BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0434.0019.p (580 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEI8.1 B3KEI8_9BACI Succinate dehydrogenase or fumarate reduct... 1116 0.0 P70933.1 P70933_PAEMA Succinate dehydrogenase subunit A 1092 0.0 B1DDK8.1 B1DDK8_9BACL Succinate dehydrogenase or fumarate reduct... 1064 0.0 C3IXY9.1 C3IXY9_9BACI Succinate dehydrogenase or fumarate reduct... 990 0.0 B7Y684.1 B7Y684_9BACI Succinate dehydrogenase or fumarate reduct... 990 0.0 >B3KEI8.1 B3KEI8_9BACI Succinate dehydrogenase or fumarate reductase, flavoprotein subunit EC=1.3.99.1 Length = 580 Score = 1116 bits (2887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/578 (91%), Positives = 553/578 (95%) Query: 3 SADIIIVGGGLAGLMATIKAAESGAHVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSP 62 +++II+VGGGLAGLMATIKAAE+GAHVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSP Sbjct: 2 ASNIIVVGGGLAGLMATIKAAEAGAHVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSP 61 Query: 63 WEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTKRH 122 WEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTKRH Sbjct: 62 WEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTKRH 121 Query: 123 RTAFAGATTGQQLLYALDEQVRRWEAEGMVTKSENWEFLSVILDDERVCRGISAQNLKTM 182 RTAFAGATTGQQLLYALDEQVRRWE G+VTK ENWEFL+ ++DDE VCRGI+AQ+L++M Sbjct: 122 RTAFAGATTGQQLLYALDEQVRRWETAGLVTKYENWEFLNAVIDDEGVCRGIAAQDLRSM 181 Query: 183 EIQTFPADAVILASGGPGIIFGKTTNSVINTGTAASAVYQQGVYYANGEFIQIHPTAIPG 242 EI++F A+AVILASGGPGIIFGKTTNSVINTGTAASAVYQQGV+YANGEFIQIHPTAIPG Sbjct: 182 EIKSFKAEAVILASGGPGIIFGKTTNSVINTGTAASAVYQQGVHYANGEFIQIHPTAIPG 241 Query: 243 DDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPSYGNLVPRDIATREIFNVCVDQGLG 302 DDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYP+YGNLVPRDIATREIF+VCVD GLG Sbjct: 242 DDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFSVCVDMGLG 301 Query: 303 INGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWVDY 362 INGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWVDY Sbjct: 302 INGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWVDY 361 Query: 363 NQMTNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMVSGPKAVEYIKGLKKSVQDISS 422 NQMTNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMV+GPKA+EY+KGLKKS +D+SS Sbjct: 362 NQMTNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMVAGPKAIEYVKGLKKSAEDVSS 421 Query: 423 TVFDSFHKTQTDKYESLLAMSGTENAYVIHKELGEWMTANMTVVRENTKLTATIGKIKEL 482 TVFD K QT KYE LL M GTENAYVIHKELGEWMT NMTVVR N KL ATIGKIKEL Sbjct: 422 TVFDRAAKEQTTKYEGLLKMEGTENAYVIHKELGEWMTNNMTVVRYNDKLEATIGKIKEL 481 Query: 483 KERYRRINMNDTSRWNNQGVAFTRQLWNMLELSEAMTLGALLRNESRGAHYKPEFPARND 542 K+RYR INM DTSRWNNQGVAFTRQLWNMLELSEAMTLGALLRNESRGAHYKPEFP RND Sbjct: 482 KQRYRNINMTDTSRWNNQGVAFTRQLWNMLELSEAMTLGALLRNESRGAHYKPEFPDRND 541 Query: 543 EEFLKTTKAAWTADGPQISYEEVDVSLIPPRVRDYSKD 580 E+FLKTTKA WT DGPQISYEEVDVSLIPPR+RDYSKD Sbjct: 542 EDFLKTTKATWTPDGPQISYEEVDVSLIPPRIRDYSKD 579 >P70933.1 P70933_PAEMA Succinate dehydrogenase subunit A Length = 581 Score = 1092 bits (2825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 516/580 (88%), Positives = 546/580 (94%) Query: 1 MASADIIIVGGGLAGLMATIKAAESGAHVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGD 60 MA +I+VGGGLAGLMATIK+AE+G