BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0434.0016.p (222 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEJ1.1 B3KEJ1_9BACI TrkA-N domain protein 340 5e-92 B1DDL2.1 B1DDL2_9BACL TrkA-N domain protein 311 2e-83 B1BEB9.1 B1BEB9_CLOBO Trk system potassium uptake protein TrkA 241 3e-62 B8CXA0.1 B8CXA0_HALOH TrkA-N domain protein 241 4e-62 A0PZN6.1 A0PZN6_CLONN Trk system potassium uptake protein trkA 240 8e-62 >B3KEJ1.1 B3KEJ1_9BACI TrkA-N domain protein Length = 224 Score = 340 bits (872), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 164/221 (74%), Positives = 193/221 (87%) Query: 1 MKAQQFVIIGLGRFGSSLALELMAMGYEVLGIDHVEERVEEMSGQLTHTVMADATDEGIM 60 MK +QF IIGLGRFG+SLALELM GYEVLGID EE VE+MS LTHTV+ADATDE ++ Sbjct: 1 MKPKQFAIIGLGRFGASLALELMEQGYEVLGIDRNEEVVEDMSELLTHTVVADATDEEVL 60 Query: 61 RSLGVRNFDCGIVAIGDNMERSILAAILLKELGVKQVVAKAISILHGRALSKLGVDRVIF 120 +SLG+RNFDCGIVAIG++++ SIL+AILLKELGV VVAKAIS+LHGRAL KLGVDRVIF Sbjct: 61 KSLGIRNFDCGIVAIGNDIQMSILSAILLKELGVAMVVAKAISVLHGRALEKLGVDRVIF 120 Query: 121 PERDMGVRVAHQLTTPNLLDYIELSKDYKVVELTVPACMDGKSLSELNTRAKYGCSIIAL 180 PERDMG+RVAHQL TPNLLDYIELSKDY +VE+TV CMDGK+LSELNTR +YG S++AL Sbjct: 121 PERDMGIRVAHQLVTPNLLDYIELSKDYLIVEMTVTDCMDGKTLSELNTRVRYGVSVVAL 180 Query: 181 NREDGVIVAPTAHDHVHQGDIMVVIGSNESIVEFEDEAVNV 221 N++ G+IVAPTA D V+ GDIMVVIGSN+++ FE E VN+ Sbjct: 181 NKQSGIIVAPTAMDVVNSGDIMVVIGSNDNVDRFESEVVNM 221 >B1DDL2.1 B1DDL2_9BACL TrkA-N domain protein Length = 220 Score = 311 bits (798), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 145/216 (67%), Positives = 182/216 (84%) Query: 1 MKAQQFVIIGLGRFGSSLALELMAMGYEVLGIDHVEERVEEMSGQLTHTVMADATDEGIM 60 MK QFVI+GLGRFGSSL EL+ +GYEVLGID EE V+EMS LT+TV AD TDE + Sbjct: 1 MKNNQFVIVGLGRFGSSLGRELIKLGYEVLGIDRDEEAVQEMSNVLTYTVSADCTDEETL 60 Query: 61 RSLGVRNFDCGIVAIGDNMERSILAAILLKELGVKQVVAKAISILHGRALSKLGVDRVIF 120 RSLGVRNFDCG+VAIGD+++ SIL ILLK+LGVK+VVAKA+S LHGR L K+GVDRVI+ Sbjct: 61 RSLGVRNFDCGVVAIGDDIQASILTTILLKDLGVKRVVAKAMSELHGRVLEKIGVDRVIY 120 Query: 121 PERDMGVRVAHQLTTPNLLDYIELSKDYKVVELTVPACMDGKSLSELNTRAKYGCSIIAL 180 PERDMG+RVAHQL +PNLLDYIELSK+Y + EL+VP C++GKSL ++N RA++GCSI+A+ Sbjct: 121 PERDMGIRVAHQLVSPNLLDYIELSKEYTIAELSVPKCLNGKSLQDMNLRARFGCSIVAI 180 Query: 181 NREDGVIVAPTAHDHVHQGDIMVVIGSNESIVEFED 216 N+ G+I+APTA D V + D+MVVIG+N+ I +FE+ Sbjct: 181 NKPSGIIIAPTATDVVTEKDVMVVIGTNDQIEQFEE 216 >B1BEB9.1 B1BEB9_CLOBO Trk system potassium uptake protein TrkA Length = 220 Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 114/217 (52%), Positives = 161/217 (74%) Query: 1 MKAQQFVIIGLGRFGSSLALELMAMGYEVLGIDHVEERVEEMSGQLTHTVMADATDEGIM 60 MK +QFV+IGLGRFGSS+A L ++G +VL ID EE V+ ++ +TH V ADATDE + Sbjct: 1 MKKRQFVVIGLGRFGSSIAKTLYSLGNDVLAIDLNEETVQNIADSVTHAVQADATDENSL 60 Query: 61 RSLGVRNFDCGIVAIGDNMERSILAAILLKELGVKQVVAKAISILHGRALSKLGVDRVIF 120 R+LG+ NFD G+V IG N++ SI+ A+L