BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0006.p (236 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9Y9U9.1 B9Y9U9_9FIRM Putative uncharacterized protein (Fragment) 253 1e-65 A3DHA8.1 A3DHA8_CLOTH Abortive infection protein, putative 130 1e-28 B4BCV5.1 B4BCV5_CLOTM Putative uncharacterized protein 130 1e-28 A6TJV2.1 A6TJV2_ALKMQ Abortive infection protein, putative 126 1e-27 A3UA50.1 A3UA50_9FLAO Abortive infection protein, putative 108 4e-22 >B9Y9U9.1 B9Y9U9_9FIRM Putative uncharacterized protein (Fragment) Length = 402 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 121/203 (59%), Positives = 158/203 (77%), Gaps = 4/203 (1%) Query: 1 MNGFKAMFSLKLVNIITNWLEDKFMVFCRADALQA--RPSTSKKDTIYINTTINDAARIF 58 MNGF+ MFS KL +I+ WL+ K MV ADA++ + + KK +IY+ T+N+AA F Sbjct: 200 MNGFRTMFSAKLTALISEWLKQKLMVLVHADAIELVRKFTDPKKKSIYVEKTLNEAAINF 259 Query: 59 GINSNALGYHSSDEDSEPKLYSILD--NKGIVQADSFESFGTIRFVNMFPIVIDALLSGG 116 GINSNALGY DE + KL+SI D K + A+ FES+GT+RF+NMFP+V++ALL+GG Sbjct: 260 GINSNALGYVIMDESHDAKLFSIFDGEKKTGIPAELFESYGTLRFINMFPLVVNALLNGG 319 Query: 117 TLVIDEFDASLHPMALMSIVNIFHNDDLNTQNAQLIFNTHNPIFLNSNLFRRDEIKFVER 176 L++DEFDAS+HPMALM+I+N+FHNDD+N +AQL+FNTHNPIFLNSNL+RRDEIKFVER Sbjct: 320 VLIVDEFDASIHPMALMNIINLFHNDDINIHHAQLVFNTHNPIFLNSNLYRRDEIKFVER 379 Query: 177 DEETFSSIHYSLSDFGTSGEKAV 199 +EET S Y+LSDF T+G+ V Sbjct: 380 NEETHFSTLYALSDFKTAGKSGV 402 >A3DHA8.1 A3DHA8_CLOTH Abortive infection protein, putative Length = 432 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 134/239 (56%), Gaps = 16/239 (6%) Query: 2 NGFKAMFSLKLVNIITNWLEDKFMVF----CRADALQARPSTSKKDTIYINTTINDAARI 57 + FK + S ++ + I ++ ++K +V + + KD + N TI+ + Sbjct: 192 HAFKTIVSNEIADKIIDFFKNKLLVISDFSLKKMSFTYTEEIPDKDFLAWNETIDVFVKS 251 Query: 58 FGINSNALGYHSSDEDSEPK-------LYSILDNKGIVQADSFESFGTIRFVNMFPIVID 110 + + S D + +Y + + I+ A+ ES GT++ ++ F I + Sbjct: 252 ADFGPQRILFKSQKSDDQHSGDIQLVSIYKVGKHNVIIPAELMESRGTLKLLD-FAIPFE 310 Query: 111 AL-LSGGTLVIDEFDASLHPMALMSIVNIFHNDDLNTQNAQLIFNTHNPIFLNSNLFRRD 169 L + GG V+DEFDA++HP + I+ +F++ +N + AQLIF THNPI+L++ +FRRD Sbjct: 311 GLFMEGGVFVLDEFDAAIHPELVKGIIALFNDQSINKKGAQLIFTTHNPIYLSNKIFRRD 370 Query: 170 EIKFVERDEETFSSIHYSLSDFGTSGEKAVRQGGDYMKNYFTSQYGAIKDVDFTSVFEK 228 +I FVE+D++TF S YSL+DFG++ VR +Y+ NYF +Y ++ +DF+ +F K Sbjct: 371 QIIFVEKDKDTFESTIYSLADFGSAD---VRNDQNYLINYFKGKYSSLPYIDFSKLFTK 426 >B4BCV5.1 B4BCV5_CLOTM Putative uncharacterized protein Length = 432 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 134/239 (56%), Gaps = 16/239 (6%) Query: 2 NGFKAMFSLKLVNIITNWLEDKFMVF----CRADALQARPSTSKKDTIYINTTINDAARI 57 + FK + S ++ + I ++ ++K +V + + KD + N TI+ + Sbjct: 192 HAFKTIVSNEIADKIIDFFKNKLLVISDFSLKKMSFTYTEEIPDKDFLAWNETIDVFVKS 