VHLFSLVPVKRSHSVCAQGGINGAVNTKGEGD Sbjct: 1 MAKQSVIVVGGGLAGLMATIKSAEAGVPVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGD 60 Query: 61 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTK 120 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTK Sbjct: 61 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTK 120 Query: 121 RHRTAFAGATTGQQLLYALDEQVRRWEAEGMVTKSENWEFLSVILDDERVCRGISAQNLK 180 HRTAFAGATTGQQLLYALDEQVRR EA G+VTK ENWEFLSV+LDD+ VCRGI+AQNL+ Sbjct: 121 HHRTAFAGATTGQQLLYALDEQVRRHEAAGLVTKYENWEFLSVVLDDDGVCRGITAQNLR 180 Query: 181 TMEIQTFPADAVILASGGPGIIFGKTTNSVINTGTAASAVYQQGVYYANGEFIQIHPTAI 240 +MEI TF +DAVILA+GGPGIIFGKTTNSVINTGTAASAVYQQGV+YANGEFIQIHPTAI Sbjct: 181 SMEIVTFASDAVILATGGPGIIFGKTTNSVINTGTAASAVYQQGVHYANGEFIQIHPTAI 240 Query: 241 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPSYGNLVPRDIATREIFNVCVDQG 300 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYP+YGNLVPRDIATREIF+VCVDQ Sbjct: 241 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFHVCVDQK 300 Query: 301 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWV 360 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWV Sbjct: 301 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWV 360 Query: 361 DYNQMTNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMVSGPKAVEYIKGLKKSVQDI 420 DYNQMTNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMV+GPKAVEYI+GLKKS DI Sbjct: 361 DYNQMTNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMVAGPKAVEYIRGLKKSADDI 420 Query: 421 SSTVFDSFHKTQTDKYESLLAMSGTENAYVIHKELGEWMTANMTVVRENTKLTATIGKIK 480 VFD + K Q DK+E LL M+G+ENAYV+HKELGEWMT NMTVVR N +L ATI KIK Sbjct: 421 RPDVFDRYRKAQEDKFEGLLNMNGSENAYVLHKELGEWMTDNMTVVRYNDRLEATINKIK 480 Query: 481 ELKERYRRINMNDTSRWNNQGVAFTRQLWNMLELSEAMTLGALLRNESRGAHYKPEFPAR 540 ELKERY++IN+NDTSRWNN G AFTRQLWNMLEL+EAMTLGALLRNESRGAHYKP+FP R Sbjct: 481 ELKERYKKININDTSRWNNAGAAFTRQLWNMLELAEAMTLGALLRNESRGAHYKPDFPNR 540 Query: 541 NDEEFLKTTKAAWTADGPQISYEEVDVSLIPPRVRDYSKD 580 NDEEFLKTTKA WT DGPQISYE+VDVSLIPPR+RDYSKD Sbjct: 541 NDEEFLKTTKATWTPDGPQISYEDVDVSLIPPRIRDYSKD 580 >B1DDK8.1 B1DDK8_9BACL Succinate dehydrogenase or fumarate reductase, flavoprotein subunit EC=1.3.99.1 Length = 585 Score = 1064 bits (2752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/580 (86%), Positives = 538/580 (92%) Query: 1 MASADIIIVGGGLAGLMATIKAAESGAHVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGD 60 MA II+VGGGLAGLMAT+KAAE+G HV LFSLVPVKRSHSVCAQGGINGAVNTKGEGD Sbjct: 1 MAKNKIIVVGGGLAGLMATVKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGD 60 Query: 61 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTK 120 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMF+RTPEGLLDFRRFGGT+ Sbjct: 61 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFSRTPEGLLDFRRFGGTQ 120 Query: 121 RHRTAFAGATTGQQLLYALDEQVRRWEAEGMVTKSENWEFLSVILDDERVCRGISAQNLK 180 HRTAFAGATTGQQLLYALDEQVRRWEA G+VTK E+WEFL +LDDE +CRG+SAQ+L+ Sbjct: 121 YHRTAFAGATTGQQLLYALDEQVRRWEAAGLVTKYEHWEFLGSVLDDEGICRGVSAQSLR 180 Query: 181 TMEIQTFPADAVILASGGPGIIFGKTTNSVINTGTAASAVYQQGVYYANGEFIQIHPTAI 240 TME+ TF DAVILASGGPGIIFGKTTNSVINTGTAASAVYQQGV+YANGEFIQIHPTAI Sbjct: 181 TMEVHTFVGDAVILASGGPGIIFGKTTNSVINTGTAASAVYQQGVHYANGEFIQIHPTAI 240 Query: 241 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPSYGNLVPRDIATREIFNVCVDQG 