BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0434.0010.p (337 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEJ4.1 B3KEJ4_9BACI Excinuclease ABC, C subunit 461 e-128 B1DDL8.1 B1DDL8_9BACL Excinuclease ABC, C subunit 419 e-115 C0Z9I7.1 UVRC_BREBN UvrABC system protein C 386 e-105 C3FR79.1 C3FR79_BACTB UvrABC system protein C 371 e-101 C3D7U4.1 C3D7U4_BACTU UvrABC system protein C 371 e-101 >B3KEJ4.1 B3KEJ4_9BACI Excinuclease ABC, C subunit Length = 667 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 222/275 (80%), Positives = 247/275 (89%) Query: 59 LQEWLGVKVLVPQRGLKKQMVGMACQNGRVALDEKFRLIERDEERTSGAAIXXXXXXXXX 118 LQEWLGVKV VPQRGLKKQMVGMA N +V+LDEKFRLIERDEERTS AA Sbjct: 391 LQEWLGVKVHVPQRGLKKQMVGMASDNAKVSLDEKFRLIERDEERTSVAAANLGEVIGLQ 450 Query: 119 XXXRIEAFDNSNIQGTNPVSAMVVFIDGKPARKEYRKYKVRSVQGPDDYETMREVIRRRY 178 RIEAFDNSNIQG+NPVSAMVVF +GKP +KEYRKYK+R+VQGPDDY+TMREVIRRRY Sbjct: 451 SLNRIEAFDNSNIQGSNPVSAMVVFTNGKPDKKEYRKYKIRTVQGPDDYDTMREVIRRRY 510 Query: 179 ERVLKENLPQPDLIVVDGGKGQISSAIDILQNELGLYIPVCGLVKDDKHRTAQLLVGDSA 238 ERVLKENLP PDLIVVDGGKGQIS+AID+L+NELGL++PVCGLVKD KH+TAQL+VGD Sbjct: 511 ERVLKENLPLPDLIVVDGGKGQISAAIDVLENELGLFVPVCGLVKDAKHKTAQLMVGDPP 570 Query: 239 EPVQLARDSQEFYLLQRIQDEVHRFAITFHREQRGKSMVTSKLDSIPGIGDKRRKLLLKH 298 EPV L RDSQEFYLLQRIQDEVHRFAI+FHREQRGKSMVTSKLDSIPGIG+KRRK+LLKH Sbjct: 571 EPVSLPRDSQEFYLLQRIQDEVHRFAISFHREQRGKSMVTSKLDSIPGIGEKRRKMLLKH 630 Query: 299 FGSLKKIKEASIEDFRPLSIGDKLAGQILDALKDE 333 FGS+KKIKEAS+EDF+PLSIG+KLA IL+AL++E Sbjct: 631 FGSVKKIKEASVEDFKPLSIGEKLATDILNALREE 665 >B1DDL8.1 B1DDL8_9BACL Excinuclease ABC, C subunit Length = 626 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 207/275 (75%), Positives = 230/275 (83%) Query: 59 LQEWLGVKVLVPQRGLKKQMVGMACQNGRVALDEKFRLIERDEERTSGAAIXXXXXXXXX 118 L WL VKVL+PQRG K + V MA N ++AL +KFRLIERDEER+ A+ Sbjct: 345 LHNWLKVKVLMPQRGRKSEAVSMAIDNAKIALADKFRLIERDEERSVRASEGLAEWLGLP 404 Query: 119 XXXRIEAFDNSNIQGTNPVSAMVVFIDGKPARKEYRKYKVRSVQGPDDYETMREVIRRRY 178 RIEAFDNSNIQGTNPVSAMVVF DGKP RKEYRKYKV++V G DDYETMREVIRRRY Sbjct: 405 EVRRIEAFDNSNIQGTNPVSAMVVFTDGKPDRKEYRKYKVKTVVGADDYETMREVIRRRY 464 Query: 179 ERVLKENLPQPDLIVVDGGKGQISSAIDILQNELGLYIPVCGLVKDDKHRTAQLLVGDSA 238 ER+LKE