BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0434.0012.p
         (149 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFC6.1 B3KFC6_9BACI Regulatory protein MerR                         268   1e-70
B1C5W7.1 B1C5W7_9FIRM Putative uncharacterized protein                146   6e-34
B2UN17.1 B2UN17_AKKM8 Transcriptional regulator, MerR family          121   2e-26
Q5DU77.1 Q5DU77_LISIV MerR family transcription regulator             120   4e-26
A6PLL5.1 A6PLL5_9BACT Putative transcriptional regulator, MerR f...   118   1e-25

>B3KFC6.1 B3KFC6_9BACI Regulatory protein MerR
          Length = 147

 Score =  268 bits (685), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/145 (86%), Positives = 134/145 (92%)

Query: 1   MHTVKEAALITGLTEHAVRFYTDKGLVPSVQRNENNIRLFDEESINWLHGVKCLKQSGMP 60
           M+TVKEAA ITGLTEHAVRFYTDK LVPSVQRNENNIRLFDEESINWLHG+KCLKQSGMP
Sbjct: 1   MYTVKEAAQITGLTEHAVRFYTDKALVPSVQRNENNIRLFDEESINWLHGIKCLKQSGMP 60

Query: 61  IEVIKKYVDLCLEGDSTIPQRSALMMEHKEAALVKLEEAKRHVAHLEQKTALYQAILEHR 120
           I+VIK Y+DLCLEGDSTIPQR  LMMEHKEAAL KLEEAK+HVAHLE+KTALYQAILE+R
Sbjct: 61  IDVIKMYIDLCLEGDSTIPQRYRLMMEHKEAALAKLEEAKQHVAHLEEKTALYQAILENR 120

Query: 121 SPDTANPVNWDKIQHMHADVFYSPS 145
           SPDT NP +W +IQHMH DVFYS S
Sbjct: 121 SPDTMNPAHWGRIQHMHGDVFYSSS 145


>B1C5W7.1 B1C5W7_9FIRM Putative uncharacterized protein
          Length = 140

 Score =  146 bits (368), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 92/127 (72%)

Query: 1   MHTVKEAALITGLTEHAVRFYTDKGLVPSVQRNENNIRLFDEESINWLHGVKCLKQSGMP 60
           M+TVK+ +    L+EH +R+YTD+ L+P+V+RN+NN+RLFDEES+NW  G+KCLK+ GM 
Sbjct: 1   MYTVKDISKKLNLSEHTIRYYTDRDLIPNVKRNKNNVRLFDEESVNWFIGIKCLKECGMS 60

Query: 61  IEVIKKYVDLCLEGDSTIPQRSALMMEHKEAALVKLEEAKRHVAHLEQKTALYQAILEHR 120
           IE IK Y+DLCLEGD+TI +R  ++++ +E A  +LEEAK  + +LE K   Y+ I+   
Sbjct: 61  IEDIKNYIDLCLEGDNTIHERFDIILKQREIAEKQLEEAKERLIYLENKVKHYEDIINGD 120

Query: 121 SPDTANP 127
             D  NP
Sbjct: 121 LTDNTNP 127


>B2UN17.1 B2UN17_AKKM8 Transcriptional regulator, MerR family
          Length = 161

 Score =  121 bits (303), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 87/129 (67%)

Query: 2   HTVKEAALITGLTEHAVRFYTDKGLVPSVQRNENNIRLFDEESINWLHGVKCLKQSGMPI 61
           +TVK+ A +  ++ + +R+Y + GL+P V R+  N R+F + ++ WL  V CL+ +G+PI
Sbjct: 21  YTVKQVAEMMEMSAYTIRYYENAGLIPDVDRSGGNARMFSDYTLGWLRLVHCLRMTGLPI 80

Query: 62  EVIKKYVDLCLEGDSTIPQRSALMMEHKEAALVKLEEAKRHVAHLEQKTALYQAILEHRS 121
           E +K Y+DLC EGDSTIP+R+ L+ + +++   +L   K+ +  L+ K   YQ +L++R 
Sbjct: 81  EGVKHYIDLCQEGDSTIPERAELIFKQEKSLREQLRILKKQMEVLKYKKKFYQDLLDNRR 140

Query: 122 PDTANPVNW 130
           PD+ NP+N+
Sbjct: 141 PDSCNPLNY 149


>Q5DU77.1 Q5DU77_LISIV MerR family transcription regulator
          Length = 138

 Score =  120 bits (301), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 85/130 (65%)

Query: 2   HTVKEAALITGLTEHAVRFYTDKGLVPSVQRNENNIRLFDEESINWLHGVKCLKQSGMPI 61
           +T+KE A I  ++ H +RFY D GL P V R++NN+R F E+ + W++ V+CL+ +G+PI
Sbjct: 3   YTIKEVATIMNISAHTLRFYDDHGLFPFVHRDKNNVRQFSEKDLEWVYVVQCLRTTGLPI 62

Query: 62  EVIKKYVDLCLEGDSTIPQRSALMMEHKEAALVKLEEAKRHVAHLEQKTALYQAILEHRS 121
           E +K Y+++C+EGD+T  +R  LM++ +E    +L++ ++ +  L+ KT  Y  IL +  
Sbjct: 63  EQVKHYINMCVEGDATTEERYNLMLQQREVMRAELQKIEKQLKMLDYKTQYYHNILFNEK 122

Query: 122 PDTANPVNWD 131
            D  NP  +D
Sbjct: 123 KDLHNPFIFD 132


>A6PLL5.1 A6PLL5_9BACT Putative transcriptional regulator, MerR family
          Length = 158

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 85/131 (64%)

Query: 2   HTVKEAALITGLTEHAVRFYTDKGLVPSVQRNENNIRLFDEESINWLHGVKCLKQSGMPI 61
           +TVKE + +TGL+ + +R+Y + GL+PSV R   NIR+F E +++WL  V CL+ +G+PI
Sbjct: 17  YTVKEVSELTGLSAYTIRYYENSGLIPSVDRTGGNIRMFSEYALSWLRLVHCLRATGLPI 76

Query: 62  EVIKKYVDLCLEGDSTIPQRSALMMEHKEAALVKLEEAKRHVAHLEQKTALYQAILEHRS 121
           + ++ Y+ +C +GDSTIP+R+ ++   +E+   +LE  ++    L+ K   Y+ +LE R 
Sbjct: 77  DQVRHYIRMCEQGDSTIPERAEMIFRQEESLRRQLESLQQQFEVLKYKKEYYKRLLEGRG 136

Query: 122 PDTANPVNWDK 132
            D+ NP    K
Sbjct: 137 QDSCNPAARQK 147


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 883,847,876
Number of extensions: 32597193
Number of successful extensions: 92132
Number of sequences better than 1.0e-05: 701
Number of HSP's gapped: 92420
Number of HSP's successfully gapped: 701
Length of query: 149
Length of database: 3,060,696,203
Length adjustment: 111
Effective length of query: 38
Effective length of database: 2,014,963,538
Effective search space: 76568614444
Effective search space used: 76568614444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)