300 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYP+YGNLVPRDIATREIF+VCVD Sbjct: 241 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFSVCVDDK 300 Query: 301 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWV 360 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWV Sbjct: 301 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWV 360 Query: 361 DYNQMTNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMVSGPKAVEYIKGLKKSVQDI 420 DYNQMTNIPGLFAAGEC+YQYHGANRLGANSL+SAI+GGMV+GPKAVEYIKGLKKS +DI Sbjct: 361 DYNQMTNIPGLFAAGECDYQYHGANRLGANSLLSAIFGGMVAGPKAVEYIKGLKKSSEDI 420 Query: 421 SSTVFDSFHKTQTDKYESLLAMSGTENAYVIHKELGEWMTANMTVVRENTKLTATIGKIK 480 SS+VFD K Q DKY +L M+GTENAYVIHKELGEWMT NMTVVR N KL TI KIK Sbjct: 421 SSSVFDREKKRQEDKYNRILGMNGTENAYVIHKELGEWMTNNMTVVRFNDKLQQTIDKIK 480 Query: 481 ELKERYRRINMNDTSRWNNQGVAFTRQLWNMLELSEAMTLGALLRNESRGAHYKPEFPAR 540 ELK+RY+ IN+ND+ +WNN VAFTRQLWNMLELSEAMTLGALLR+ESRGAHYKP+FP R Sbjct: 481 ELKQRYQNININDSLKWNNSSVAFTRQLWNMLELSEAMTLGALLRDESRGAHYKPDFPDR 540 Query: 541 NDEEFLKTTKAAWTADGPQISYEEVDVSLIPPRVRDYSKD 580 NDE+FLKTTKA WT +GPQISYE+VD SLI PR RDY+ + Sbjct: 541 NDEDFLKTTKATWTPEGPQISYEDVDTSLIKPRKRDYTAN 580 >C3IXY9.1 C3IXY9_9BACI Succinate dehydrogenase or fumarate reductase, flavoprotein subunit EC=1.3.99.1 Length = 585 Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/579 (79%), Positives = 520/579 (89%) Query: 1 MASADIIIVGGGLAGLMATIKAAESGAHVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGD 60 M II+VGGGLAGLMATIK AE+G V LFSLVPVKRSHSVCAQGGINGAVNTKGEGD Sbjct: 1 MKKGKIIVVGGGLAGLMATIKIAEAGVPVELFSLVPVKRSHSVCAQGGINGAVNTKGEGD 60 Query: 61 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTK 120 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGII+++DRMGVMFNRTPEGLLDFRRFGGT+ Sbjct: 61 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIYMLDRMGVMFNRTPEGLLDFRRFGGTQ 120 Query: 121 RHRTAFAGATTGQQLLYALDEQVRRWEAEGMVTKSENWEFLSVILDDERVCRGISAQNLK 180 HRTA+AGATTGQQ+LYALDEQVRR E G+VTK E+WEFL V+LDDE++CRGI AQ+L+ Sbjct: 121 HHRTAYAGATTGQQILYALDEQVRRHEVAGLVTKYEHWEFLGVVLDDEQICRGIVAQDLR 180 Query: 181 TMEIQTFPADAVILASGGPGIIFGKTTNSVINTGTAASAVYQQGVYYANGEFIQIHPTAI 240 +MEI+ FPADAVILA+GGPGIIFGK+TNSVINTG+AAS YQQGVYYANGEFIQIHPTAI Sbjct: 181 SMEIKAFPADAVILATGGPGIIFGKSTNSVINTGSAASIAYQQGVYYANGEFIQIHPTAI 240 Query: 241 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPSYGNLVPRDIATREIFNVCVDQG 300 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYP+YGNLVPRDIA REIF+VCVD Sbjct: 241 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPAYGNLVPRDIAAREIFHVCVDLK 300 Query: 301 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWV 360 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMG+DPRK+PMK+FPAVHYSMGG+WV Sbjct: 301 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGEDPRKVPMKVFPAVHYSMGGLWV 360 Query: 361 DYNQMTNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMVSGPKAVEYIKGLKKSVQDI 420 DY+QMTNI GLFAAGEC+Y HGANRLGANSL+SAIYGGMV+GP AV YI+GL+KS + Sbjct: 361 DYDQMTNIKGLFAAGECDYSIHGANRLGANSLLSAIYGGMVAGPNAVRYIRGLEKSADAM 420 Query: 421 SSTVFDSFHKTQTDKYESLLAMSGTENAYVIHKELGEWMTANMTVVRENTKLTATIGKIK 480 ST++DS+ K + +K+E++LAM GTENAYV+HKELGEWMTAN+T+VR N +L T KI+ Sbjct: 421 PSTLYDSYVKREQEKWENILAMDGTENAYVLHKELGEWMTANVTIVRYNDRLLKTDEKIQ 480 Query: 481 