BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0001.p (375 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2ZKH0.1 C2ZKH0_BACCE Type III restriction protein res subunit 481 e-134 C2Z3Z9.1 C2Z3Z9_BACCE Type III restriction protein res subunit 481 e-134 C2MX00.1 C2MX00_BACCE Type III restriction protein res subunit 481 e-134 C2QP44.1 C2QP44_BACCE Type III restriction protein res subunit 478 e-133 C2X7Y5.1 C2X7Y5_BACCE Type III restriction protein res subunit 478 e-133 >C2ZKH0.1 C2ZKH0_BACCE Type III restriction protein res subunit Length = 966 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 228/350 (65%), Positives = 291/350 (83%), Gaps = 4/350 (1%) Query: 1 LLKITNVEVRLTDLSGFHAKGYVFQHEDHSTIIMGSSNLTAAALKVNYEWNVKLTSFKHG 60 L+K+ NVEVRLT+LSGFH+KGY+F ++ H ++I+GSSNLTA ALKVNYEWNVKLTS + G Sbjct: 104 LMKLENVEVRLTNLSGFHSKGYIFDNKTHCSLIVGSSNLTAHALKVNYEWNVKLTSHEDG 163 Query: 61 GLLGQFHSEFEKVWLNAVPLTNKWIELYQILYEEVQKVTRNDRLAMPFTPEKFPQTVSGL 120 ++ F ++FE+VW ++ LT + I Y+ +YE+V + DR+ P ++ ++ Sbjct: 164 EIVQHFKNQFEEVWEHSQVLTEELIGNYETIYEQVAENKLLDRVIE--LPGQYHNSIEEA 221 Query: 121 --VSPNKMQERALQNLKELRTTGAVKGLVISATGTGKTYLSAFDVKSFAPSRMLFVVHRE 178 ++PNKMQ+ AL+ ++ +R G KGLVISATGTGKTYLSAFDV++FAP RMLF+VHRE Sbjct: 222 LKITPNKMQQAALKEIQAIRDAGKEKGLVISATGTGKTYLSAFDVRNFAPKRMLFIVHRE 281 Query: 179 QILQKALADYQRILGGADSDFGILSGNSKETDAKYLFATIQTISQDSSLSNYNPEAFDYI 238 QIL KA +D+QRILGG D DFGILSG++K+ DAKYLFATIQTIS++ +L ++PE FDYI Sbjct: 282 QILNKAKSDFQRILGGIDEDFGILSGSNKQIDAKYLFATIQTISKEENLHQFDPELFDYI 341 Query: 239 LIDEVHKAGARSYLKVIEHFKPKFLLGMTATPERTDDFNIYELFDYNIAYEIRLQEALEE 298 LIDEVHKAGA SY +VI++FKPKFL+GMTATPERTD+FNIYELFDYNIAYEIRLQEALEE Sbjct: 342 LIDEVHKAGASSYHRVIDYFKPKFLMGMTATPERTDNFNIYELFDYNIAYEIRLQEALEE 401 Query: 299 DMLCPFHYFGVTDFEYNGQIIDDTTLLSQLVTDERVSYLIEKIEYYGYSG 348 DMLCPFHYFGVTDFEYNG+ IDDTT+LS+LVT+ERV +++ K++YYG+SG Sbjct: 402 DMLCPFHYFGVTDFEYNGEKIDDTTVLSKLVTEERVDHIVGKVKYYGFSG 451 >C2Z3Z9.1 C2Z3Z9_BACCE Type III restriction protein res subunit Length = 966 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 228/350 (65%), Positives = 291/350 (83%), Gaps = 4/350 (1%) Query: 1 LLKITNVEVRLTDLSGFHAKGYVFQHEDHSTIIMGSSNLTAAALKVNYEWNVKLTSFKHG 60 L+K+ NVEVRLT+LSGFH+KGY+F ++ H ++I+GSSNLTA ALKVNYEWNVKLTS + G Sbjct: 104 LMKLENVEVRLTNLSGFHSKGYIFDNKTHCSLIVGSSNLTAHALKVNYEWNVKLTSHEDG 163 Query: 61 GLLGQFHSEFEKVWLNAVPLTNKWIELYQILYEEVQKVTRNDRLAMPFTPEKFPQTVSGL 120 ++ F ++FE+VW ++ LT + I Y+ +YE+V + DR+ P ++ ++ Sbjct: 164 EIVQHFKNQFEEVWEHSQVLTEELIGNYETIYEQVAENKLLDRVIE--LPGQYHNSIEEA 221 Query: 121 --VSPNKMQERALQNLKELRTTGAVKGLVISATGTGKTYLSAFDVKSFAPSRMLFVVHRE 178 ++PNKMQ+ AL+ ++ +R G KGLVISATGTGKTYLSAFDV++FAP RMLF+VHRE Sbjct: 222 LKITPNKMQQAALKEIQAIRDAGKEKGLVISATGTGKTYLSAFDVRNFAPKRMLFIVHRE 