BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0437.0007.p
         (138 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9Y9U8.1 B9Y9U8_9FIRM Putative uncharacterized protein                116   7e-25

>B9Y9U8.1 B9Y9U8_9FIRM Putative uncharacterized protein
          Length = 217

 Score =  116 bits (290), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 72/103 (69%)

Query: 4   RKLNKKYYFSVEGETEKWYLDWIKHLINSDPAAIYTVSIDSKKEKDPVKRAKSLTVLSET 63
           RK N+ YYFSVEG+TE WYL+W++  IN++  A  TV +D K +K+P  R K LT++S+T
Sbjct: 2   RKENRTYYFSVEGKTELWYLEWLQQRINAEENAKMTVKLDVKVQKNPFDRVKRLTMISKT 61

Query: 64  VITHWFDYESSEAVHTKQFKETLDALKKTSTFKKQIKYKLGYS 106
            ITH FDYES+E  H KQFK  +D +KK     K +KY LGYS
Sbjct: 62  EITHIFDYESNEEQHVKQFKSVIDNMKKAQNSGKNVKYNLGYS 104


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.129    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 676,811,983
Number of extensions: 24652457
Number of successful extensions: 46689
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 46689
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 3,060,696,203
Length adjustment: 102
Effective length of query: 36
Effective length of database: 2,099,752,673
Effective search space: 75591096228
Effective search space used: 75591096228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)