BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0009.p (212 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3QRI7.1 A3QRI7_9BACL Endo-1,4-beta-xylanase EC=3.2.1.8 349 1e-94 B1DD60.1 B1DD60_9BACL Endo-1,4-beta-xylanase EC=3.2.1.8 344 4e-93 Q9F9B9.1 Q9F9B9_9BACL Endo-1,4-beta-xylanase EC=3.2.1.8 342 1e-92 Q1XGE6.1 Q1XGE6_9BACL Endo-1,4-beta-xylanase EC=3.2.1.8 342 1e-92 Q43993.1 Q43993_AERPU Endo-1,4-beta-xylanase EC=3.2.1.8 340 3e-92 >A3QRI7.1 A3QRI7_9BACL Endo-1,4-beta-xylanase EC=3.2.1.8 Length = 211 Score = 349 bits (895), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 173/212 (81%), Positives = 187/212 (88%), Gaps = 1/212 (0%) Query: 1 MFKFNKKIMTLVMAVSMSCXXXXXXXXXXXXDYWQNWTDGGGTVNAVNGSGGNYSVNWSN 60 MFKF+KK++T+++A SMS DYWQNWTDGGGTVNAVNGSGGNYSV W N Sbjct: 1 MFKFSKKMLTVILAASMSFGVFAATSSAAT-DYWQNWTDGGGTVNAVNGSGGNYSVTWQN 59 Query: 61 TGNFVVGKGWTVGSPDRTINYNAGVWAPSGNGYLTLYGWTRNSLIEYYVVDSWGTYRPTG 120 TGNFVVGKGW VGSP+RTINYNAGVW+PSGNGYLTLYGWTRN+LIEYYVVDSWGTYRPTG Sbjct: 60 TGNFVVGKGWNVGSPNRTINYNAGVWSPSGNGYLTLYGWTRNALIEYYVVDSWGTYRPTG 119 Query: 121 TYKGTVTSDGGTYDIYTTMRYNAPSIDGIQTFQQFWSVRQTKRPTGSNATITFANHVKAW 180 T+KGTV SDGGTYDIYTTMRYNAPSIDG QTF Q+WSVRQ+KR TG N+ I F+NHV AW Sbjct: 120 TFKGTVNSDGGTYDIYTTMRYNAPSIDGTQTFAQYWSVRQSKRATGVNSAIAFSNHVNAW 179 Query: 181 ASKGMNLGSSWSYQVLATEGYQSSGSSNVTVW 212 ASKGMNLGSSWSYQVLATEGYQSSGSSNVTVW Sbjct: 180 ASKGMNLGSSWSYQVLATEGYQSSGSSNVTVW 211 >B1DD60.1 B1DD60_9BACL Endo-1,4-beta-xylanase EC=3.2.1.8 Length = 211 Score = 344 bits (882), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 174/212 (82%), Positives = 179/212 (84%), Gaps = 1/212 (0%) Query: 1 MFKFNKKIMTLVMAVSMSCXXXXXXXXXXXXDYWQNWTDGGGTVNAVNGSGGNYSVNWSN 60 MFK KK+MT V+A SMS DYWQNWTDGGGTVNAVNGSGGNYSVNWSN Sbjct: 1 MFKLKKKVMTAVLAASMSIGLFAATANAAT-DYWQNWTDGGGTVNAVNGSGGNYSVNWSN 59 Query: 61 TGNFVVGKGWTVGSPDRTINYNAGVWAPSGNGYLTLYGWTRNSLIEYYVVDSWGTYRPTG 120 TGNFVVGKGW GS R INYNAGVWAPSGNGYLTLYGWTRNSLIEYYVVDSWGTYRPTG Sbjct: 60 TGNFVVGKGWNTGSASRVINYNAGVWAPSGNGYLTLYGWTRNSLIEYYVVDSWGTYRPTG 119 Query: 121 TYKGTVTSDGGTYDIYTTMRYNAPSIDGIQTFQQFWSVRQTKRPTGSNATITFANHVKAW 180 TYKGTV+SDGGTYDIYT R NAPSIDG TF Q+WSVRQ+KR TGSN ITFANHV AW Sbjct: 120 TYKGTVSSDGGTYDIYTAQRVNAPSIDGTATFTQYWSVRQSKRATGSNVAITFANHVNAW 179 Query: 181 ASKGMNLGSSWSYQVLATEGYQSSGSSNVTVW 212 SKGMNLGSSWSYQVLATEGYQSSGSSNVTVW Sbjct: 180 KSKGMNLGSSWSYQVLATEGYQSSGSSNVTVW 211 >Q9F9B9.1 Q9F9B9_9BACL Endo-1,4-beta-xylanase EC=3.2.1.8 Length = 212 Score = 342 bits (878), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 173/213 (81%), Positives = 189/213 (88%), Gaps = 2/213 (0%) Query: 1 MFKFNKKIMTLVMAVSMSCXXXXXXXXXXXXDYWQNWTDGGGTVNAVNGSGGNYSVNWSN 60 MFK +KK++T+V+A SMS DYWQNWTDGGGTVNAVNGSGGNYSV W N Sbjct: 1 MFKSSKKLLTVVLAASMSFGFFASTSNAAT-DYWQNWTDGGGTVNAVNGSGGNYSVTWKN 59 Query: 61 TGNFVVGKGWTVGSPDRTINYNAGVWAPSGNGYLTLYGWTRNSLIEYYVVDSWGTYRPTG 120 +GNFVVGKGWT GSPDRTINYNAGVWAPSGNGYL LYGWTRNSLIEYYVVDSWGTYRPTG Sbjct: 60 