BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0434.0018.p (234 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value P70932.1 P70932_PAEMA Succinate dehydrogenase subunit C 337 4e-91 B3KEI9.1 B3KEI9_9BACI Succinate dehydrogenase (Or fumarate reduc... 310 6e-83 B1DDK9.1 B1DDK9_9BACL Succinate dehydrogenase (Or fumarate reduc... 286 8e-76 A8VX91.1 A8VX91_9BACI Succinate dehydrogenase (Or fumarate reduc... 209 1e-52 B7GH06.1 B7GH06_ANOFW Succinate dehydrogenase, cytochrome b subunit 206 1e-51 >P70932.1 P70932_PAEMA Succinate dehydrogenase subunit C Length = 223 Score = 337 bits (865), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 161/222 (72%), Positives = 193/222 (86%), Gaps = 1/222 (0%) Query: 14 MRGFYSRKIHSLLGVIPLGFFFLEHMLTNFSAVEGGASGFTDSVLWLNSLPLVFFLELFG 73 M+GFYSRK+HSLLGVIPLGFF LEHM+TNFSAVEGG+ GF +SV +LNSLPLV LE+FG Sbjct: 1 MKGFYSRKLHSLLGVIPLGFFILEHMITNFSAVEGGSQGFKESVAFLNSLPLVLVLEIFG 60 Query: 74 IWLPLLYHGVYGLYIAYQSKPNLNRFNLERNWRYTLQRISGVITFIFIVWHLYDTRVQVA 133 IWLPLLYHGVYGLYIA+Q+KPN RF ERN RY LQRISGVI F F++WHL++TRVQVA Sbjct: 61 IWLPLLYHGVYGLYIAFQAKPNNGRFPTERNLRYLLQRISGVIVFAFVIWHLWETRVQVA 120 Query: 134 LGNVKHEELGGVMHNIVTQPLLLMVYIIGVLAACFHFANGLWSFLISWGITVGPRSQRVS 193 LGNV HEELGGVMH+IVTQP+ ++Y+I V+AA FHFANGLWSF++SWGITVGPR+QRVS Sbjct: 121 LGNVTHEELGGVMHSIVTQPVFFLLYLISVVAASFHFANGLWSFMVSWGITVGPRAQRVS 180 Query: 194 SVICLGLFVIVSFMFLFSLVTFRDSEFQAAASA-VQSLRSLI 234 S IC+GLFVIV+ MF+ SL FR +EFQA +A ++S ++L+ Sbjct: 181 SYICMGLFVIVALMFVGSLFAFRGAEFQAEGTALLESAKALL 222 >B3KEI9.1 B3KEI9_9BACI Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family Length = 222 Score = 310 bits (794), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 134/221 (60%), Positives = 184/221 (83%) Query: 14 MRGFYSRKIHSLLGVIPLGFFFLEHMLTNFSAVEGGASGFTDSVLWLNSLPLVFFLELFG 73 M+G+YSRK+HSLLGVIPLG F L HM++NF A EGG GF +V +LNS+PL+FFLELF Sbjct: 1 MKGYYSRKLHSLLGVIPLGAFLLSHMISNFKAFEGGKEGFASAVHFLNSMPLIFFLELFL 60 Query: 74 IWLPLLYHGVYGLYIAYQSKPNLNRFNLERNWRYTLQRISGVITFIFIVWHLYDTRVQVA 133 IWLPLLYHGVYGLYIAYQ+ N+ +N ERN R+T+QRI+GVITF+F++WH+YDTR Q+ Sbjct: 61 IWLPLLYHGVYGLYIAYQANNNVGNYNYERNIRFTIQRITGVITFVFVIWHMYDTRFQIM 120 Query: 134 LGNVKHEELGGVMHNIVTQPLLLMVYIIGVLAACFHFANGLWSFLISWGITVGPRSQRVS 193 +G + H++LG MH I+ P+L ++Y+IGV++A FHFANGLW+FL+SWGITVGPR+Q+VS Sbjct: 121 IGKITHDDLGATMHGIMNNPVLFILYVIGVVSATFHFANGLWAFLVSWGITVGPRAQKVS 180 Query: 194 SVICLGLFVIVSFMFLFSLVTFRDSEFQAAASAVQSLRSLI 234 + IC+GLFV++S +F+ ++ FR SEFQAA +A+ +++++ Sbjct: 181 TYICMGLFVLMSVLFVLAMTAFRGSEFQAATAAIDVVKTVL 221 >B1DDK9.1 B1DDK9_9BACL Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family Length = 223 Score = 286 bits (733), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 137/222 (61%), Positives = 175/222 (78%), Gaps = 2/222 (0%) Query: 14 MRG--FYSRKIHSLLGVIPLGFFFLEHMLTNFSAVEGGASGFTDSVLWLNSLPLVFFLEL 71 M+G +Y RK+HSLLGVIPLG F + H L NF A E G GFT +V ++N LP+V LE+ Sbjct: 1 MKGNSYYWRKLHSLLGVIPLGGFIIVHALANFQAYERGPEGFTRAVNFINGLPIVTLLEI 60 Query: 72 