BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0005.p (203 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9Y9U9.1 B9Y9U9_9FIRM Putative uncharacterized protein (Fragment) 204 3e-51 A3DHA8.1 A3DHA8_CLOTH Abortive infection protein, putative 69 2e-10 B4BCV5.1 B4BCV5_CLOTM Putative uncharacterized protein 69 2e-10 Q8G8E7.1 Q8G8E7_CAMJE RloA 65 3e-09 A8FNL0.1 A8FNL0_CAMJ8 Putative uncharacterized protein 63 1e-08 >B9Y9U9.1 B9Y9U9_9FIRM Putative uncharacterized protein (Fragment) Length = 402 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 103/194 (53%), Positives = 130/194 (67%), Gaps = 2/194 (1%) Query: 1 MLLEFRTKNFKSFQDELIFSLTPAPKQKGLXXXXXXXXXKIGSKEYKGLSSAVIYGPNAS 60 MLL+F N+KSF+DE +FSL PAPKQKGL IG Y+GL SAVIYGPNAS Sbjct: 1 MLLKFTASNYKSFKDEFVFSLIPAPKQKGLDYSVMEEV--IGKTSYRGLCSAVIYGPNAS 58 Query: 61 GKTNIIGAMDVLKSIILRGHIRNEDKKSKSNAAASTLELIPNSADKSKTPVDFSIRFTDS 120 GKTNII AMD K+I+LRGH+RN + + NAA+ LELIPN+A K+ PV FSI+F Sbjct: 59 GKTNIIEAMDTFKTIVLRGHLRNAENHHRYNAASEMLELIPNNALKTPEPVHFSIQFLTQ 118 Query: 121 GLMFEYKLSLDLGSFLEEGYNRKVLSEVLRVNEKLIFSRNPSLDLGDTNLIRKYAINGFE 180 G++ +Y S DLG FLE Y RK+LSE L +N++LIFSRN L G+ I+ ++ FE Sbjct: 119 GMLVDYSFSADLGMFLEAEYARKILSETLLINKELIFSRNTDLVFGNLERIQDLLVDAFE 178 Query: 181 ENENSVRNLAKKNL 194 +N+ LAK L Sbjct: 179 DNKTGAFALAKSGL 192 >A3DHA8.1 A3DHA8_CLOTH Abortive infection protein, putative Length = 432 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 15/153 (9%) Query: 1 MLLEFRTKNFKSFQDELIFSLTPAPKQKGLXXXXXXXXXKIGSKEYKGLSSAVIYGPNAS 60 ML+++ +NF+SF+ + S+ A +Q+ L I + L SAVIYG NAS Sbjct: 1 MLIKYVFQNFRSFKGKSELSMK-AGRQRTLDENL------IRENGLRILPSAVIYGANAS 53 Query: 61 GKTNIIGAMDVLKSIILRGHIRNEDKKSKSNAAASTLELIPNSADKSKTPVDFSIRFTDS 120 GK+NII ++ +++ I+L G + S+ + EL P ++P+ F I F + Sbjct: 54 GKSNIIMSLALMREIVLLGSV------GTSHPYLNNFELYPFVHSIEQSPMLFEIEFINQ 107 Query: 121 GLMFEYKLSLDLGSFLEEGYNRKVLSEVLRVNE 153 G+ F Y + SF E+G NR+++SE+L +N Sbjct: 108 GVHFLYSFEVMTKSF-EKG-NRRIVSEMLWINH 138 >B4BCV5.1 B4BCV5_CLOTM Putative uncharacterized protein Length = 432 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 15/153 (9%) Query: 1 MLLEFRTKNFKSFQDELIFSLTPAPKQKGLXXXXXXXXXKIGSKEYKGLSSAVIYGPNAS 60 ML+++ +NF+SF+ + S+ A +Q+ L I + L SAVIYG NAS Sbjct: 1 MLIKYVFQNFRSFKGKSELSMK-AGRQRTLDENL------IRENGLRILPSAVIYGANAS 53 Query: 61 GKTNIIGAMDVLKSIILRGHIRNEDKKSKSNAAASTLELIPNSADKSKTPVDFSIRFTDS 120 GK+NII ++ +++ I+L G + S+ + EL P ++P+ F I F + Sbjct: 54 GKSNIIMSLALMREIVLLGSV------GTSHPYLNNFELYPFVHSIEQSPMLFEIEFINQ 107 Query: 121 GLMFEYKLSLDLGSFLEEGYNRKVLSEVLRVNE 153 G+ F Y + SF E+G NR+++SE+L +N Sbjct: 108 GVHFLYSFEVMTKSF-EKG-NRRIVSEMLWINH 138 >Q8G8E7.1 Q8G8E7_CAMJE RloA Length = 429 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 14/139 (10%) Query: 1 MLLEFRTKNFKSFQDELIFSLTPAPKQKGLXXXXXXXXXKIGSKEYKGLSSAVIYGPNAS 60 ML+EFR +NF S QDE I S+ + G K+ L S+VIYG NAS Sbjct: 1 MLIEFRVENFLSIQDEQILSMMASKDNTFFDSHTN------GDKKLALLKSSVIYGANAS 54 Query: 61 GKTNIIGAMDVLKSIILRGHIRNEDKKSKSNAAASTLELIPNSADKSKTPVDFSIRFTDS 120 GK+NI+ A+ +K+I++ KK + + T L+ N +K P F I F + Sbjct: 55 GKSNIVKALQTMKTIVISSA-----KKQRGDKLPITPFLLGNEDNK---PTKFEIIFIQN 106 Query: 121 GLMFEYKLSLDLGSFLEEG 139 ++Y L+ LEE Sbjct: 107 DTKYQYGFILNSEKILEEW 125 >A8FNL0.1 A8FNL0_CAMJ8 Putative uncharacterized protein Length = 440 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 16/140 (11%) Query: 1 MLLEFRTKNFKSFQDELIFSLTPAPKQKGLXXXXXXXXXKIGSKEYKGLSSAVIYGPNAS 60 ML+EFR +NF S QDE I S+ + G K+ L S+VIYG NAS Sbjct: 1 MLIEFRVENFLSIQDEQILSMMASKDNTFFDSHTN------GDKKLALLKSSVIYGANAS 54 Query: 61 GKTNIIGAMDVLKSIILRGHIRNEDKKSKSNAAASTLELIPN-SADKSKTPVDFSIRFTD 119 GK+NI+ A+ +K+I++ S + L + P D+ P F I F Sbjct: 55 GKSNIVKALQTMKTIVI---------SSANTQRGDKLPITPFLLGDEDDKPTKFEIIFIQ 105 Query: 120 SGLMFEYKLSLDLGSFLEEG 139 + ++Y L+ LEE Sbjct: 106 NDTKYQYGFILNSEKILEEW 125 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,036,535,270 Number of extensions: 39263007 Number of successful extensions: 130251 Number of sequences better than 1.0e-05: 25 Number of HSP's gapped: 130316 Number of HSP's successfully gapped: 25 Length of query: 203 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 74 Effective length of database: 1,845,385,268 Effective search space: 136558509832 Effective search space used: 136558509832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)