PDLIVVDGGKGQIS+A+DILQNELGLYIPVCGLVKD KH+TAQL+ GD Sbjct: 465 ERMLKEQQTPPDLIVVDGGKGQISAALDILQNELGLYIPVCGLVKDAKHKTAQLMTGDPP 524 Query: 239 EPVQLARDSQEFYLLQRIQDEVHRFAITFHREQRGKSMVTSKLDSIPGIGDKRRKLLLKH 298 E V L RDSQEFYLLQRIQDEVHRFAI+FHREQRGKSM+ S+LD+IPGIG+KRRKLLLKH Sbjct: 525 EVVPLPRDSQEFYLLQRIQDEVHRFAISFHREQRGKSMIASQLDAIPGIGEKRRKLLLKH 584 Query: 299 FGSLKKIKEASIEDFRPLSIGDKLAGQILDALKDE 333 FGS+KKIKEASIEDF+PLSIG+KLA QIL AL +E Sbjct: 585 FGSIKKIKEASIEDFKPLSIGEKLASQILAALNEE 619 >C0Z9I7.1 UVRC_BREBN UvrABC system protein C Length = 593 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 180/273 (65%), Positives = 220/273 (80%) Query: 59 LQEWLGVKVLVPQRGLKKQMVGMACQNGRVALDEKFRLIERDEERTSGAAIXXXXXXXXX 118 L EWLG+KV P+RG K ++V MA +N R+AL EKF L+ +D+ RT A Sbjct: 317 LAEWLGIKVHAPKRGKKHELVKMATENARIALQEKFALMSKDDARTVQAVHNLGHILGIP 376 Query: 119 XXXRIEAFDNSNIQGTNPVSAMVVFIDGKPARKEYRKYKVRSVQGPDDYETMREVIRRRY 178 RIEAFDNSNIQGT PVSAM+VF DG+P +KEYRK+K+++V+GPDDY +MREV+RRRY Sbjct: 377 VPHRIEAFDNSNIQGTEPVSAMIVFTDGRPDKKEYRKFKIKTVEGPDDYGSMREVVRRRY 436 Query: 179 ERVLKENLPQPDLIVVDGGKGQISSAIDILQNELGLYIPVCGLVKDDKHRTAQLLVGDSA 238 R+LKEN P PDLIV+DGGKGQIS+A+D+L+NELGLYIPVCGL KD+KHRTAQL+ GD Sbjct: 437 SRLLKENQPMPDLIVIDGGKGQISAAMDVLENELGLYIPVCGLAKDEKHRTAQLMYGDPP 496 Query: 239 EPVQLARDSQEFYLLQRIQDEVHRFAITFHREQRGKSMVTSKLDSIPGIGDKRRKLLLKH 298 EPV L RDS EFYLLQRIQDEVHRF ITFHR+ R K+M++S+LD IPGIG+KRRKLL H Sbjct: 497 EPVNLRRDSYEFYLLQRIQDEVHRFVITFHRQSRTKTMLSSQLDEIPGIGEKRRKLLFSH 556 Query: 299 FGSLKKIKEASIEDFRPLSIGDKLAGQILDALK 331 FGSLKK++EA++EDFR L IGDKLA +I+ L+ Sbjct: 557 FGSLKKMREATVEDFRQLGIGDKLAKEIIGHLR 589 >C3FR79.1 C3FR79_BACTB UvrABC system protein C Length = 594 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 178/275 (64%), Positives = 218/275 (79%) Query: 59 LQEWLGVKVLVPQRGLKKQMVGMACQNGRVALDEKFRLIERDEERTSGAAIXXXXXXXXX 118 ++ +L V+ P+RG KK +V +A +N ++AL+EKF LIERDEERT A Sbjct: 317 VERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERDEERTIKAVDHLGKQLGIE 376 Query: 119 XXXRIEAFDNSNIQGTNPVSAMVVFIDGKPARKEYRKYKVRSVQGPDDYETMREVIRRRY 178 RIEAFDNSNIQGTNPVSAM+ FIDGKPA+KEYRKYK+++VQGPDDYE+MREV+RRRY Sbjct: 377 TPYRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIKTVQGPDDYESMREVVRRRY 436 Query: 