ELKERYRRINMNDTSRWNNQGVAFTRQLWNMLELSEAMTLGALLRNESRGAHYKPEFPAR 540 EL ERY+ I++ DTSRW+NQG F RQL+NML+L+ +TLGA RNESRGAHYKPEFP R Sbjct: 481 ELMERYKNISVTDTSRWSNQGATFIRQLYNMLQLARVITLGAYYRNESRGAHYKPEFPER 540 Query: 541 NDEEFLKTTKAAWTADGPQISYEEVDVSLIPPRVRDYSK 579 NDEE+LKTT A +T DGP YE+VDVSLI PR RDYSK Sbjct: 541 NDEEWLKTTMARYTPDGPSFHYEDVDVSLIKPRKRDYSK 579 >B7Y684.1 B7Y684_9BACI Succinate dehydrogenase or fumarate reductase, flavoprotein subunit EC=1.3.99.1 Length = 585 Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/579 (79%), Positives = 520/579 (89%) Query: 1 MASADIIIVGGGLAGLMATIKAAESGAHVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGD 60 M II+VGGGLAGLMATIK AE+G V LFSLVPVKRSHSVCAQGGINGAVNTKGEGD Sbjct: 1 MKKGKIIVVGGGLAGLMATIKIAEAGVPVELFSLVPVKRSHSVCAQGGINGAVNTKGEGD 60 Query: 61 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTK 120 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGII+++DRMGVMFNRTPEGLLDFRRFGGT+ Sbjct: 61 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIYMLDRMGVMFNRTPEGLLDFRRFGGTQ 120 Query: 121 RHRTAFAGATTGQQLLYALDEQVRRWEAEGMVTKSENWEFLSVILDDERVCRGISAQNLK 180 HRTA+AGATTGQQ+LYALDEQVRR E G+VTK E+WEFL V+LDDE++CRGI AQ+L+ Sbjct: 121 HHRTAYAGATTGQQILYALDEQVRRHEVAGLVTKYEHWEFLGVVLDDEQICRGIVAQDLR 180 Query: 181 TMEIQTFPADAVILASGGPGIIFGKTTNSVINTGTAASAVYQQGVYYANGEFIQIHPTAI 240 +MEI+ FPADAVILA+GGPGIIFGK+TNSVINTG+AAS YQQGVYYANGEFIQIHPTAI Sbjct: 181 SMEIKAFPADAVILATGGPGIIFGKSTNSVINTGSAASIAYQQGVYYANGEFIQIHPTAI 240 Query: 241 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPSYGNLVPRDIATREIFNVCVDQG 300 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYP+YGNLVPRDIA REIF+VCVD Sbjct: 241 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPAYGNLVPRDIAAREIFHVCVDLK 300 Query: 301 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWV 360 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMG+DPRK+PMK+FPAVHYSMGG+WV Sbjct: 301 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGEDPRKVPMKVFPAVHYSMGGLWV 360 Query: 361 DYNQMTNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMVSGPKAVEYIKGLKKSVQDI 420 DY+QMTNI GLFAAGEC+Y HGANRLGANSL+SAIYGGMV+GP AV YI+GL+KS + Sbjct: 361 DYDQMTNIKGLFAAGECDYSIHGANRLGANSLLSAIYGGMVAGPNAVRYIRGLEKSADAM 420 Query: 421 SSTVFDSFHKTQTDKYESLLAMSGTENAYVIHKELGEWMTANMTVVRENTKLTATIGKIK 480 ST++DS+ K + +K+E++LAM GTENAYV+HKELGEWMTAN+T+VR N +L T KI+ Sbjct: 421 PSTLYDSYVKREQEKWENILAMDGTENAYVLHKELGEWMTANVTIVRYNDRLLKTDEKIQ 480 Query: 481 ELKERYRRINMNDTSRWNNQGVAFTRQLWNMLELSEAMTLGALLRNESRGAHYKPEFPAR 540 EL ERY+ I++ DTSRW+NQG F RQL+NML+L+ +TLGA RNESRGAHYKPEFP R Sbjct: 481 ELMERYKNISVTDTSRWSNQGATFIRQLYNMLQLARVITLGAYYRNESRGAHYKPEFPER 540 Query: 541 NDEEFLKTTKAAWTADGPQISYEEVDVSLIPPRVRDYSK 579 NDEE+LKTT A +T DGP YE+VDVSLI PR RDYSK Sbjct: 541 NDEEWLKTTMARYTPDGPSFHYEDVDVSLIKPRKRDYSK 579 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,652,360,905 Number of extensions: 161881948 Number of successful extensions: 460551 Number of sequences better than 1.0e-05: 3221 Number of HSP's gapped: 443832 Number of HSP's successfully gapped: 3279 Length of query: 580 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 439 Effective length of database: 1,732,333,088 Effective search space: 760494225632 Effective search space used: 760494225632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)