BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0434.0020.p (254 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEI7.1 B3KEI7_9BACI Succinate dehydrogenase and fumarate reduc... 477 e-133 P70934.1 P70934_PAEMA Succinate dehydrogenase subunit B 474 e-132 B1DDK7.1 B1DDK7_9BACL Succinate dehydrogenase and fumarate reduc... 441 e-122 Q5KWI0.1 Q5KWI0_GEOKA Succinate dehydrogenase (Iron-sulfur prote... 422 e-116 C3IXZ0.1 C3IXZ0_9BACI Succinate dehydrogenase and fumarate reduc... 422 e-116 >B3KEI7.1 B3KEI7_9BACI Succinate dehydrogenase and fumarate reductase iron-sulfur protein Length = 254 Score = 477 bits (1227), Expect = e-133, Method: Compositional matrix adjust. Identities = 221/254 (87%), Positives = 242/254 (95%) Query: 1 MAETAAAPKNVKFVITRQDEPDTAPYTEEFELAYRPGMNVISALMEIQRNPVNAKGDSTV 60 M++TAAA K+VKF+ITRQD P+T YTEEFE+ YRPGMNVISALMEIQRNP NA+G +T Sbjct: 1 MSQTAAASKSVKFIITRQDNPETNSYTEEFEIPYRPGMNVISALMEIQRNPKNAQGQTTA 60 Query: 61 PVCWESNCLEEVCGACSMVINGKPRQACAALIDNLEQPVRIEPMRTFPVVRDLVIDRSRM 120 PVCW+SNCLEEVCGACSMVINGKPRQACAALID LEQP+RI+PM+TFPVVRDLVIDRSRM Sbjct: 61 PVCWDSNCLEEVCGACSMVINGKPRQACAALIDKLEQPIRIQPMKTFPVVRDLVIDRSRM 120 Query: 121 FGALKRVKAWIPIDGTYDLGPGPRMAEKKRQWAYELSKCMTCGVCLEACPNVNEKTNFIG 180 F ALKRVKAWIPIDGTYDLGPGP+MAEKKRQWAYELSKCMTCGVCLEACPNVNEKT+FIG Sbjct: 121 FTALKRVKAWIPIDGTYDLGPGPKMAEKKRQWAYELSKCMTCGVCLEACPNVNEKTDFIG 180 Query: 181 PAAISQVRLFNAHPTGEMNADERLDALMEDGGIDGCGNSQNCVRACPKGIPLTTSIAEIN 240 PAAISQVRLFNAHPTGEMN +ERL+ALM+DGGI+GCGNSQNCVR+CPKGIPLTTSIAE+N Sbjct: 181 PAAISQVRLFNAHPTGEMNKEERLEALMQDGGIEGCGNSQNCVRSCPKGIPLTTSIAEMN 240 Query: 241 KQTTKHMFKRWLGV 254 K TTKH+FKRWLGV Sbjct: 241 KDTTKHLFKRWLGV 254 >P70934.1 P70934_PAEMA Succinate dehydrogenase subunit B Length = 261 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 228/257 (88%), Positives = 237/257 (92%), Gaps = 5/257 (1%) Query: 1 MAETAAA-----PKNVKFVITRQDEPDTAPYTEEFELAYRPGMNVISALMEIQRNPVNAK 55 MAET AA K VKF+ITRQD+P++ PYTEEFEL YRP MNVISALMEIQRNPVN K Sbjct: 3 MAETEAAVKQKSGKKVKFIITRQDDPNSQPYTEEFELDYRPNMNVISALMEIQRNPVNQK 62 Query: 56 GDSTVPVCWESNCLEEVCGACSMVINGKPRQACAALIDNLEQPVRIEPMRTFPVVRDLVI 115 G+ T PVCWESNCLEEVCGACSMVINGKPRQACAALID LEQPVRIEPMRTFPVVRDLVI Sbjct: 63 