BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0430.0003.p
         (120 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

O32720.1 SP2AA_PAEPO Anti-sigma F factor antagonist                   184   3e-45
B3KK82.1 B3KK82_9BACI Anti-sigma factor antagonist                    178   1e-43
B1DJB9.1 B1DJB9_9BACL Anti-sigma factor antagonist                    165   1e-39
Q9KCN3.1 Q9KCN3_BACHD Anti-sigma factor antagonist                    132   1e-29
Q81MF3.1 Q81MF3_BACAN Anti-sigma factor antagonist                    125   9e-28

>O32720.1 SP2AA_PAEPO Anti-sigma F factor antagonist
          Length = 117

 Score =  184 bits (466), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 98/116 (84%)

Query: 4   MNSHVEMEHHRGVLIVRLSGELDHHAAEYVRMDMDEAIMRGQVEHLILSLKELQFMDSSG 63
           MN  +EMEHHRGVLIVRLSGELDHH ++ VRM MDEAI R Q EH++LSLK LQFMDSSG
Sbjct: 1   MNLQIEMEHHRGVLIVRLSGELDHHTSDMVRMQMDEAIQRRQCEHIVLSLKNLQFMDSSG 60

Query: 64  LGVILGRYKLIRSKGGKMVVCDAAPPVQRLLEMSGLFKIMPLYDDESAALSDLEVA 119
           LGVILGRYKLI  KGG+M VCD  PPV RLL+MSGLFKIMP+YD+E  AL++LEV 
Sbjct: 61  LGVILGRYKLINQKGGEMAVCDVNPPVHRLLDMSGLFKIMPIYDNEVNALTELEVV 116


>B3KK82.1 B3KK82_9BACI Anti-sigma factor antagonist
          Length = 117

 Score =  178 bits (452), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/116 (74%), Positives = 97/116 (83%)

Query: 4   MNSHVEMEHHRGVLIVRLSGELDHHAAEYVRMDMDEAIMRGQVEHLILSLKELQFMDSSG 63
           MN HV+MEHHR VLIVRLSGELDHH A++VRM +DEAI R Q EHL+LSLK+L FMDSSG
Sbjct: 1   MNLHVDMEHHRHVLIVRLSGELDHHTADHVRMQLDEAIQRRQTEHLVLSLKDLDFMDSSG 60

Query: 64  LGVILGRYKLIRSKGGKMVVCDAAPPVQRLLEMSGLFKIMPLYDDESAALSDLEVA 119
           LGVILGRYK I+ KGGKM VCD  P V RLL+MSGLFKIMP+Y++E  ALS LEV 
Sbjct: 61  LGVILGRYKFIKQKGGKMAVCDVKPQVYRLLDMSGLFKIMPIYENEGTALSGLEVV 116


>B1DJB9.1 B1DJB9_9BACL Anti-sigma factor antagonist
          Length = 117

 Score =  165 bits (417), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/116 (69%), Positives = 92/116 (79%)

Query: 4   MNSHVEMEHHRGVLIVRLSGELDHHAAEYVRMDMDEAIMRGQVEHLILSLKELQFMDSSG 63
           M+   E+EH+R VLIVRL GELDHH A+ VR  M+  IMRG+  H+ILSLK+LQFMDSSG
Sbjct: 1   MSLQAELEHYRNVLIVRLRGELDHHTADIVRNKMEAEIMRGESHHIILSLKDLQFMDSSG 60

Query: 64  LGVILGRYKLIRSKGGKMVVCDAAPPVQRLLEMSGLFKIMPLYDDESAALSDLEVA 119
           LGVILGRYK IRSKGGKMVVCD  P V RL EMSGLFKIM +YD+E  A+S LEV 
Sbjct: 61  LGVILGRYKQIRSKGGKMVVCDVNPSVYRLFEMSGLFKIMSIYDNERMAISSLEVV 116


>Q9KCN3.1 Q9KCN3_BACHD Anti-sigma factor antagonist
          Length = 116

 Score =  132 bits (331), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 89/116 (76%)

Query: 4   MNSHVEMEHHRGVLIVRLSGELDHHAAEYVRMDMDEAIMRGQVEHLILSLKELQFMDSSG 63
           M+  V++E    VL+VRL GELDHH AE ++  ++E + +G V+H++L+L++L+FMDSSG
Sbjct: 1   MSLDVKLEQKDTVLLVRLIGELDHHTAEQLKRQVEEVLSQGVVKHIVLNLQQLEFMDSSG 60

Query: 64  LGVILGRYKLIRSKGGKMVVCDAAPPVQRLLEMSGLFKIMPLYDDESAALSDLEVA 119
           LGVILGRYK +++ GG+MVVC  +P V+RL EMSGLFKI+ L ++E  AL  L VA
Sbjct: 61  LGVILGRYKQVKNSGGEMVVCAISPTVKRLFEMSGLFKIIRLEENEQFALQTLGVA 116


>Q81MF3.1 Q81MF3_BACAN Anti-sigma factor antagonist
          Length = 116

 Score =  125 bits (315), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 65/116 (56%), Positives = 85/116 (73%)

Query: 4   MNSHVEMEHHRGVLIVRLSGELDHHAAEYVRMDMDEAIMRGQVEHLILSLKELQFMDSSG 63
           M+  +++E  R VL VRL+GELDHH AE +R  + + I    V H++LSL+ L FMDSSG
Sbjct: 1   MSLSMQLEVKRDVLCVRLAGELDHHTAEELRTKVTDMIETHGVHHIVLSLENLSFMDSSG 60

Query: 64  LGVILGRYKLIRSKGGKMVVCDAAPPVQRLLEMSGLFKIMPLYDDESAALSDLEVA 119
           LGVILGRYK ++  GG+MVVC  +PPV+RL EMSGLFKI+ L + E+ AL+ L VA
Sbjct: 61  LGVILGRYKHVKGLGGEMVVCAISPPVKRLFEMSGLFKIVRLEESEAHALATLGVA 116


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 640,571,657
Number of extensions: 22736834
Number of successful extensions: 50099
Number of sequences better than 1.0e-05: 333
Number of HSP's gapped: 50263
Number of HSP's successfully gapped: 333
Length of query: 120
Length of database: 3,060,696,203
Length adjustment: 86
Effective length of query: 34
Effective length of database: 2,250,488,913
Effective search space: 76516623042
Effective search space used: 76516623042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)