BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0434.0009.p (315 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEJ4.1 B3KEJ4_9BACI Excinuclease ABC, C subunit 558 e-157 B1DDL8.1 B1DDL8_9BACL Excinuclease ABC, C subunit 497 e-139 C1PAD1.1 C1PAD1_BACCO Excinuclease ABC, C subunit 439 e-121 A6CSE6.1 A6CSE6_9BACI Excinuclease ABC subunit C 438 e-121 C3HPH3.1 C3HPH3_BACTU UvrABC system protein C 436 e-120 >B3KEJ4.1 B3KEJ4_9BACI Excinuclease ABC, C subunit Length = 667 Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust. Identities = 257/299 (85%), Positives = 277/299 (92%) Query: 5 DNIRNKLALLPDLPGCYLMKNEEGTIIYVGKAKVLKNRVRSYFTGSHNGKTQRLVANITD 64 +NIR+KLALLPD PGCYLMKN EGTIIYVGKAKVLKNRVRSYFTGSHNGKTQ LV+ I D Sbjct: 16 ENIRHKLALLPDQPGCYLMKNHEGTIIYVGKAKVLKNRVRSYFTGSHNGKTQMLVSEIRD 75 Query: 65 FEYIVTSSNMEALILECNLIKKHMPRYNVLLKDDKTFPYLKITNEAHPRLEVTRRVIKDK 124 FEYIVT SNMEALILECNLIK H PR+NVLLKDDKT+PYLKITNE HPRLEVTRRV+KDK Sbjct: 76 FEYIVTGSNMEALILECNLIKTHQPRFNVLLKDDKTYPYLKITNEEHPRLEVTRRVLKDK 135 Query: 125 AKYFGPYPNAYAAHQTKKLLDRMYPLRKCGVMPKEVCLYYHMGQCLAPCEKEVPKSDYEE 184 AKYFGPYPNAYAA QTKKLLDRMYPLRKCGVMPKEVCLYYHMGQCLAPC KEVPKS YE+ Sbjct: 136 AKYFGPYPNAYAAQQTKKLLDRMYPLRKCGVMPKEVCLYYHMGQCLAPCVKEVPKSAYEQ 195 Query: 185 ITQNIAGFLGGGHEAVKKDLQQKMQEAAEELYFERAKELRDQIIHIDALMEKQKINTADT 244 IT I FL GGHE +KK+LQ+KMQEAAE+LYFERAKELRDQIIHID LMEKQKI T DT Sbjct: 196 ITGEITSFLSGGHEEIKKELQRKMQEAAEDLYFERAKELRDQIIHIDTLMEKQKITTTDT 255 Query: 245 KDRDVFGYAVDKGWMCVQILYMRQGKMIQRHSSVFPFYGEAYSDFISYVAQYYSENPAL 303 +DRDVFGYAVDKGWMCVQILYMRQGKM+QR+ SVFPFYG+A+SDF+S++AQYYS+NPAL Sbjct: 256 RDRDVFGYAVDKGWMCVQILYMRQGKMVQRNKSVFPFYGDAHSDFMSFIAQYYSDNPAL 314 >B1DDL8.1 B1DDL8_9BACL Excinuclease ABC, C subunit Length = 626 Score = 497 bits (1279), Expect = e-139, Method: Compositional matrix adjust. Identities = 226/297 (76%), Positives = 259/297 (87%) Query: 7 IRNKLALLPDLPGCYLMKNEEGTIIYVGKAKVLKNRVRSYFTGSHNGKTQRLVANITDFE 66 IRNKLALLPD PGCYLMKN EGTIIYVGKAKVLKNRVRSYF GSHNGKTQRLV+ I DF+ Sbjct: 19 IRNKLALLPDQPGCYLMKNGEGTIIYVGKAKVLKNRVRSYFNGSHNGKTQRLVSEIRDFD 78 Query: 67 YIVTSSNMEALILECNLIKKHMPRYNVLLKDDKTFPYLKITNEAHPRLEVTRRVIKDKAK 126 YI+TSSNMEALILECNLIK++ PRYNVLLKDDKTFPY+KITNE HPRLEVTRRV+KDK K Sbjct: 79 YIITSSNMEALILECNLIKQYHPRYNVLLKDDKTFPYIKITNEKHPRLEVTRRVVKDKGK 138 Query: 127 YFGPYPNAYAAHQTKKLLDRMYPLRKCGVMPKEVCLYYHMGQCLAPCEKEVPKSDYEEIT 