281 Query: 179 QILQKALADYQRILGGADSDFGILSGNSKETDAKYLFATIQTISQDSSLSNYNPEAFDYI 238 QIL KA +D+QRILGG D DFGILSG++K+ DAKYLFATIQTIS++ +L ++PE FDYI Sbjct: 282 QILNKAKSDFQRILGGIDEDFGILSGSNKQIDAKYLFATIQTISKEENLHQFDPELFDYI 341 Query: 239 LIDEVHKAGARSYLKVIEHFKPKFLLGMTATPERTDDFNIYELFDYNIAYEIRLQEALEE 298 LIDEVHKAGA SY +VI++FKPKFL+GMTATPERTD+FNIYELFDYNIAYEIRLQEALEE Sbjct: 342 LIDEVHKAGASSYHRVIDYFKPKFLMGMTATPERTDNFNIYELFDYNIAYEIRLQEALEE 401 Query: 299 DMLCPFHYFGVTDFEYNGQIIDDTTLLSQLVTDERVSYLIEKIEYYGYSG 348 DMLCPFHYFGVTDFEYNG+ IDDTT+LS+LVT+ERV +++ K++YYG+SG Sbjct: 402 DMLCPFHYFGVTDFEYNGEKIDDTTVLSKLVTEERVDHIVGKVKYYGFSG 451 >C2MX00.1 C2MX00_BACCE Type III restriction protein res subunit Length = 966 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 227/350 (64%), Positives = 288/350 (82%), Gaps = 4/350 (1%) Query: 1 LLKITNVEVRLTDLSGFHAKGYVFQHEDHSTIIMGSSNLTAAALKVNYEWNVKLTSFKHG 60 L+K+ NVEVRLT+LSGFH+KGY+F ++ H ++I+GSSNLTA ALKVNYEWNVKLTS + G Sbjct: 104 LMKLENVEVRLTNLSGFHSKGYIFDNQTHCSLIVGSSNLTAHALKVNYEWNVKLTSHEDG 163 Query: 61 GLLGQFHSEFEKVWLNAVPLTNKWIELYQILYEEVQKVTRNDRLAMPFTPEKFPQTVSGL 120 ++ F ++FE+VW ++ LT + I Y+ +YE+V + DR+ P ++ + Sbjct: 164 EIVQHFKNQFEEVWEHSQVLTEELIANYETIYEQVAETKLLDRVIE--LPGQYHNAIEEA 221 Query: 121 --VSPNKMQERALQNLKELRTTGAVKGLVISATGTGKTYLSAFDVKSFAPSRMLFVVHRE 178 ++PNKMQ+ AL+ ++ +R G KGLVIS TGTGKTYLSAFDV++FAP RMLF+VHRE Sbjct: 222 LKITPNKMQQAALKEIQAIREAGEEKGLVISTTGTGKTYLSAFDVRNFAPKRMLFIVHRE 281 Query: 179 QILQKALADYQRILGGADSDFGILSGNSKETDAKYLFATIQTISQDSSLSNYNPEAFDYI 238 QIL KA +D+Q++LGGAD DFGILSG++K+ AKYLFATIQTIS++ +L + PE FDYI Sbjct: 282 QILNKAKSDFQKVLGGADEDFGILSGSNKQVHAKYLFATIQTISKEDTLHQFEPELFDYI 341 Query: 239 LIDEVHKAGARSYLKVIEHFKPKFLLGMTATPERTDDFNIYELFDYNIAYEIRLQEALEE 298 LIDEVHKAGA SY +VI++FKPKFL+GMTATPERTD+FNIYELFDYNIAYEIRLQEALEE Sbjct: 342 LIDEVHKAGASSYHRVIDYFKPKFLMGMTATPERTDNFNIYELFDYNIAYEIRLQEALEE 401 Query: 299 DMLCPFHYFGVTDFEYNGQIIDDTTLLSQLVTDERVSYLIEKIEYYGYSG 348 DMLCPFHYFGVTDFEYNG+ IDDTT LS+LVT+ERV +++EK++YYGYSG Sbjct: 402 DMLCPFHYFGVTDFEYNGEKIDDTTALSKLVTEERVDHVVEKVKYYGYSG 451 >C2QP44.1 C2QP44_BACCE Type III restriction protein res subunit Length = 962 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 226/350 (64%), Positives = 291/350 (83%), Gaps = 4/350 (1%) Query: 1 LLKITNVEVRLTDLSGFHAKGYVFQHEDHSTIIMGSSNLTAAALKVNYEWNVKLTSFKHG 60 L+K+ NVEVRLT+LSGFH+KGY+F ++ H +I+GSSNLTA ALKVNYEWNVKLTS + G Sbjct: 104 LMKLENVEVRLTNLSGFHSKGYIFDNKTHCALIVGSSNLTAHALKVNYEWNVKLTSHEDG 163 Query: 61 GLLGQFHSEFEKVWLNAVPLTNKWIELYQILYEEVQKVTRNDRLAMPFTPEKFPQTVSGL 120 ++ F ++FE+VW ++ LT + I Y+ +YE+V + DR+ P ++ ++ Sbjct: 164 EIVQHFKNQFEEVWEHSQVLTEELIGNYETIYEQVAENKLLDRVIE--LPGQYHNSIEEA 221 Query: 121 --VSPNKMQERALQNLKELRTTGAVKGLVISATGTGKTYLSAFDVKSFAPSRMLFVVHRE 