPDG 244 Query: 248 RTCYCGQKGCVDAYCSARILSDSTQGSISEFFRRLREGHEPQKAIWQEYIGYLVITVNNL 307 CYCGQKGC++AYCSA LS++ G +S+FF L+ G IW+ Y+ +L I +NN+ Sbjct: 245 LPCYCGQKGCLEAYCSADRLSEAAGGDLSQFFELLKAGKPEIVHIWKAYLNHLSIAINNI 304 Query: 308 RMLYDCDVILGGYAGAYMEEYIDTLQGLAAQKNTFERDGTYLRVCKYKLEATAVGAALEL 367 R+L+DCD+I+GGY GAYM++Y+D L+ L +N+FE + YLRVC+YK EA A GAAL Sbjct: 305 RLLFDCDIIIGGYVGAYMDDYMDDLKKLVISRNSFENEAEYLRVCRYKTEAIAAGAALPF 364 Query: 368 VTEFIDSI 375 + +F++ I Sbjct: 365 IDQFMNQI 372 >B0NGA7.1 B0NGA7_EUBSP Putative uncharacterized protein Length = 390 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 179/385 (46%), Positives = 244/385 (63%), Gaps = 16/385 (4%) Query: 7 NSMEVKKMNRNAIYRYLYHREATSIQEIAQALNLSLPTVTQNIKELQERELIVETGLFQS 66 ++ EVKK+NRN ++RY+ RE TS+ EI+ AL++S PTV + + EL+E +LI E G F+S Sbjct: 6 SNQEVKKLNRNRVFRYVNSREETSMPEISAALSISGPTVLKIVNELKEEKLIREVGEFES 65 Query: 67 TGGRKAKSMACNSVAGYAIGLDVTRNHVGIVIIDLRGTIIKHVRNHFPFANTEVYFKSVG 126 TGGRKAK++A YAIGLD+T+NHVGIV DL G +KH R PF T+ Y V Sbjct: 66 TGGRKAKAIAAVRDVKYAIGLDITKNHVGIVYTDLSGKALKHERVRKPFKYTQTYLHEVA 125 Query: 127 KLVDDCVEESRIDSSKILGVGIALPAILSDDRQTVNYATVIDFKGGSIRRFAEFIRYPCI 186 +V VEESRI +ILG+GI++PAI+ R + + + + YPC Sbjct: 126 AIVRRFVEESRIPKKRILGMGISVPAIIDVQRDYITNSHALGIYDVPCEELTACMPYPCE 185 Query: 187 LSNDANAAGFTELWGEKDIHNVVYLSLNNSVGGSIIVNNQ----------------IYTG 230 L NDANAA TE + N+VYL L+N+VGG+II N+ +Y G Sbjct: 186 LLNDANAAAITESNRSRTCSNLVYLFLSNTVGGAIIFGNETGIVRTAQEKDRGSVYMYKG 245 Query: 231 QNHRGGEFGHMTIMPEGRTCYCGQKGCVDAYCSARILSDSTQGSISEFFRRLREGHEPQK 290 N R GEFGHM I PEG+ CYCG+ GC+DAYCSA L+D T G + FFR + G++ K Sbjct: 246 NNWRSGEFGHMVIHPEGKRCYCGKIGCLDAYCSALRLADQTDGDLERFFREMEAGNQDLK 305 Query: 291 AIWQEYIGYLVITVNNLRMLYDCDVILGGYAGAYMEEYIDTLQGLAAQKNTFERDGTYLR 350 IW EY+ L I V+NLRM +DC+++LGGY G+ ME YI + L A+K+ FE G Y+ Sbjct: 306 KIWNEYLKDLAIAVDNLRMCFDCEIVLGGYVGSSMEPYIQEFRNLVAEKDIFENSGDYVY 365 Query: 351 VCKYKLEATAVGAALELVTEFIDSI 375 VC+Y+ EA+A+GAA+ + +FID+I Sbjct: 366 VCQYQQEASALGAAIFQIEKFIDTI 390 >A7VY95.1 A7VY95_9CLOT Putative uncharacterized protein Length = 392 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 164/369 (44%), Positives = 238/369 (64%) Query: 7 NSMEVKKMNRNAIYRYLYHREATSIQEIAQALNLSLPTVTQNIKELQERELIVETGLFQS 66 N+ K+ N+ ++R++ + TS EI L +SLPTV Q +KEL E LI E G F+S Sbjct: 24 NATGGKRKNKTRVFRFISQQGRTSKLEIVSRLGISLPTVLQTLKELTEDGLIWEMGEFES 83 Query: 67 TGGRKAKSMACNSVAGYAIGLDVTRNHVGIVIIDLRGTIIKHVRNHFPFANTEVYFKSVG 126 TGGRKAK++A + +A+GLD+TRNH+ +V DL G I +H+R FA + Y + + Sbjct: 84 TGGRKAKALAAVRGSRFAMGLDITRNHISLVAADLSGRIQRHIRIPKTFARSPAYGEFLA 143 Query: 127 KLVDDCVEESRIDSSKILGVGIALPAILSDDRQTVNYATVIDFKGGSIRRFAEFIRYPCI 186 L+ E RI + LGVGI++P I+ + + + + + ++ I YPC+ Sbjct: 144 GLISRYRTEWRIPVDRFLGVGISVPGIIDAQGRMIQDSHALGVRKMPCDELSKGIEYPCV 203 Query: 187 LSNDANAAGFTELWGEKDIHNVVYLSLNNSVGGSIIVNNQIYTGQNHRGGEFGHMTIMPE 246 NDANAAGF EL D+ N VYLSL+NSVGG+ + +++Y G++ R GEFGHMT+ P Sbjct: 204 FMNDANAAGFAELRESSDMENAVYLSLSNSVGGAFLQGSRLYLGEHQRSGEFGHMTLYPG 263 Query: 247 GRTCYCGQKGCVDAYCSARILSDSTQGSISEFFRRLREGHEPQKAIWQEYIGYLVITVNN 306 GR CYCG++GC+DAYCSA+ LS T+G + FF +LR+G + W Y LV N+ Sbjct: 264 GRECYCGKRGCLDAYCSAQRLSSLTEGKLDRFFEKLRQGDKECAQAWAGYQADLVTAANS 323 Query: 307 LRMLYDCDVILGGYAGAYMEEYIDTLQGLAAQKNTFERDGTYLRVCKYKLEATAVGAALE 366 L M +DCDVILGGY G Y+E++I L+ LA ++N F+ GTYL+VC+Y++EA+A+GAAL+ Sbjct: 324 LHMAFDCDVILGGYVGGYLEDWIGALRELAEERNPFDDGGTYLKVCRYRVEASALGAALQ 383 Query: 367 LVTEFIDSI 375 V FI+ + Sbjct: 384 HVERFIEGL 392 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,163,890,049 Number of extensions: 89428993 Number of successful extensions: 214355 Number of sequences better than 1.0e-05: 3193 Number of HSP's gapped: 211439 Number of HSP's successfully gapped: 3193 Length of query: 375 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 238 Effective length of database: 1,770,017,148 Effective search space: 421264081224 Effective search space used: 421264081224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)