BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0434.0007.p
         (51 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KEJ6.1 B3KEJ6_9BACI Putative uncharacterized protein                 79   9e-14
B1DIY8.1 B1DIY8_9BACL Putative uncharacterized protein                 65   2e-09

>B3KEJ6.1 B3KEJ6_9BACI Putative uncharacterized protein
          Length = 51

 Score = 79.3 bits (194), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 40/49 (81%)

Query: 1  MDVNAHTRDPREHVNEEPRNDLGDLLAGFFGMTGFMTVVFFGMVIIKFL 49
          MDVN    DPREH+NEEPRND GDL+ GF GM GFMT++FFG VIIKFL
Sbjct: 1  MDVNVRVNDPREHINEEPRNDFGDLMMGFVGMFGFMTIIFFGFVIIKFL 49


>B1DIY8.1 B1DIY8_9BACL Putative uncharacterized protein
          Length = 48

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 36/44 (81%)

Query: 6  HTRDPREHVNEEPRNDLGDLLAGFFGMTGFMTVVFFGMVIIKFL 49
          + RDPREHVNEEPR+DL D++ GF GM GFMTV+F   VIIKF+
Sbjct: 3  NVRDPREHVNEEPRHDLMDVMTGFGGMLGFMTVIFAAAVIIKFV 46


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.328    0.145    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 311,189,663
Number of extensions: 8570430
Number of successful extensions: 26692
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 26692
Number of HSP's successfully gapped: 2
Length of query: 51
Length of database: 3,060,696,203
Length adjustment: 24
Effective length of query: 27
Effective length of database: 2,834,591,843
Effective search space: 76533979761
Effective search space used: 76533979761
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)