179 ERVLKENLPQPDLIVVDGGKGQISSAIDILQNELGLYIPVCGLVKDDKHRTAQLLVGDSA 238 R LKENLP PDLI++DGGKG +++A DIL+NELGLYIP+ GLVKDDKH+T+ L++GD Sbjct: 437 TRALKENLPLPDLIIIDGGKGHLAAASDILENELGLYIPMAGLVKDDKHKTSHLIIGDPP 496 Query: 239 EPVQLARDSQEFYLLQRIQDEVHRFAITFHREQRGKSMVTSKLDSIPGIGDKRRKLLLKH 298 EPV L R+SQEFYLLQRIQDEVHRFAITFHR+ GKS++ S LD IPGIGDKR+K+LLKH Sbjct: 497 EPVMLERNSQEFYLLQRIQDEVHRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKH 556 Query: 299 FGSLKKIKEASIEDFRPLSIGDKLAGQILDALKDE 333 FGSLKK+KEASIE+F + +A I L D+ Sbjct: 557 FGSLKKMKEASIEEFVEAGMPKNVAETIYTYLTDK 591 >C3D7U4.1 C3D7U4_BACTU UvrABC system protein C Length = 594 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 178/275 (64%), Positives = 218/275 (79%) Query: 59 LQEWLGVKVLVPQRGLKKQMVGMACQNGRVALDEKFRLIERDEERTSGAAIXXXXXXXXX 118 ++ +L V+ P+RG KK +V +A +N ++AL+EKF LIERDEERT A Sbjct: 317 VERFLEVEATQPKRGKKKDLVELANKNAKIALEEKFYLIERDEERTIKAVDHLGKQLGIE 376 Query: 119 XXXRIEAFDNSNIQGTNPVSAMVVFIDGKPARKEYRKYKVRSVQGPDDYETMREVIRRRY 178 RIEAFDNSNIQGTNPVSAM+ FIDGKPA+KEYRKYK+++VQGPDDYE+MREV+RRRY Sbjct: 377 TPYRIEAFDNSNIQGTNPVSAMIAFIDGKPAKKEYRKYKIKTVQGPDDYESMREVVRRRY 436 Query: 179 ERVLKENLPQPDLIVVDGGKGQISSAIDILQNELGLYIPVCGLVKDDKHRTAQLLVGDSA 238 R LKENLP PDLI++DGGKG +++A DIL+NELGLYIP+ GLVKDDKH+T+ L++GD Sbjct: 437 TRALKENLPLPDLIIIDGGKGHLAAASDILENELGLYIPMAGLVKDDKHKTSHLIIGDPP 496 Query: 239 EPVQLARDSQEFYLLQRIQDEVHRFAITFHREQRGKSMVTSKLDSIPGIGDKRRKLLLKH 298 EPV L R+SQEFYLLQRIQDEVHRFAITFHR+ GKS++ S LD IPGIGDKR+K+LLKH Sbjct: 497 EPVMLERNSQEFYLLQRIQDEVHRFAITFHRQLHGKSVIQSALDDIPGIGDKRKKVLLKH 556 Query: 299 FGSLKKIKEASIEDFRPLSIGDKLAGQILDALKDE 333 FGSLKK+KEASIE+F + +A I L D+ Sbjct: 557 FGSLKKMKEASIEEFVEAGMPKNVAETIYTYLTDK 591 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,658,418,863 Number of extensions: 61503324 Number of successful extensions: 160215 Number of sequences better than 1.0e-05: 1514 Number of HSP's gapped: 157041 Number of HSP's successfully gapped: 1582 Length of query: 337 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 201 Effective length of database: 1,779,438,163 Effective search space: 357667070763 Effective search space used: 357667070763 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)