GEHTAPVCWESNCLEEVCGACSMVINGKPRQACAALIDQLEQPVRIEPMRTFPVVRDLVI 122 Query: 116 DRSRMFGALKRVKAWIPIDGTYDLGPGPRMAEKKRQWAYELSKCMTCGVCLEACPNVNEK 175 DRSRMF ALKRVKAWIPIDGTYDLGPGPRM EKKRQWAYELSKCMTCGVCLEACPNVNEK Sbjct: 123 DRSRMFNALKRVKAWIPIDGTYDLGPGPRMPEKKRQWAYELSKCMTCGVCLEACPNVNEK 182 Query: 176 TNFIGPAAISQVRLFNAHPTGEMNADERLDALMEDGGIDGCGNSQNCVRACPKGIPLTTS 235 T+FIGPAAISQVRLFNAHPTG MNADERLDALMEDGGI+GCGNSQNCVRACPKGIPLTTS Sbjct: 183 TDFIGPAAISQVRLFNAHPTGAMNADERLDALMEDGGIEGCGNSQNCVRACPKGIPLTTS 242 Query: 236 IAEINKQTTKHMFKRWL 252 IAE+N+ TTK MFKRWL Sbjct: 243 IAEMNRDTTKRMFKRWL 259 >B1DDK7.1 B1DDK7_9BACL Succinate dehydrogenase and fumarate reductase iron-sulfur protein Length = 252 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/253 (81%), Positives = 227/253 (89%), Gaps = 1/253 (0%) Query: 1 MAETAAAPKNVKFVITRQDEPDTAPYTEEFELAYRPGMNVISALMEIQRNPVNAKGDSTV 60 MA+T A K VKFVITRQD PD+APYTEEFE+ YR MNVIS LMEIQRNP + G +T Sbjct: 1 MAQTTAT-KTVKFVITRQDGPDSAPYTEEFEIPYRANMNVISGLMEIQRNPKKSDGGNTA 59 Query: 61 PVCWESNCLEEVCGACSMVINGKPRQACAALIDNLEQPVRIEPMRTFPVVRDLVIDRSRM 120 PVCWESNCLEEVCGACSMVINGKPRQAC+ALID LEQP+R+EPMRTFPVVRDLVI+R RM Sbjct: 60 PVCWESNCLEEVCGACSMVINGKPRQACSALIDKLEQPIRLEPMRTFPVVRDLVINRERM 119 Query: 121 FGALKRVKAWIPIDGTYDLGPGPRMAEKKRQWAYELSKCMTCGVCLEACPNVNEKTNFIG 180 F ALKRVKAWIPIDGTYDLGPGPR+AE+KRQWAYELSKCMTCGVC+EACPNVN++ +FIG Sbjct: 120 FNALKRVKAWIPIDGTYDLGPGPRLAEEKRQWAYELSKCMTCGVCMEACPNVNDRNSFIG 179 Query: 181 PAAISQVRLFNAHPTGEMNADERLDALMEDGGIDGCGNSQNCVRACPKGIPLTTSIAEIN 240 P AISQVRLFN HPTGEMN ERL+ LMEDGGI+GCGNSQNCVR+CPKGIPLTTSIA IN Sbjct: 180 PQAISQVRLFNVHPTGEMNKAERLETLMEDGGIEGCGNSQNCVRSCPKGIPLTTSIAAIN 239 Query: 241 KQTTKHMFKRWLG 253 + TTK +FK+WLG Sbjct: 240 RDTTKQLFKKWLG 252 >Q5KWI0.1 Q5KWI0_GEOKA Succinate dehydrogenase (Iron-sulfur protein) EC=1.3.99.1 Length = 253 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 195/245 (79%), Positives = 217/245 (88%) Query: 9 KNVKFVITRQDEPDTAPYTEEFELAYRPGMNVISALMEIQRNPVNAKGDSTVPVCWESNC 68 K V+ +ITRQD PD+APY EEF + YRP MNVISALMEI+RNPVNAKG+ T PV WE NC Sbjct: 5 KTVRLIITRQDRPDSAPYEEEFVIPYRPNMNVISALMEIRRNPVNAKGEKTTPVAWEMNC 64 Query: 69 LEEVCGACSMVINGKPRQACAALIDNLEQPVRIEPMRTFPVVRDLVIDRSRMFGALKRVK 128 LEEVCGACSMVINGKPRQACAALID