186 YFGPYPNA+AA QTKKLLDR+YPLRKCG +P +VCLYYH+GQC+APCE +V + Y+ + Sbjct: 139 YFGPYPNAFAAQQTKKLLDRLYPLRKCGTLPDKVCLYYHIGQCIAPCEYDVEQGQYDAMI 198 Query: 187 QNIAGFLGGGHEAVKKDLQQKMQEAAEELYFERAKELRDQIIHIDALMEKQKINTADTKD 246 Q I FL GGH+AVK ++ +KM+ AAEEL FERAKE RDQII IDA++EKQKI D D Sbjct: 199 QEITKFLNGGHDAVKAEIHRKMEAAAEELNFERAKEYRDQIISIDAVIEKQKITMNDALD 258 Query: 247 RDVFGYAVDKGWMCVQILYMRQGKMIQRHSSVFPFYGEAYSDFISYVAQYYSENPAL 303 RD+FGYAV+KGWMCVQILYMRQGKMI+R + FP+YGE Y DF+++V QYYS+NPAL Sbjct: 259 RDIFGYAVEKGWMCVQILYMRQGKMIERRGTTFPYYGEEYDDFMTFVTQYYSDNPAL 315 >C1PAD1.1 C1PAD1_BACCO Excinuclease ABC, C subunit Length = 590 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 201/294 (68%), Positives = 242/294 (82%) Query: 5 DNIRNKLALLPDLPGCYLMKNEEGTIIYVGKAKVLKNRVRSYFTGSHNGKTQRLVANITD 64 + IRNKLALLP PGCYLMK+ +GTIIYVGKAK+LKNRVRSYF+GSH+ KTQRLV+ I D Sbjct: 3 ETIRNKLALLPAQPGCYLMKDRQGTIIYVGKAKILKNRVRSYFSGSHDAKTQRLVSEIED 62 Query: 65 FEYIVTSSNMEALILECNLIKKHMPRYNVLLKDDKTFPYLKITNEAHPRLEVTRRVIKDK 124 FEYIVTSSN+EALILE NLIKKH P+YN++LKDDKT+PY+K+T+E HPRL TR+V KDK Sbjct: 63 FEYIVTSSNIEALILEINLIKKHDPKYNIMLKDDKTYPYIKLTHERHPRLITTRKVKKDK 122 Query: 125 AKYFGPYPNAYAAHQTKKLLDRMYPLRKCGVMPKEVCLYYHMGQCLAPCEKEVPKSDYEE 184 KYFGPYPN AA++TKKLLDR+YPLRKC MP VCLYYH+GQCLAPC EV + Y+E Sbjct: 123 GKYFGPYPNVQAANETKKLLDRLYPLRKCTNMPDRVCLYYHLGQCLAPCVNEVKEETYKE 182 Query: 185 ITQNIAGFLGGGHEAVKKDLQQKMQEAAEELYFERAKELRDQIIHIDALMEKQKINTADT 244 IT I FL GG+ +KK+L++KM EAAE+L FERAKE RDQI +I+ MEKQKI D Sbjct: 183 ITDQITRFLNGGYTEIKKELEEKMHEAAEKLEFERAKEYRDQIANIEMTMEKQKITMTDF 242 Query: 245 KDRDVFGYAVDKGWMCVQILYMRQGKMIQRHSSVFPFYGEAYSDFISYVAQYYS 298 DRD+FGYAVDKGWMCVQ+ +MRQGK+I+R S+FP Y E +F+SY+ Q+Y+ Sbjct: 243 TDRDIFGYAVDKGWMCVQVFFMRQGKLIERDVSLFPSYDEPEEEFLSYLGQFYA 296 >A6CSE6.1 A6CSE6_9BACI Excinuclease ABC subunit C Length = 590 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 199/294 (67%), Positives = 244/294 (82%) Query: 7 IRNKLALLPDLPGCYLMKNEEGTIIYVGKAKVLKNRVRSYFTGSHNGKTQRLVANITDFE 66 I +KLALLPD PGCYLMK+ +GT+IYVGKAKVLKNRVRSYFTGSH+GKTQRLV I DFE Sbjct: 5 ISHKLALLPDQPGCYLMKDRQGTVIYVGKAKVLKNRVRSYFTGSHDGKTQRLVGEIEDFE 64 Query: 67 YIVTSSNMEALILECNLIKKHMPRYNVLLKDDKTFPYLKITNEAHPRLEVTRRVIKDKAK 126 YIVTSSN+EALILE NLIKKH P+YNV+LKDDK++P++K+T E HPRL +TR V KDK K Sbjct: 65 YIVTSSNLEALILELNLIKKHDPKYNVMLKDDKSYPFIKLTAERHPRLIITRNVKKDKGK 