BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0434.0008.p
         (71 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KEJ5.1 B3KEJ5_9BACI Thioredoxin                                     131   2e-29
C3IXX7.1 C3IXX7_9BACI Thioredoxin                                     100   6e-20
B7Y696.1 B7Y696_9BACI Thioredoxin                                     100   6e-20
Q404E5.1 Q404E5_BRECH Thioredoxin                                      98   2e-19
Q9K8A8.1 Q9K8A8_BACHD Thioredoxin                                      98   3e-19

>B3KEJ5.1 B3KEJ5_9BACI Thioredoxin
          Length = 105

 Score =  131 bits (329), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/71 (85%), Positives = 70/71 (98%)

Query: 1   MLAPILEELSTELGDDVKIAKLNVDENPETASRFGVMSIPTLIFFKDGQPVDKVVGLNSK 60
           MLAPIL+ELS+ELGDDVKIAK+NVDENPE+A+RFGVMSIPT+IFFKDGQPVDKVVGLNSK
Sbjct: 35  MLAPILDELSSELGDDVKIAKVNVDENPESAARFGVMSIPTMIFFKDGQPVDKVVGLNSK 94

Query: 61  DSLKNIVAKHQ 71
           ++LK I+AKHQ
Sbjct: 95  EALKGIIAKHQ 105


>C3IXX7.1 C3IXX7_9BACI Thioredoxin
          Length = 105

 Score = 99.8 bits (247), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 56/70 (80%)

Query: 1   MLAPILEELSTELGDDVKIAKLNVDENPETASRFGVMSIPTLIFFKDGQPVDKVVGLNSK 60
           M+AP+LEEL  E+GD VKI K+NVDEN ETAS+FGVMSIPTL+ FKDGQ VDK VG   K
Sbjct: 34  MIAPVLEELDREMGDKVKIVKVNVDENQETASKFGVMSIPTLLLFKDGQLVDKAVGYQPK 93

Query: 61  DSLKNIVAKH 70
           ++L  +V KH
Sbjct: 94  EALVQLVGKH 103


>B7Y696.1 B7Y696_9BACI Thioredoxin
          Length = 105

 Score = 99.8 bits (247), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 56/70 (80%)

Query: 1   MLAPILEELSTELGDDVKIAKLNVDENPETASRFGVMSIPTLIFFKDGQPVDKVVGLNSK 60
           M+AP+LEEL  E+GD VKI K+NVDEN ETAS+FGVMSIPTL+ FKDGQ VDK VG   K
Sbjct: 34  MIAPVLEELDREMGDKVKIVKVNVDENQETASKFGVMSIPTLLLFKDGQLVDKAVGYQPK 93

Query: 61  DSLKNIVAKH 70
           ++L  +V KH
Sbjct: 94  EALVQLVGKH 103


>Q404E5.1 Q404E5_BRECH Thioredoxin
          Length = 105

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 57/70 (81%)

Query: 1   MLAPILEELSTELGDDVKIAKLNVDENPETASRFGVMSIPTLIFFKDGQPVDKVVGLNSK 60
           M+AP+LE++ +E+G  +KI K+NVD+NP++A RFGVMSIPTLI FKDGQPVDKV+G   K
Sbjct: 35  MIAPVLEQMDSEVGSKLKIVKVNVDDNPDSAGRFGVMSIPTLIVFKDGQPVDKVIGFQPK 94

Query: 61  DSLKNIVAKH 70
           ++L   V KH
Sbjct: 95  EALMATVGKH 104


>Q9K8A8.1 Q9K8A8_BACHD Thioredoxin
          Length = 104

 Score = 97.8 bits (242), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 56/70 (80%)

Query: 1   MLAPILEELSTELGDDVKIAKLNVDENPETASRFGVMSIPTLIFFKDGQPVDKVVGLNSK 60
           M+AP+LEEL  E+GD VKIAKL+VDEN ETAS+F VMSIPTLI FKDGQ VD+V G   K
Sbjct: 34  MIAPVLEELDGEMGDKVKIAKLDVDENQETASKFNVMSIPTLIVFKDGQVVDQVTGFQPK 93

Query: 61  DSLKNIVAKH 70
           D+L  ++ KH
Sbjct: 94  DALAELLNKH 103


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.134    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 409,330,645
Number of extensions: 13346521
Number of successful extensions: 32810
Number of sequences better than 1.0e-05: 2073
Number of HSP's gapped: 33014
Number of HSP's successfully gapped: 2076
Length of query: 71
Length of database: 3,060,696,203
Length adjustment: 42
Effective length of query: 29
Effective length of database: 2,665,013,573
Effective search space: 77285393617
Effective search space used: 77285393617
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)