BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0435.0004.p (182 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0W6P1.1 C0W6P1_9ACTO NAD(P)H dehydrogenase (Quinone) 214 3e-54 P80871.2 GS14_BACSU General stress protein 14 EC=1.6.99.- 204 3e-51 C4KYU3.1 C4KYU3_EXISA NAD(P)H dehydrogenase (Quinone) 193 6e-48 A7Z1N5.1 A7Z1N5_BACA2 YrkL 192 7e-48 P54439.2 YRKL_BACSU Uncharacterized NAD(P)H oxidoreductase yrkL ... 191 3e-47 >C0W6P1.1 C0W6P1_9ACTO NAD(P)H dehydrogenase (Quinone) Length = 175 Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 104/174 (59%), Positives = 125/174 (71%), Gaps = 1/174 (0%) Query: 1 MKTLVLVFHPDLIASRVNRRLTDEMEKQDGVTVHRVYEVYPDEKIDVSAEHRLLEQHDRI 60 MKT VLVFHP + SRVN RLT E DGV V +Y +YPD +IDV AE R+LE DRI Sbjct: 1 MKTTVLVFHPSIATSRVNARLTHAAEAIDGVEVRYLYGLYPDFRIDVEAEQRVLEAADRI 60 Query: 61 VLQFPFYWYSTPSLLKKWEDAVLTYGWAYGSKGNKLHGKELLIAVSTGAAQENYRPDGNF 120 V QFP YWYS+P+LLK+WED VLTYGWAYGS G LHGKEL +AVS GAA E Y P G + Sbjct: 61 VWQFPLYWYSSPALLKQWEDDVLTYGWAYGSTGTALHGKELAVAVSPGAAAERYTPTGLY 120 Query: 121 KYTVPELLRPFQATSNLIGTRYLEPFIVYGVMQHLSDEELEQSAKEYVAYALNP 174 + TV +LL PF TS LIGTR++EPF+ G MQ +SD +LE+ A+ Y ++ P Sbjct: 121 QVTVDQLLLPFATTSKLIGTRFVEPFVTAGAMQ-ISDADLERQAEAYRSWLSAP 173 >P80871.2 GS14_BACSU General stress protein 14 EC=1.6.99.- Length = 175 Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 95/174 (54%), Positives = 124/174 (71%), Gaps = 1/174 (0%) Query: 1 MKTLVLVFHPDLIASRVNRRLTDEMEKQDGVTVHRVYEVYPDEKIDVSAEHRLLEQHDRI 60 MK LVL HP + S VN+ +E+ K D +TV +Y+ YPDE IDV+ E +L E++DRI Sbjct: 1 MKILVLAVHPHMETSVVNKAWAEELSKHDNITVRDLYKEYPDEAIDVAKEQQLCEEYDRI 60 Query: 61 VLQFPFYWYSTPSLLKKWEDAVLTYGWAYGSKGNKLHGKELLIAVSTGAAQENYRPDGNF 120 V QFP YWYS+P LLKKW+D VLTYGWA+GS+GN LHGKEL++AVSTG+ E Y+ G Sbjct: 61 VFQFPLYWYSSPPLLKKWQDLVLTYGWAFGSEGNALHGKELMLAVSTGSEAEKYQAGGAN 120 Query: 121 KYTVPELLRPFQATSNLIGTRYLEPFIVYGVMQHLSDEELEQSAKEYVAYALNP 174 Y++ ELL+PFQATSNLIG +YL P++ YGV + + E++ SAK Y P Sbjct: 121 HYSISELLKPFQATSNLIGMKYLPPYVFYGV-NYAAAEDISHSAKRLAEYIQQP 173 >C4KYU3.1 C4KYU3_EXISA NAD(P)H dehydrogenase (Quinone) Length = 178 Score = 193 bits (490), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 92/170 (54%), Positives = 122/170 (71%), Gaps = 1/170 (0%) Query: 1 MKTLVLVFHPDLIASRVNRRLTDEMEKQDGVTVHRVYEVYPDEKIDVSAEHRLLEQHDRI 60 M TLV++ HP+L SRVN+ + +E+ VTVH +Y YPD KIDV+ E +LL HDRI Sbjct: 1 MSTLVILAHPNLETSRVNKAWKEALEQHHEVTVHDLYATYPDFKIDVTREQQLLVSHDRI 60 Query: 61 