LEQP+R+EPMRTFPV+RDLVIDRSRMF ALKRVK Sbjct: 65 LEEVCGACSMVINGKPRQACAALIDKLEQPIRLEPMRTFPVIRDLVIDRSRMFDALKRVK 124 Query: 129 AWIPIDGTYDLGPGPRMAEKKRQWAYELSKCMTCGVCLEACPNVNEKTNFIGPAAISQVR 188 AWIPIDGTYDLGPGPRM E+KRQWAYELSKCMTCGVCLEACPNVN K+NFIGPA +SQVR Sbjct: 125 AWIPIDGTYDLGPGPRMPERKRQWAYELSKCMTCGVCLEACPNVNSKSNFIGPAPLSQVR 184 Query: 189 LFNAHPTGEMNADERLDALMEDGGIDGCGNSQNCVRACPKGIPLTTSIAEINKQTTKHMF 248 LFNAHPTG M+ ERL A+M DGG+ CGNSQNCV++CPKGIPLTTSIA +N++TT MF Sbjct: 185 LFNAHPTGAMHKAERLRAIMGDGGLANCGNSQNCVQSCPKGIPLTTSIAALNRETTIQMF 244 Query: 249 KRWLG 253 + + G Sbjct: 245 RDFFG 249 >C3IXZ0.1 C3IXZ0_9BACI Succinate dehydrogenase and fumarate reductase iron-sulfur protein Length = 253 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 195/245 (79%), Positives = 217/245 (88%) Query: 9 KNVKFVITRQDEPDTAPYTEEFELAYRPGMNVISALMEIQRNPVNAKGDSTVPVCWESNC 68 K V+ +ITRQD PD+APY EEF + YRP MNVISALMEI+RNPVNAKG+ T PV WE NC Sbjct: 5 KTVRLIITRQDRPDSAPYEEEFVIPYRPNMNVISALMEIRRNPVNAKGEKTTPVAWEMNC 64 Query: 69 LEEVCGACSMVINGKPRQACAALIDNLEQPVRIEPMRTFPVVRDLVIDRSRMFGALKRVK 128 LEEVCGACSMVINGKPRQACAALID LEQP+R+EPMRTFPV+RDLVIDRSRMF ALKRVK Sbjct: 65 LEEVCGACSMVINGKPRQACAALIDKLEQPIRLEPMRTFPVIRDLVIDRSRMFDALKRVK 124 Query: 129 AWIPIDGTYDLGPGPRMAEKKRQWAYELSKCMTCGVCLEACPNVNEKTNFIGPAAISQVR 188 AWIPIDGTYDLGPGPRM E+KRQWAYELSKCMTCGVCLEACPNVN K+NFIGPA +SQVR Sbjct: 125 AWIPIDGTYDLGPGPRMPERKRQWAYELSKCMTCGVCLEACPNVNSKSNFIGPAPLSQVR 184 Query: 189 LFNAHPTGEMNADERLDALMEDGGIDGCGNSQNCVRACPKGIPLTTSIAEINKQTTKHMF 248 LFNAHPTG M+ ERL A+M DGG+ CGNSQNCV++CPKGIPLTTSIA +N++TT MF Sbjct: 185 LFNAHPTGAMHKAERLRAIMGDGGLANCGNSQNCVQSCPKGIPLTTSIAALNRETTIQMF 244 Query: 249 KRWLG 253 + + G Sbjct: 245 RDFFG 249 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,563,795,098 Number of extensions: 63285497 Number of successful extensions: 164808 Number of sequences better than 1.0e-05: 1906 Number of HSP's gapped: 160246 Number of HSP's successfully gapped: 1908 Length of query: 254 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 121 Effective length of database: 1,807,701,208 Effective search space: 218731846168 Effective search space used: 218731846168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)