178 ++PNKMQ+ AL+ ++ +R G KGLVISATGTGKTYLSAFDV++FAP RMLF+VHRE Sbjct: 222 LKINPNKMQQAALKEIQAIRDAGKEKGLVISATGTGKTYLSAFDVRNFAPKRMLFIVHRE 281 Query: 179 QILQKALADYQRILGGADSDFGILSGNSKETDAKYLFATIQTISQDSSLSNYNPEAFDYI 238 QIL KA +D+Q+ILGG D +FGILSG++K+ +AKYLFATIQTIS++ +L ++PE FDYI Sbjct: 282 QILNKAKSDFQKILGGIDENFGILSGSNKQINAKYLFATIQTISKEENLKQFDPELFDYI 341 Query: 239 LIDEVHKAGARSYLKVIEHFKPKFLLGMTATPERTDDFNIYELFDYNIAYEIRLQEALEE 298 LIDEVHKAGA SY +VI++FKPKFL+GMTATPERTD+FNIYELFDYNIAYEIRLQEALEE Sbjct: 342 LIDEVHKAGASSYHRVIDYFKPKFLMGMTATPERTDNFNIYELFDYNIAYEIRLQEALEE 401 Query: 299 DMLCPFHYFGVTDFEYNGQIIDDTTLLSQLVTDERVSYLIEKIEYYGYSG 348 DMLCPFHYFGVTDFEYNG+ IDDTT+LS+LVT+ERV +++EK++YYG+SG Sbjct: 402 DMLCPFHYFGVTDFEYNGEKIDDTTVLSKLVTEERVDHIVEKVKYYGFSG 451 >C2X7Y5.1 C2X7Y5_BACCE Type III restriction protein res subunit Length = 966 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 225/350 (64%), Positives = 291/350 (83%), Gaps = 4/350 (1%) Query: 1 LLKITNVEVRLTDLSGFHAKGYVFQHEDHSTIIMGSSNLTAAALKVNYEWNVKLTSFKHG 60 L+K+ NVEVRLT+LSGFH+KGY+F ++ H ++I+GSSNLTA ALKVNYEWNVKLTS + G Sbjct: 104 LMKLENVEVRLTNLSGFHSKGYIFDNKTHCSLIVGSSNLTAHALKVNYEWNVKLTSHEDG 163 Query: 61 GLLGQFHSEFEKVWLNAVPLTNKWIELYQILYEEVQKVTRNDRLAMPFTPEKFPQTVSGL 120 ++ F ++FE+VW ++ LT + I Y+ +YE+V + DR+ P ++ ++ Sbjct: 164 EIVQHFKNQFEEVWEHSQVLTEELIGNYETIYEQVAENKLLDRVIE--LPGQYHNSIEEA 221 Query: 121 --VSPNKMQERALQNLKELRTTGAVKGLVISATGTGKTYLSAFDVKSFAPSRMLFVVHRE 178 ++PNKMQ+ AL+ ++ +R G KGLVISATGTGKTYLSAFDV+SFAP RMLF+VHRE Sbjct: 222 LKITPNKMQQAALKEIQTIRDAGKEKGLVISATGTGKTYLSAFDVRSFAPKRMLFIVHRE 281 Query: 179 QILQKALADYQRILGGADSDFGILSGNSKETDAKYLFATIQTISQDSSLSNYNPEAFDYI 238 QIL KA +D+Q++LGG D DFGILSG++++ +AKYLFATIQTIS++ +L ++P FDYI Sbjct: 282 QILNKAKSDFQKVLGGVDEDFGILSGSNRQINAKYLFATIQTISKEENLHQFDPGLFDYI 341 Query: 239 LIDEVHKAGARSYLKVIEHFKPKFLLGMTATPERTDDFNIYELFDYNIAYEIRLQEALEE 298 LIDEVHKAGA SY +VI++FKPKFL+GMTATPERTD+FNIYELFDYNIAYEIRLQEALEE Sbjct: 342 LIDEVHKAGASSYHRVIDYFKPKFLMGMTATPERTDNFNIYELFDYNIAYEIRLQEALEE 401 Query: 299 DMLCPFHYFGVTDFEYNGQIIDDTTLLSQLVTDERVSYLIEKIEYYGYSG 348 DMLCPFHYFGVTDFEYNG+ IDDTT+LS+LVT+ERV +++EK++YYG+SG Sbjct: 402 DMLCPFHYFGVTDFEYNGEKIDDTTVLSKLVTEERVDHIVEKVKYYGFSG 451 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,280,424,687 Number of extensions: 95996615 Number of successful extensions: 238282 Number of sequences better than 1.0e-05: 790 Number of HSP's gapped: 237436 Number of HSP's successfully gapped: 791 Length of query: 375 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 238 Effective length of database: 1,770,017,148 Effective search space: 421264081224 Effective search space used: 421264081224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)