FGIWLPLLYHGVYGLYIAYQSKPNLNRFNLERNWRYTLQRISGVITFIFIVWHLYDTRVQ 131 FGI+LP+L+HGVYGLY+AYQS N RF ERNW +TLQRI+GVITFIFI+WH+++TRVQ Sbjct: 61 FGIYLPILFHGVYGLYMAYQSNLNSGRFKYERNWAFTLQRITGVITFIFIIWHVFETRVQ 120 Query: 132 VALGNVKHEELGGVMHNIVTQPLLLMVYIIGVLAACFHFANGLWSFLISWGITVGPRSQR 191 VALGNV HEELG MHNI T P L ++Y+IG+LAA FHF+NGLW+FLISWGITV P++QR Sbjct: 121 VALGNVTHEELGSTMHNIATSPALFILYLIGILAAVFHFSNGLWAFLISWGITVSPKAQR 180 Query: 192 VSSVICLGLFVIVSFMFLFSLVTFRDSEFQAAASAVQSLRSL 233 VS+ IC+ +FV+V+ +F+ SLV F EF+ ASA +L ++ Sbjct: 181 VSANICMVIFVLVAALFILSLVAFMGDEFKETASAALALTNI 222 >A8VX91.1 A8VX91_9BACI Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family Length = 204 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 99/201 (49%), Positives = 148/201 (73%), Gaps = 4/201 (1%) Query: 15 RGFYSRKIHSLLGVIPLGFFFLEHMLTNFSAVEGGASGFTDSVLWLNSLPLVFFLELFGI 74 R F+ RK+HSLLGVIP+G F + H+ N+ AV+G + +V ++ SLP V+ LE+F I Sbjct: 6 REFFYRKLHSLLGVIPVGAFLIVHLTVNYYAVQG-EEAYNQAVAFMESLPFVYVLEIFLI 64 Query: 75 WLPLLYHGVYGLYIAYQSKPNLNRFNLERNWRYTLQRISGVITFIFIVWHLYDTRVQVAL 134 +LPLL+H +YG+YI +Q+K N + ++ RNW + LQR+SGVI FIF+VWH++DTR+Q Sbjct: 65 FLPLLFHAIYGMYIVFQAKNNTSTYSYFRNWMFMLQRVSGVIVFIFVVWHVWDTRIQKMF 124 Query: 135 GNVKHEELGGVMHNIVTQPLLLMVYIIGVLAACFHFANGLWSFLISWGITVGPRSQRVSS 194 G + ++ M +IV P+ L+ YIIG+ AA FHFANG+W+FLI+WGITV PRSQ++S Sbjct: 125 GAEVNFDM---MVDIVQNPIALVGYIIGITAATFHFANGIWAFLITWGITVSPRSQKISQ 181 Query: 195 VICLGLFVIVSFMFLFSLVTF 215 I +G+FVI++F+ + +++ F Sbjct: 182 YITMGIFVILTFVGIRAILAF 202 >B7GH06.1 B7GH06_ANOFW Succinate dehydrogenase, cytochrome b subunit Length = 202 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 145/201 (72%), Gaps = 4/201 (1%) Query: 15 RGFYSRKIHSLLGVIPLGFFFLEHMLTNFSAVEGGASGFTDSVLWLNSLPLVFFLELFGI 74 R F+ R++HSLLGVIP+G F +H++ N A G A F + ++ LP +FLE+F I Sbjct: 5 REFFYRRLHSLLGVIPVGLFLTQHLVVNHFATRG-ADAFNKAAAFMEQLPFRYFLEIFVI 63 Query: 75 WLPLLYHGVYGLYIAYQSKPNLNRFNLERNWRYTLQRISGVITFIFIVWHLYDTRVQVAL 134 +LPLL+H +YGLYIA+ ++ N++R+ RNW + LQR++G+IT IF+VWH+++TRVQ A Sbjct: 64 FLPLLFHAIYGLYIAFTAQNNVSRYGYFRNWMFMLQRLTGIITLIFVVWHVWETRVQAAF 123 Query: 135 GNVKHEELGGVMHNIVTQPLLLMVYIIGVLAACFHFANGLWSFLISWGITVGPRSQRVSS 194 G + ++ M NIV P +L YI+G+++A FHFANGLWSF +SWGITV PRSQ++S+ Sbjct: 124 GAEVNYDM---MANIVANPFMLAFYIVGIVSAVFHFANGLWSFFVSWGITVTPRSQQIST 180 Query: 195 VICLGLFVIVSFMFLFSLVTF 215 + +G+FV +S + + +++ F Sbjct: 181 YVTMGIFVALSIVGIRAILAF 201 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.145 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,403,464,459 Number of extensions: 58889869 Number of successful extensions: 169124 Number of sequences better than 1.0e-05: 146 Number of HSP's gapped: 168877 Number of HSP's successfully gapped: 147 Length of query: 234 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 103 Effective length of database: 1,826,543,238 Effective search space: 188133953514 Effective search space used: 188133953514 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 129 (54.3 bits)