BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0430.0004.p (151 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK83.1 B3KK83_9BACI Anti-sigma F factor EC=2.7.11.1 215 1e-54 O32721.1 SP2AB_PAEPO Anti-sigma F factor EC=2.7.11.1 213 5e-54 B1DJB8.1 B1DJB8_9BACL Putative anti-sigma regulatory factor, ser... 197 4e-49 C0ZC63.1 C0ZC63_BREBN Anti-sigma-F factor EC=2.7.11.1 178 1e-43 C5D403.1 C5D403_9BACI Anti-sigma regulatory factor, serine/threo... 176 7e-43 >B3KK83.1 B3KK83_9BACI Anti-sigma F factor EC=2.7.11.1 Length = 152 Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 105/144 (72%), Positives = 115/144 (79%) Query: 8 NFMNVQFAALSENEXXXXXXXXXXXXXLDPTMEELNDLKTVVSEAVTNCIIHGYDSDPEG 67 NFM++QFAA SENE +DP M+ELNDLKTVVSEAVTN IIHGYDSDPEG Sbjct: 9 NFMSLQFAAKSENESFARVAVAAFISQMDPNMDELNDLKTVVSEAVTNSIIHGYDSDPEG 68 Query: 68 IVSISASIEHETVHLTIEDKGRGIEDLELAQQPLYTSKPELERSGMGFTIMENFMDEFEV 127 +V I ASI+ + + L IED G GIEDLE+A+QPLYTSKPELERSGMGFTIMENFMDEFEV Sbjct: 69 VVKIEASIDGDMITLRIEDSGHGIEDLEMAKQPLYTSKPELERSGMGFTIMENFMDEFEV 128 Query: 128 TSEPGRGTSISMKKTIVSKKALYN 151 SEPG GTSI MKK I SKKALYN Sbjct: 129 VSEPGNGTSIKMKKRIESKKALYN 152 >O32721.1 SP2AB_PAEPO Anti-sigma F factor EC=2.7.11.1 Length = 151 Score = 213 bits (541), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 104/151 (68%), Positives = 116/151 (76%) Query: 1 MTKSEAGNFMNVQFAALSENEXXXXXXXXXXXXXLDPTMEELNDLKTVVSEAVTNCIIHG 60 M + NFM++QFAA SENE LDPTM+EL+DLKTVVSEAVTN IIHG Sbjct: 1 MREGTGNNFMSLQFAAKSENEAFARVAVAAFISRLDPTMDELSDLKTVVSEAVTNSIIHG 60 Query: 61 YDSDPEGIVSISASIEHETVHLTIEDKGRGIEDLELAQQPLYTSKPELERSGMGFTIMEN 120 YDSDP G+V+I IE + + L +ED GRGIEDLELA+QPLYTSKPELERSGMGFTIMEN Sbjct: 61 YDSDPSGVVTIKVGIEADVITLVVEDAGRGIEDLELAKQPLYTSKPELERSGMGFTIMEN 120 Query: 121 FMDEFEVTSEPGRGTSISMKKTIVSKKALYN 151 FMDEFE SEPG GTS+ MKK I SKKALYN Sbjct: 121 FMDEFEAVSEPGGGTSVRMKKRIESKKALYN 151 >B1DJB8.1 B1DJB8_9BACL Putative anti-sigma regulatory factor, serine/threonine protein kinase EC=2.7.11.1 Length = 147 Score = 197 bits (500), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 97/144 (67%), Positives = 110/144 (76%) Query: 8 NFMNVQFAALSENEXXXXXXXXXXXXXLDPTMEELNDLKTVVSEAVTNCIIHGYDSDPEG 67 N M + F+A SENE LDPT+EELNDLKT VSEAVTN IIHGYDSDP G Sbjct: 4 NEMTLSFSARSENEAFARIAVASFVSQLDPTLEELNDLKTAVSEAVTNSIIHGYDSDPAG 63 Query: 68 IVSISASIEHETVHLTIEDKGRGIEDLELAQQPLYTSKPELERSGMGFTIMENFMDEFEV 127 V+I ASI+ + V + I D GRGIEDLELA+QPL+TSKPE+ERSGMGFTIMENFMD FEV Sbjct: 64 KVTIEASIDGDVVSIAIWDNGRGIEDLELARQPLFTSKPEMERSGMGFTIMENFMDRFEV 123 Query: 128 TSEPGRGTSISMKKTIVSKKALYN 151 TSE G+GT ++M K I SKKALYN Sbjct: 124 TSELGQGTRVAMLKRIESKKALYN 147 >C0ZC63.1 C0ZC63_BREBN Anti-sigma-F factor EC=2.7.11.1 Length = 148 Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 84/144 (58%), Positives = 105/144 (72%) Query: 8 NFMNVQFAALSENEXXXXXXXXXXXXXLDPTMEELNDLKTVVSEAVTNCIIHGYDSDPEG 67 NFM+V FAALS+NE LD TM+EL ++KTV+SEAVTN IIHGYD +PEG Sbjct: 5 NFMSVSFAALSQNEAFARVAVAAFISQLDITMDELEEIKTVISEAVTNAIIHGYDENPEG 64 Query: 68 IVSISASIEHETVHLTIEDKGRGIEDLELAQQPLYTSKPELERSGMGFTIMENFMDEFEV 127 +V IS I+ +++ L +ED GRGIED+E A QPLYT+KPELERSGMGFTIMENFMD EV Sbjct: 65 VVQISVRIQEDSIDLIVEDNGRGIEDVEQAMQPLYTTKPELERSGMGFTIMENFMDSLEV 124 Query: 128 TSEPGRGTSISMKKTIVSKKALYN 151 + G+GT++ + K + KAL N Sbjct: 125 ATVVGKGTTVRLTKRLAFAKALQN 148 >C5D403.1 C5D403_9BACI Anti-sigma regulatory factor, serine/threonine protein kinase EC=2.7.11.1 Length = 146 Score = 176 bits (446), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 87/144 (60%), Positives = 107/144 (74%) Query: 8 NFMNVQFAALSENEXXXXXXXXXXXXXLDPTMEELNDLKTVVSEAVTNCIIHGYDSDPEG 67 N M++QF+ALS+NE LDPTM+EL ++KTVVSEAVTN IIHGY++DP G Sbjct: 3 NEMHLQFSALSQNESFARVTVAAFVAQLDPTMDELTEIKTVVSEAVTNAIIHGYNNDPNG 62 Query: 68 IVSISASIEHETVHLTIEDKGRGIEDLELAQQPLYTSKPELERSGMGFTIMENFMDEFEV 127 IV IS IE VHLTI+D+G GI ++E A+QPL+T+KPELERSGMGFTIMENFMDE V Sbjct: 63 IVYISVVIEDGVVHLTIKDEGVGIANIEEARQPLFTTKPELERSGMGFTIMENFMDEVVV 122 Query: 128 TSEPGRGTSISMKKTIVSKKALYN 151 SE +GT++ +KK I KAL N Sbjct: 123 QSEVNKGTTVYLKKYITKSKALCN 146 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.310 0.128 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 755,285,150 Number of extensions: 26806179 Number of successful extensions: 63226 Number of sequences better than 1.0e-05: 287 Number of HSP's gapped: 63690 Number of HSP's successfully gapped: 287 Length of query: 151 Length of database: 3,060,696,203 Length adjustment: 113 Effective length of query: 38 Effective length of database: 1,996,121,508 Effective search space: 75852617304 Effective search space used: 75852617304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 125 (52.8 bits)