KELGV+ ++AKA + LH + L K+GVDRVIF Sbjct: 61 RTLGISNFDVGVVTIGSNVQGSIMTALLAKELGVRCIIAKAHNELHAKVLKKIGVDRVIF 120 Query: 121 PERDMGVRVAHQLTTPNLLDYIELSKDYKVVELTVPACMDGKSLSELNTRAKYGCSIIAL 180 PERDMGVRVAH L + N+LDYIELS+DY + E++ P GK+L EL+ R++YG +++AL Sbjct: 121 PERDMGVRVAHNLVSSNILDYIELSQDYSIAEISSPKEWHGKTLKELDMRSQYGINVMAL 180 Query: 181 NREDGVIVAPTAHDHVHQGDIMVVIGSNESIVEFEDE 217 R + V ++P+A D + GDI+V IG E + + E++ Sbjct: 181 KRNNEVNISPSADDIIRTGDIIVAIGGIEELNKLENK 217 >B8CXA0.1 B8CXA0_HALOH TrkA-N domain protein Length = 215 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 109/208 (52%), Positives = 158/208 (75%) Query: 4 QQFVIIGLGRFGSSLALELMAMGYEVLGIDHVEERVEEMSGQLTHTVMADATDEGIMRSL 63 +QFV++GLGRFGSS+A L GY VL ID+ EERV+E+S ++TH V ADATDE +R+L Sbjct: 2 KQFVVVGLGRFGSSVARTLAESGYNVLAIDNDEERVQELSNEVTHAVEADATDEEALRTL 61 Query: 64 GVRNFDCGIVAIGDNMERSILAAILLKELGVKQVVAKAISILHGRALSKLGVDRVIFPER 123 GVRNFD +V+IGDN+ +IL+ ++LKELGV VV KA LHG+ L+K+G DR+++PER Sbjct: 62 GVRNFDVAVVSIGDNVHANILSTLILKELGVPYVVTKAKDSLHGKILTKVGADRIVYPER 121 Query: 124 DMGVRVAHQLTTPNLLDYIELSKDYKVVELTVPACMDGKSLSELNTRAKYGCSIIALNRE 183 DMGVR+AH LT+ N+LDY+E + DY +VE+ M GKSL++L R+KYG +++A+ R Sbjct: 122 DMGVRIAHNLTSSNVLDYLEFAPDYSIVEIIASPEMVGKSLAQLELRSKYGVNVMAIKRG 181 Query: 184 DGVIVAPTAHDHVHQGDIMVVIGSNESI 211 + + P A+D + +GD+++V+G NE++ Sbjct: 182 KNLNITPGANDKILEGDVLIVMGKNENL 209 >A0PZN6.1 A0PZN6_CLONN Trk system potassium uptake protein trkA Length = 223 Score = 240 bits (612), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 113/217 (52%), Positives = 160/217 (73%) Query: 1 MKAQQFVIIGLGRFGSSLALELMAMGYEVLGIDHVEERVEEMSGQLTHTVMADATDEGIM 60 +K +QFV+IGLGRFGSS+A L ++G +VL ID EE V+ ++ +TH V AD+TDE + Sbjct: 4 LKKRQFVVIGLGRFGSSIAKTLYSLGNDVLAIDLNEETVQNIADSVTHAVQADSTDENSL 63 Query: 61 RSLGVRNFDCGIVAIGDNMERSILAAILLKELGVKQVVAKAISILHGRALSKLGVDRVIF 120 R+LG+ NFD G+V IG N++ SI+ A+L KELGVK ++AKA + LH + L K+GVDRVIF Sbjct: 64 RTLGISNFDVGVVTIGSNVQGSIMTALLTKELGVKCIIAKAHNELHAKVLKKIGVDRVIF 123 Query: 121 PERDMGVRVAHQLTTPNLLDYIELSKDYKVVELTVPACMDGKSLSELNTRAKYGCSIIAL 180 PERDMGVRVAH L + N+LDYIELS+DY + E++ P GK+L EL+ R++YG +++AL Sbjct: 124 PERDMGVRVAHNLVSSNILDYIELSQDYSIAEISSPKEWHGKTLKELDMRSQYGINVMAL 183 Query: 181 NREDGVIVAPTAHDHVHQGDIMVVIGSNESIVEFEDE 217 R + V ++P+A D + GDI+V IG E + E++ Sbjct: 184 KRNNEVNISPSADDIIRTGDIIVAIGGIEELNRLENK 220 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,209,259,718 Number of extensions: 46064408 Number of successful extensions: 157051 Number of sequences better than 1.0e-05: 1121 Number of HSP's gapped: 157155 Number of HSP's successfully gapped: 1128 Length of query: 222 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 91 Effective length of database: 1,826,543,238 Effective search space: 166215434658 Effective search space used: 166215434658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)