BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0434.0003.p
         (98 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KDF4.1 B3KDF4_9BACI Putative uncharacterized protein                115   2e-24
B1DJ01.1 B1DJ01_9BACL YuiB                                             82   1e-14

>B3KDF4.1 B3KDF4_9BACI Putative uncharacterized protein
          Length = 99

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 64/96 (66%)

Query: 3  FIPXXXXXXXXXXXXXGIGFILNMLMKTTWFPAYLFVIVILPVVVYSIWDRSAMSLWEHL 62
          FIP             GIGFILNMLMKTTWFP +LFVIVILPVVVYS+WDR  MS W H+
Sbjct: 4  FIPVLVLMILFFVMMFGIGFILNMLMKTTWFPCFLFVIVILPVVVYSLWDRGQMSFWTHV 63

Query: 63 STFHLVDYLTXXXXXXXXXXSGWTIQKLRLGGYKMF 98
           +F LVDYLT          SGWTI+ LR+ G++MF
Sbjct: 64 GSFQLVDYLTGVAGLIGAYMSGWTIKTLRIKGFRMF 99


>B1DJ01.1 B1DJ01_9BACL YuiB
          Length = 95

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 54/80 (67%), Gaps = 1/80 (1%)

Query: 19 GIGFILNMLMKTTWFPAYLFVIVILPVVVYSIWDRSAMSLWEHLSTFHLVDYLTXXXXXX 78
          GIGFILNML+KTTWFP Y+FVIV+LP+ ++S WD S +S  ++ + F  VD +       
Sbjct: 17 GIGFILNMLLKTTWFPIYVFVIVLLPIGIWSTWDHS-VSFVDNFTEFTYVDVIPVIGALA 75

Query: 79 XXXXSGWTIQKLRLGGYKMF 98
              SGW I+ LR GGYKMF
Sbjct: 76 GAYISGWAIRALRRGGYKMF 95


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.333    0.146    0.499 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 433,526,452
Number of extensions: 11305134
Number of successful extensions: 34743
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 34834
Number of HSP's successfully gapped: 4
Length of query: 98
Length of database: 3,060,696,203
Length adjustment: 67
Effective length of query: 31
Effective length of database: 2,429,488,198
Effective search space: 75314134138
Effective search space used: 75314134138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 125 (52.8 bits)