BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0430.0008.p (250 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q466C0.1 Q466C0_METBF Putative uncharacterized protein 112 3e-23 A3DF76.1 A3DF76_CLOTH YD repeat protein 97 1e-18 B4BHQ2.1 B4BHQ2_CLOTM YD repeat protein 96 3e-18 Q64AY7.1 Q64AY7_9ARCH Rhs family protein 96 3e-18 A5GE16.1 A5GE16_GEOUR YD repeat protein 96 3e-18 >Q466C0.1 Q466C0_METBF Putative uncharacterized protein Length = 2096 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/203 (35%), Positives = 99/203 (48%), Gaps = 2/203 (0%) Query: 1 MPLQFGLSYLSRDPYKGVNGLGWHHSYEWKLNPLNGGKVEVMSPDGSLFEYVPLAGGQYL 60 +PL SY S D G+ G GW +Y L N G V V+ DG Y+ G Y Sbjct: 671 LPLTVSRSYNSMDNRSGLFGSGWTFNYNMNLTVDNNGNVTVLGGDGHTDTYILNPDGTYS 730 Query: 61 TPRGTDWTLSAPSSGEYTLASPQGDLYRFNGEGLLQSVTDLNGNQIAFAYQGKKLEEVST 120 P L S YTL Y F+ EG L ++ D NGNQI F Y G++L +V+ Sbjct: 731 RPLSVFDDLIKNSDETYTLTKKDQTKYNFSSEGKLVNIVDKNGNQINFTYTGEQLTKVTD 790 Query: 121 A-GASLSLSYDGAGKLIAVSDLTGRQMSFHYDPASGDMTSITDVDGATTKLTYDDNHHVL 179 A G L L+YD G +I+++D GR S+ YD G++ + G TYD+NH + Sbjct: 791 ASGRELILAYDHNGHIISITDPMGRVWSYSYDD-QGNLIQCKNPIGGKLSYTYDENHWMT 849 Query: 180 SVTDAKGTAVMSVAYDDHQRVTS 202 S+TD +G M YD+ V S Sbjct: 850 SITDPRGNHPMKNTYDEKGHVIS 872 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 4/132 (3%) Query: 87 YRFNGEGLLQSVTDLNGNQIAFAYQ--GKKLEEVSTAGASLSLSYDGAGKLIAVSDLTGR 144 + +N G ++TD NG AF Y G+ + G + YD L++++D G+ Sbjct: 1030 FSYNNNGDQITITDANGKTSAFTYDTVGRVTTKTDAKGNRYTFQYDALDNLLSITDPMGQ 1089 Query: 145 QMSFHYDPASGDMTSITDVDGATTKLTYDDNHHVLSVTDAKGTAVMSVAYDDHQRVTSFT 204 S YD A+G+ S TD +G TK +YD + ++ VT+A G V+ YD + S T Sbjct: 1090 TTSNKYD-AAGNKISFTDAEGRLTKYSYDSLNQLVKVTNAMG-GVVRYKYDAVGNLVSTT 1147 Query: 205 DFYGNTSSSAYE 216 D G+ +S Y+ Sbjct: 1148 DAKGHKTSYDYD 1159 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 4/131 (3%) Query: 89 FNGEGLLQSVTDLNGNQIAFAYQGKK--LEEVSTAGASLSLSYDGAGKLIAVSDLTGRQM 146 ++ + L S TD ++ +F Y ++ + G SYD G++I +D + Sbjct: 969 YDSKNNLISQTDELRHKTSFEYDDNSNLIKSIDALGHETVFSYDKYGQVIGETDSNKKTA 1028 Query: 147 SFHYDPASGDMTSITDVDGATTKLTYDDNHHVLSVTDAKGTAVMSVAYDDHQRVTSFTDF 206 +F Y+ +GD +ITD +G T+ TYD V + TDAKG + YD + S TD Sbjct: 1029 TFSYN-NNGDQITITDANGKTSAFTYDTVGRVTTKTDAKGNR-YTFQYDALDNLLSITDP 1086 Query: 207 YGNTSSSAYEG 217 G T+S+ Y+ Sbjct: 1087 MGQTTSNKYDA 1097 >A3DF76.1 A3DF76_CLOTH YD repeat protein Length = 1917 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 10/214 (4%) Query: 1 MPLQFGLSYLSRDPYKGVNGLGWHHSYEWKLNPLNGGK-VEVMSPDGSL--FEYVPLAGG 57 M L+ Y S D +G+ G GW YE L + + V PDG++ FEY G Sbjct: 165 MALEITRYYNSMDNTEGIFGKGWKIDYETCLKKKEDSEDIIVAYPDGNIRVFEYTDT--G 222 Query: 58 QYLTPRGTDWTLSAPSSGEYTLASPQGDLYRFNGEGLLQSVTDLNGNQIAFAYQGKKL-- 115 + +P+G TL G Y L +G Y+++ G L S++D N N+I F Y + L Sbjct: 223 SFKSPKGVYDTLLKTEDGTYILKVQKGITYKYDQAGNLISISDSNSNEIQFKYNREGLLS 282 Query: 116 EEVSTAGASLSLSYDGAGKLIAVSDLTGRQMSFHYDPASGDMTSITDVDGATTKLTYDDN 175 +S G L SY+G G++++++D TGR + + YD G++T + DG Y DN Sbjct: 283 SVMSPGGKLLMFSYEG-GRIVSITDHTGRNLKYKYDE-KGNLTQVVYPDGGKITYAY-DN 339 Query: 176 