251 Query: 58 FGINSNALGYHSSDEDSEPK-------LYSILDNKGIVQADSFESFGTIRFVNMFPIVID 110 + + S D + +Y + + I+ A+ ES GT++ ++ F I + Sbjct: 252 ADFGPQRILFKSQKSDDQHSGDIQLVSIYKVGKHNVIIPAELMESRGTLKLLD-FAIPFE 310 Query: 111 AL-LSGGTLVIDEFDASLHPMALMSIVNIFHNDDLNTQNAQLIFNTHNPIFLNSNLFRRD 169 L + GG V+DEFDA++HP + I+ +F++ +N + AQLIF THNPI+L++ +FRRD Sbjct: 311 GLFMEGGVFVLDEFDAAIHPELVKGIIALFNDQSINKKGAQLIFTTHNPIYLSNKIFRRD 370 Query: 170 EIKFVERDEETFSSIHYSLSDFGTSGEKAVRQGGDYMKNYFTSQYGAIKDVDFTSVFEK 228 +I FVE+D++TF S YSL+DFG++ VR +Y+ NYF +Y ++ +DF+ +F K Sbjct: 371 QIIFVEKDKDTFESTIYSLADFGSAD---VRNDQNYLINYFKGKYSSLPYIDFSKLFTK 426 >A6TJV2.1 A6TJV2_ALKMQ Abortive infection protein, putative Length = 234 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 116/196 (59%), Gaps = 12/196 (6%) Query: 39 TSKKDTIYINTTINDAARIFGINSNALGYHSSD----EDSEPKLYSIL---DNKGIVQAD 91 + KKD + N ++ + + + + S+ E S +L SI D ++ A+ Sbjct: 30 SPKKDFLAWNKILDGFVKNADLGPQGIAFKSNKSENKESSNMELVSIYKYNDENIVIPAE 89 Query: 92 SFESFGTIRFVNMFPIVIDALLS-GGTLVIDEFDASLHPMALMSIVNIFHNDDLNTQNAQ 150 ES GT++ V+ F I + L GG V+DEFDA++HP + I+ +F++ D N AQ Sbjct: 90 LMESRGTLKLVD-FAIPFEKLFKLGGVFVLDEFDAAIHPELIKGILALFNDSDRNKAGAQ 148 Query: 151 LIFNTHNPIFLNSNLFRRDEIKFVERDEETFSSIHYSLSDFGTSGEKAVRQGGDYMKNYF 210 LIF THNPI+LN+ +FRRD+I+FVE+D + + S+ YSL+DFG+ + VR +++ NYF Sbjct: 149 LIFTTHNPIYLNNKIFRRDQIRFVEKDTDLYESVIYSLADFGS---EEVRNDHNFLINYF 205 Query: 211 TSQYGAIKDVDFTSVF 226 YGA+ +DF+ + Sbjct: 206 KGNYGALPFIDFSKLL 221 >A3UA50.1 A3UA50_9FLAO Abortive infection protein, putative Length = 438 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 65/146 (44%), Positives = 86/146 (58%), Gaps = 7/146 (4%) Query: 91 DSFESFGTIRFVNMFPIVIDALLSGGTLVIDEFDASLHPMALMSIVNIFHNDDLNTQNAQ 150 D ES GT +F + +ID L +G TL +DE D+ LHP + IV++F++ LN NAQ Sbjct: 298 DDMESSGTKKFFALTGPIIDTLENGNTLFVDELDSKLHPNLVEKIVSLFNSKSLNPHNAQ 357 Query: 151 LIFNTHNPIFLNSNLFRRDEIKFVERDEETFSSIHYSLSDFGTSGEKAVRQGGDYMKNYF 210 LIFNTHN L+S L RRD+I FVE+D S +H SLSDF K +R+ NY Sbjct: 358 LIFNTHNTNLLDSGLLRRDQIWFVEKDSCGSSELH-SLSDF-----KKIRKNEALESNYL 411 Query: 211 TSQYGAIKDVDFTSVF-EKLLETRRE 235 +YGAI ++F + F K LE E Sbjct: 412 RGKYGAIPYLEFFNSFTSKFLEYENE 437 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,339,743,832 Number of extensions: 53234441 Number of successful extensions: 124439 Number of sequences better than 1.0e-05: 144 Number of HSP's gapped: 124404 Number of HSP's successfully gapped: 144 Length of query: 236 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 104 Effective length of database: 1,817,122,223 Effective search space: 188980711192 Effective search space used: 188980711192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)