124 Query: 127 YFGPYPNAYAAHQTKKLLDRMYPLRKCGVMPKEVCLYYHMGQCLAPCEKEVPKSDYEEIT 186 YFGPYPNA AA++TKKLLDR+YPLRKC +P VCLYYH+GQCLAPC KEV Y+++T Sbjct: 125 YFGPYPNAGAANETKKLLDRIYPLRKCDNLPDRVCLYYHLGQCLAPCVKEVEPETYKKLT 184 Query: 187 QNIAGFLGGGHEAVKKDLQQKMQEAAEELYFERAKELRDQIIHIDALMEKQKINTADTKD 246 I+ FL GG++ +KK+L +KM EAAE L FERAKE RDQI HI+A MEKQ ++ AD D Sbjct: 185 DEISRFLNGGYKDIKKELNEKMAEAAENLEFERAKEFRDQISHIEATMEKQTMDIADFTD 244 Query: 247 RDVFGYAVDKGWMCVQILYMRQGKMIQRHSSVFPFYGEAYSDFISYVAQYYSEN 300 RD+FGYAVDKGWMCVQ+ ++RQGK+I+R S+FP Y E +F++++ Q+YS+ Sbjct: 245 RDIFGYAVDKGWMCVQVFFIRQGKLIERDVSLFPIYDEPAEEFLTFIGQFYSKT 298 >C3HPH3.1 C3HPH3_BACTU UvrABC system protein C Length = 594 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 199/293 (67%), Positives = 242/293 (82%) Query: 5 DNIRNKLALLPDLPGCYLMKNEEGTIIYVGKAKVLKNRVRSYFTGSHNGKTQRLVANITD 64 ++++ KLA+LPD PGCYLMK+++GT+IYVGKAKVLKNRVRSYFTGSH+GKT RLV I D Sbjct: 3 EHLKEKLAILPDQPGCYLMKDKQGTVIYVGKAKVLKNRVRSYFTGSHDGKTLRLVGEIVD 62 Query: 65 FEYIVTSSNMEALILECNLIKKHMPRYNVLLKDDKTFPYLKITNEAHPRLEVTRRVIKDK 124 FEYIVTSSN+EALILE NLIKKH P+YN+ LKDDKT+P++KIT E PRL +TR V KDK Sbjct: 63 FEYIVTSSNLEALILELNLIKKHDPKYNIQLKDDKTYPFIKITAEKQPRLLITRNVKKDK 122 Query: 125 AKYFGPYPNAYAAHQTKKLLDRMYPLRKCGVMPKEVCLYYHMGQCLAPCEKEVPKSDYEE 184 KYFGPYPNA +AH+TKKLLDRMYPLRKC MP +VCLYYHMGQCLAPC KEV + +E Sbjct: 123 GKYFGPYPNAQSAHETKKLLDRMYPLRKCSNMPDKVCLYYHMGQCLAPCVKEVTEEQNKE 182 Query: 185 ITQNIAGFLGGGHEAVKKDLQQKMQEAAEELYFERAKELRDQIIHIDALMEKQKINTADT 244 I I FL GGH+ V+ +L+ KM EA+E+L FERAKELRDQI HIDA+MEKQK+ +D Sbjct: 183 IVDEIIKFLNGGHKEVRSELETKMYEASEKLEFERAKELRDQIAHIDAIMEKQKMIMSDL 242 Query: 245 KDRDVFGYAVDKGWMCVQILYMRQGKMIQRHSSVFPFYGEAYSDFISYVAQYY 297 DRDVFGYAVDKGWMCVQ+ ++R+GK+I+R S+FP Y E F++++ Q+Y Sbjct: 243 VDRDVFGYAVDKGWMCVQVFFVRKGKLIERDVSMFPIYDEPEEGFLTFIGQFY 295 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,816,607,109 Number of extensions: 72264456 Number of successful extensions: 193351 Number of sequences better than 1.0e-05: 1694 Number of HSP's gapped: 189568 Number of HSP's successfully gapped: 1695 Length of query: 315 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 180 Effective length of database: 1,788,859,178 Effective search space: 321994652040 Effective search space used: 321994652040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)