HHVLSVTDAKGTAVMSVAYDDHQRVTSFTDFYGN 209 ++S+TD G + YD+ RV D N Sbjct: 340 IGLISITDQNGNTYVQNTYDEKGRVVRQLDHENN 373 >B4BHQ2.1 B4BHQ2_CLOTM YD repeat protein Length = 996 Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 71/214 (33%), Positives = 105/214 (49%), Gaps = 9/214 (4%) Query: 1 MPLQFGLSYLSRDPYKGVNGLGWHHSYEWKLNPLNGGK-VEVMSPDGSL--FEYVPLAGG 57 +PL+ Y S D G+ G GW YE L + + + + PDGS+ FE+ Sbjct: 162 IPLEIRRYYNSIDQTCGILGKGWRIGYETGLMRVEDSQDILTVYPDGSIGVFEFDE-KDN 220 Query: 58 QYLTPRGTDWTLSAPSSGEYTLASPQGDLYRFNGEGLLQSVTDLNGNQIAFAYQGKKL-- 115 +Y+ PRG L +TL G YR++ G L S++DLNGN I+ Y G+ + Sbjct: 221 KYIAPRGIFDILQKNEDESFTLKLHDGTTYRYDKSGNLTSISDLNGNAISIKYNGQGMIS 280 Query: 116 EEVSTAGASLSLSYDGAGKLIAVSDLTGRQMSFHYDPASGDMTSITDVDGATTKLTYDDN 175 +S G L SY+ KL ++D TGR++ + YD SG++ + DG K Y DN Sbjct: 281 SVISPGGKFLDFSYEDL-KLRKITDHTGREIIYSYD-KSGNLIQVKYPDGGIIKYGY-DN 337 Query: 176 HHVLSVTDAKGTAVMSVAYDDHQRVTSFTDFYGN 209 ++S+TD G + YD+ RV D GN Sbjct: 338 KGMISITDQNGNTYVQNTYDEAGRVVKQLDHEGN 371 >Q64AY7.1 Q64AY7_9ARCH Rhs family protein Length = 289 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 5/168 (2%) Query: 20 GLGWHHSYEWKLNPLNGGKVEVMSPDGSLFEYVPLAGGQYLTPRGTDWTLSAPSSGEYTL 79 G GW +Y L + G V + DGS + P+ G Y +P G L +TL Sbjct: 114 GYGWTFNYNTYL--VEKGNVTLFDGDGSAHTFTPIGDGDYTSPPGIHSKLKKNPGASFTL 171 Query: 80 ASPQGDLYRFNGEGLLQSVTDLNGNQIAFAYQGKKLEEVS-TAGASLSLSYDGAGKLIAV 138 G Y F+ G+LQ++TD NGN++ F Y KL V +G +L+ SYDG ++ + Sbjct: 172 RFKDGSSYNFDENGVLQNITDKNGNRLTFRYTDGKLTLVEDDSGLNLTFSYDG-NRISNI 230 Query: 139 SDLTGRQMSFHYDPASGDMTSITDVDGATTKLTYDDNHHVLSVTDAKG 186 D RQ+++ YD A+G++ ITD G +T +Y D+H + S+ D +G Sbjct: 231 VDPLSRQITYEYD-ANGNLIKITDAMGNSTLYSYFDDHKLKSIVDREG 277 >A5GE16.1 A5GE16_GEOUR YD repeat protein Length = 1600 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/214 (33%), Positives = 103/214 (48%), Gaps = 6/214 (2%) Query: 7 LSYLSRDPYKGVNGLGWHHSYEWKLNPLNGGKVEVMSPDGSLFEYVPLAGGQYLTPRGTD 66 L Y S +P G G GW H+YE L + G ++ DG L +G Y++P G Sbjct: 525 LYYNSINPMTGTLGTGWSHNYEIALQ--DQGNGAILFKDGQLSRLYTRSGDTYVSPPGDY 582 Query: 67 WTLSAPSSGEYTLASPQGDLYRFNGEGLLQSVTDLNGNQIAFAYQGKKLEEVST-AGASL 125 TL + G + + G + F+ G + S D NG + FAY G L V+ AG ++ Sbjct: 583 STLVKNTDGTFVITEKDGLNHNFDQWGRILSRLDKNGTAMTFAYDGGNLSGVTDGAGRTV 642 Query: 126 SLSYDGAGKLIAVSDLTGRQMSFHYDPASGDMTSITDVDGATTKLTYDDNHHVLSVTDAK 185 + +YDG KL++V+D G +F YD G++ ++T+ D TYD +L+ D Sbjct: 643 TFAYDGTNKLLSVTDPKGNAYTFGYD--GGNLITVTNPDSGQWSYTYDPAGFLLTKADPG 700 Query: 186 GTAVMSVAYDDHQRVTSFTDFYGNTSSSAYEGRV 219 G V V YDD RV S TD G + Y V Sbjct: 701 GNVVTYV-YDDTHRVISGTDPEGRSRDLDYAASV 733 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,604,297,265 Number of extensions: 71829836 Number of successful extensions: 151345 Number of sequences better than 1.0e-05: 311 Number of HSP's gapped: 150516 Number of HSP's successfully gapped: 560 Length of query: 250 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 118 Effective length of database: 1,817,122,223 Effective search space: 214420422314 Effective search space used: 214420422314 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)