SGNFVVGKGWTTGSPDRTINYNAGVWAPSGNGYLALYGWTRNSLIEYYVVDSWGTYRPTG 119 Query: 121 TYKGTVTSDGGTYDIYTTMRYNAPSIDGIQ-TFQQFWSVRQTKRPTGSNATITFANHVKA 179 TYKGTVTSDGGTYDIYTTMRY+APSI+G + TF Q+WSVRQTKRPTG N+TITF+NHVKA Sbjct: 120 TYKGTVTSDGGTYDIYTTMRYDAPSIEGQKTTFIQYWSVRQTKRPTGGNSTITFSNHVKA 179 Query: 180 WASKGMNLGSSWSYQVLATEGYQSSGSSNVTVW 212 WA +GM+LG++WSYQVLATEGYQSSGSSNVTVW Sbjct: 180 WARQGMHLGNNWSYQVLATEGYQSSGSSNVTVW 212 >Q1XGE6.1 Q1XGE6_9BACL Endo-1,4-beta-xylanase EC=3.2.1.8 Length = 211 Score = 342 bits (877), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 170/212 (80%), Positives = 186/212 (87%), Gaps = 1/212 (0%) Query: 1 MFKFNKKIMTLVMAVSMSCXXXXXXXXXXXXDYWQNWTDGGGTVNAVNGSGGNYSVNWSN 60 MFKF KK++T+V+A SMS DYWQNWTDGGGTVNAVNGSGGNYSVNW N Sbjct: 1 MFKFGKKLLTVVLAASMSFGVFAATSSAAT-DYWQNWTDGGGTVNAVNGSGGNYSVNWQN 59 Query: 61 TGNFVVGKGWTVGSPDRTINYNAGVWAPSGNGYLTLYGWTRNSLIEYYVVDSWGTYRPTG 120 TGNFVVGKGWT G+P+R +NYNAGV++PSGNGYLT YGWTRN+LIEYYVVD+WGTYRPTG Sbjct: 60 TGNFVVGKGWTYGTPNRVVNYNAGVFSPSGNGYLTFYGWTRNALIEYYVVDNWGTYRPTG 119 Query: 121 TYKGTVTSDGGTYDIYTTMRYNAPSIDGIQTFQQFWSVRQTKRPTGSNATITFANHVKAW 180 TYKGTV SDGGTYDIYTTMRYNAPSIDG QTF Q+WSVRQTKRP G N+TITF+NHV AW Sbjct: 120 TYKGTVNSDGGTYDIYTTMRYNAPSIDGTQTFPQYWSVRQTKRPIGVNSTITFSNHVNAW 179 Query: 181 ASKGMNLGSSWSYQVLATEGYQSSGSSNVTVW 212 ASKGM LG+SWSYQV+ATEGYQSSGSSNVTVW Sbjct: 180 ASKGMYLGNSWSYQVMATEGYQSSGSSNVTVW 211 >Q43993.1 Q43993_AERPU Endo-1,4-beta-xylanase EC=3.2.1.8 Length = 211 Score = 340 bits (873), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 169/212 (79%), Positives = 186/212 (87%), Gaps = 1/212 (0%) Query: 1 MFKFNKKIMTLVMAVSMSCXXXXXXXXXXXXDYWQNWTDGGGTVNAVNGSGGNYSVNWSN 60 MFKF KK+MT+V+A SMS DYWQNWTDGGGTVNAVNGSGGNYSV+W N Sbjct: 1 MFKFGKKLMTVVLAASMSFGVFAATSSAAT-DYWQNWTDGGGTVNAVNGSGGNYSVSWQN 59 Query: 61 TGNFVVGKGWTVGSPDRTINYNAGVWAPSGNGYLTLYGWTRNSLIEYYVVDSWGTYRPTG 120 TGNFVVGKGWT G+P+R +NYNAGV+APSGNGYLT YGWTRN+LIEYYVVDSWGTYRPTG Sbjct: 60 TGNFVVGKGWTYGTPNRVVNYNAGVFAPSGNGYLTFYGWTRNALIEYYVVDSWGTYRPTG 119 Query: 121 TYKGTVTSDGGTYDIYTTMRYNAPSIDGIQTFQQFWSVRQTKRPTGSNATITFANHVKAW 180 TYKGTV SDGGTYDIYTTMRYNAPSIDG QTF Q+WSVRQ+KRPTG N+TITF+NHV AW Sbjct: 120 TYKGTVNSDGGTYDIYTTMRYNAPSIDGTQTFPQYWSVRQSKRPTGVNSTITFSNHVNAW 179 Query: 181 ASKGMNLGSSWSYQVLATEGYQSSGSSNVTVW 212 SKGM LG+SWSYQV+ATEGYQSSG++NVTVW Sbjct: 180 PSKGMYLGNSWSYQVMATEGYQSSGNANVTVW 211 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.130 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,425,142,351 Number of extensions: 67622969 Number of successful extensions: 121690 Number of sequences better than 1.0e-05: 463 Number of HSP's gapped: 120298 Number of HSP's successfully gapped: 469 Length of query: 212 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 82 Effective length of database: 1,835,964,253 Effective search space: 150549068746 Effective search space used: 150549068746 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 128 (53.9 bits)