VLQFPFYWYSTPSLLKKWEDAVLTYGWAYGSKGNKLHGKELLIAVSTGAAQENYRPDGNF 120 V QFPFYWYS+P+LLK+W+D VL+YGWAYG G +LHGKE ++AVSTG + YRPDG Sbjct: 61 VFQFPFYWYSSPALLKEWQDVVLSYGWAYGQSGTQLHGKEFVLAVSTGGPADAYRPDGYN 120 Query: 121 KYTVPELLRPFQATSNLIGTRYLEPFIVYGVMQHLSDEELEQSAKEYVAY 170 ++ + ELL PF+A +NL G YL P+I GV + L+ E+LE SA+ V + Sbjct: 121 RFMMEELLSPFRAMANLTGMTYLPPYIESGV-RTLTAEQLELSARHLVEH 169 >A7Z1N5.1 A7Z1N5_BACA2 YrkL Length = 174 Score = 192 bits (489), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 90/170 (52%), Positives = 123/170 (72%), Gaps = 1/170 (0%) Query: 1 MKTLVLVFHPDLIASRVNRRLTDEMEKQDGVTVHRVYEVYPDEKIDVSAEHRLLEQHDRI 60 MKTLV+V HP+L S VNR + +++++ +TVH +Y YP+ IDV E +LL H RI Sbjct: 1 MKTLVIVIHPNLETSVVNRTWMNRLKQENDITVHDLYGEYPNFIIDVEKEQQLLLDHGRI 60 Query: 61 VLQFPFYWYSTPSLLKKWEDAVLTYGWAYGSKGNKLHGKELLIAVSTGAAQENYRPDGNF 120 V QFP YWYS+P+LLK+WED VLT+GWAYG+ G KLHGKELL+A+S GA + +Y+ G + Sbjct: 61 VFQFPMYWYSSPALLKQWEDDVLTHGWAYGTGGTKLHGKELLLAISLGAQESDYQAGGEY 120 Query: 121 KYTVPELLRPFQATSNLIGTRYLEPFIVYGVMQHLSDEELEQSAKEYVAY 170 T+ EL+RPFQ T+N IG R+L F YG + HLS E+++ SA++ V Y Sbjct: 121 NITISELIRPFQVTANYIGMRFLPAFTQYGTL-HLSKEDVKNSAEKLVNY 169 >P54439.2 YRKL_BACSU Uncharacterized NAD(P)H oxidoreductase yrkL EC=1.6.99.- Length = 174 Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 89/170 (52%), Positives = 122/170 (71%), Gaps = 1/170 (0%) Query: 1 MKTLVLVFHPDLIASRVNRRLTDEMEKQDGVTVHRVYEVYPDEKIDVSAEHRLLEQHDRI 60 MKTLV+V HP+L S VN+ + ++++ +TVH +Y YP+ IDV E +LL H+RI Sbjct: 1 MKTLVIVIHPNLETSVVNKTWMNRLKQEKDITVHDLYGEYPNFIIDVEKEQQLLLDHERI 60 Query: 61 VLQFPFYWYSTPSLLKKWEDAVLTYGWAYGSKGNKLHGKELLIAVSTGAAQENYRPDGNF 120 V QFP YWYS+P+LLK+WED VLT+GWAYG+ G KLHGKELL+A+S GA + +Y+ G + Sbjct: 61 VFQFPMYWYSSPALLKQWEDDVLTHGWAYGTGGTKLHGKELLLAISLGAQESDYQAGGEY 120 Query: 121 KYTVPELLRPFQATSNLIGTRYLEPFIVYGVMQHLSDEELEQSAKEYVAY 170 T+ EL+RPFQ T+N IG R+L F YG + HLS E+++ SA+ V Y Sbjct: 121 NITISELIRPFQVTANYIGMRFLPAFTQYGTL-HLSKEDVKNSAERLVDY 169 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,128,880,385 Number of extensions: 45532981 Number of successful extensions: 102208 Number of sequences better than 1.0e-05: 813 Number of HSP's gapped: 101905 Number of HSP's successfully gapped: 813 Length of query: 182 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 55 Effective length of database: 1,864,227,298 Effective search space: 102532501390 Effective search space used: 102532501390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)