BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0434.0031.p
         (104 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KEI0.1 B3KEI0_9BACI CheC domain protein                             166   7e-40
B1D7B0.1 B1D7B0_9BACL CheC domain protein                             142   1e-32
C0Z9J6.1 C0Z9J6_BREBN Putative CheY-P phosphatase                     127   4e-28
B4B9Z9.1 B4B9Z9_CLOTM CheC domain protein                              93   8e-18
A3DBN8.1 A3DBN8_CLOTH CheC-like protein                                92   2e-17

>B3KEI0.1 B3KEI0_9BACI CheC domain protein
          Length = 152

 Score =  166 bits (420), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 85/105 (80%), Positives = 96/105 (91%), Gaps = 1/105 (0%)

Query: 1   MTGQLSGDIIFGIAEQVALKIVSAMMGGYVITEMDEMGQSAISELGNMISGNASTILSNQ 60
           MTGQ++GDI+FGI EQVAL++VS MMGGYVITEMDEMGQSAISELGNMISGNASTILSNQ
Sbjct: 48  MTGQMNGDIVFGIQEQVALQMVSVMMGGYVITEMDEMGQSAISELGNMISGNASTILSNQ 107

Query: 61  GVSVDITPPKLVKTEGMAVL-PRKALSIPLLMEGIGELDIQVMIS 104
           GVSVDITPPK++K++  + L  +KAL IPL MEGIGELDIQVMIS
Sbjct: 108 GVSVDITPPKVMKSDSTSSLIQKKALCIPLRMEGIGELDIQVMIS 152


>B1D7B0.1 B1D7B0_9BACL CheC domain protein
          Length = 153

 Score =  142 bits (357), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 94/105 (89%), Gaps = 1/105 (0%)

Query: 1   MTGQLSGDIIFGIAEQVALKIVSAMMGGYVITEMDEMGQSAISELGNMISGNASTILSNQ 60
           + GQ++GDI+FG++EQVALK+VSAMMGG++I+E+DE+G+SAISELGNMISGNAST+L NQ
Sbjct: 48  INGQMNGDIVFGLSEQVALKMVSAMMGGFIISELDEIGRSAISELGNMISGNASTMLFNQ 107

Query: 61  GVSVDITPPKLVKTEGMAVLPR-KALSIPLLMEGIGELDIQVMIS 104
           GVSVDITPP+++++     L   +AL++PL+M+GIG+ DIQV+++
Sbjct: 108 GVSVDITPPRIIQSASAESLSAGQALTVPLIMDGIGQFDIQVLVA 152


>C0Z9J6.1 C0Z9J6_BREBN Putative CheY-P phosphatase
          Length = 152

 Score =  127 bits (318), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 80/103 (77%)

Query: 1   MTGQLSGDIIFGIAEQVALKIVSAMMGGYVITEMDEMGQSAISELGNMISGNASTILSNQ 60
           MTGQL G++ FG+ E++AL+IVSAMMGGY + EMDE+G+SAISELGNMISGNAST+LSN+
Sbjct: 48  MTGQLQGEVFFGLQEELALRIVSAMMGGYPVQEMDELGKSAISELGNMISGNASTLLSNR 107

Query: 61  GVSVDITPPKLVKTEGMAVLPRKALSIPLLMEGIGELDIQVMI 103
           GV VDITPP  +    +  +   AL  PL +  +G LDIQ+++
Sbjct: 108 GVIVDITPPLFLHQHDLKDMAGTALIAPLDLHDMGRLDIQIIV 150


>B4B9Z9.1 B4B9Z9_CLOTM CheC domain protein
          Length = 154

 Score = 92.8 bits (229), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 4/106 (3%)

Query: 1   MTGQLSGDIIFGIAEQVALKIVSAMMGGYVITEMDEMGQSAISELGNMISGNASTILSNQ 60
           +TG++ G  IF + + VAL + S MMGG  +TE+DEM +SA+SEL NMI GN +T+L N+
Sbjct: 48  LTGKIRGQAIFSMNKNVALTVASGMMGGLNLTELDEMSKSALSELTNMILGNTATLLYNR 107

Query: 61  GVSVDITPPKLVKTEGMAVLPR--KALSIPLLM--EGIGELDIQVM 102
           GV V+ITPP  +  E M + P   K + IPLL+  +   ELDI V+
Sbjct: 108 GVGVEITPPSFLMGENMQISPSKMKTICIPLLLGEDKKIELDISVV 153


>A3DBN8.1 A3DBN8_CLOTH CheC-like protein
          Length = 154

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 70/106 (66%), Gaps = 4/106 (3%)

Query: 1   MTGQLSGDIIFGIAEQVALKIVSAMMGGYVITEMDEMGQSAISELGNMISGNASTILSNQ 60
           +TG++ G  IF + + VAL   S MMGG  +TE+DEM +SA+SEL NMI GN +T+L N+
Sbjct: 48  LTGKIRGQAIFSMNKNVALTAASGMMGGLNLTELDEMSKSALSELTNMILGNTATLLYNR 107

Query: 61  GVSVDITPPKLVKTEGMAVLPR--KALSIPLLM--EGIGELDIQVM 102
           GV V+ITPP  +  E M + P   K + IPLL+  +   ELDI V+
Sbjct: 108 GVGVEITPPSFLMGENMQISPSKMKTICIPLLLGEDKKIELDISVV 153


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 521,811,422
Number of extensions: 16765247
Number of successful extensions: 52298
Number of sequences better than 1.0e-05: 66
Number of HSP's gapped: 52322
Number of HSP's successfully gapped: 66
Length of query: 104
Length of database: 3,060,696,203
Length adjustment: 72
Effective length of query: 32
Effective length of database: 2,382,383,123
Effective search space: 76236259936
Effective search space used: 76236259936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)