BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0430.0002.p (397 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK81.1 B3KK81_9BACI Serine-type D-Ala-D-Ala carboxypeptidase E... 572 e-161 B1DJC0.1 B1DJC0_9BACL Serine-type D-Ala-D-Ala carboxypeptidase E... 538 e-151 C0ZC61.1 C0ZC61_BREBN Putative D-alanyl-D-alanine carboxypeptida... 447 e-124 Q5KXJ0.1 Q5KXJ0_GEOKA D-alanyl-D-alanine carboxypeptidase (Penic... 437 e-121 C3IYI6.1 C3IYI6_9BACI Serine-type D-Ala-D-Ala carboxypeptidase E... 437 e-121 >B3KK81.1 B3KK81_9BACI Serine-type D-Ala-D-Ala carboxypeptidase EC=3.4.16.4 Length = 396 Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust. Identities = 269/376 (71%), Positives = 322/376 (85%), Gaps = 3/376 (0%) Query: 22 YAEEKAKAKDTGKNAAVVNLAPGARSAILMDANTGTVVYEKNSHDKLPPASITKIMTMLL 81 YAEE +K G ++ LAP ARSAIL+DA+TGT++YEKNSHDKLPPASITK+MTMLL Sbjct: 24 YAEENSKP---GGGSSQEELAPSARSAILLDADTGTIIYEKNSHDKLPPASITKVMTMLL 80 Query: 82 TVEALDEGKLQLTDKVRTSEYAASMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMA 141 T+EA+DEG+L+ TDKVRTSEYAASMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMA Sbjct: 81 TMEAIDEGQLKWTDKVRTSEYAASMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMA 140 Query: 142 EKLAGSESAFVDLMNQRAGELGLKDTHFANCNGLPAENHYSSAHDIAVISKELLKHERII 201 EK+AGSE FV +MN++A ELG+KDTHF NCNGLPAENHY+SAHDIAV+S+ELLK+++I Sbjct: 141 EKIAGSEEGFVKMMNEKAAELGMKDTHFVNCNGLPAENHYTSAHDIAVMSRELLKYDQIT 200 Query: 202 KYTGSYQDYLRKDTTKPFWLVNTNKLVRFYTGADGLKTGYTAEAKFCLSATAARDGLRAI 261 KYTG+YQDYLRKD+ KPFWLVNTNKLVRFYTGADGLKTGYT+EAKFCLSATA RDGLRA+ Sbjct: 201 KYTGAYQDYLRKDSEKPFWLVNTNKLVRFYTGADGLKTGYTSEAKFCLSATAKRDGLRAV 260 Query: 262 AVVLGEPNTKTRNSEVSGMFDYLFSQYKVHTIHKAGEAIGNVKIEKGVKTKLPLTAKETY 321 AVV+G P+TKTRN+EVS MFDY FSQY +H+I+K GE +G VK++KG ++ + A++ Y Sbjct: 261 AVVMGAPDTKTRNNEVSRMFDYAFSQYTMHSIYKPGEVLGIVKVQKGNVPEISIQAEKDY 320 Query: 322 SVLLKKGITQEGIRHELVVPESIKAPVKAGQAVGKLVVYQGTDKIKEYELKADTDVPKAG 381 SVL+KKG+ IRHE+ + ++KAPV AGQ +GKL VYQG +KE+EL + V KAG Sbjct: 321 SVLVKKGVKNPDIRHEIQLDPNLKAPVAAGQVIGKLSVYQGEQLVKEFELTSPVKVEKAG 380 Query: 382 WWKLFKRTAGSMFRVD 397 +WKLFKRT G +F VD Sbjct: 381 FWKLFKRTTGKLFHVD 396 >B1DJC0.1 B1DJC0_9BACL Serine-type D-Ala-D-Ala carboxypeptidase EC=3.4.16.4 Length = 405 Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust. Identities = 250/358 (69%), Positives = 302/358 (84%) Query: 37 AVVNLAPGARSAILMDANTGTVVYEKNSHDKLPPASITKIMTMLLTVEALDEGKLQLTDK 96 A ++LAP ARSA+LMDA++GTV+YEK+S+ KLPPASITK+MTMLL +EALD+GK++LTDK Sbjct: 47 ASLDLAPSARSAVLMDADSGTVIYEKDSNVKLPPASITKVMTMLLIMEALDDGKIKLTDK 106 Query: 97 VRTSEYAASMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKLAGSESAFVDLMN 156 V TSEYAASMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKLAGSE FV +MN Sbjct: 107 VPTSEYAASMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKLAGSEQQFVVMMN 166 Query: 157 QRAGELGLKDTHFANCNGLPAENHYSSAHDIAVISKELLKHERIIKYTGSYQDYLRKDTT 216 ++A +LGL++THFANCNGLPA +HY+SAHDIAV+S+ELLKH I KYTGSYQDYLRK + Sbjct: 167 EKAQQLGLQNTHFANCNGLPAADHYTSAHDIAVMSRELLKHSEITKYTGSYQDYLRKTSE 226 Query: 217 KPFWLVNTNKLVRFYTGADGLKTGYTAEAKFCLSATAARDGLRAIAVVLGEPNTKTRNSE 276 KPFWLVNTNKLVRFY+GADGLKTG+T EAKFCL+ATA RD LR IAVV+GEPNTKTRN+E Sbjct: 227 KPFWLVNTNKLVRFYSGADGLKTGFTNEAKFCLTATAKRDNLRVIAVVMGEPNTKTRNAE 286 Query: 277 VSGMFDYLFSQYKVHTIHKAGEAIGNVKIEKGVKTKLPLTAKETYSVLLKKGITQEGIRH 336 VS M D+ F+QY H I K G+ +G +K+EKG ++PL AK YS+LLKKG + IR+ Sbjct: 287 VSQMLDFTFAQYTTHPIFKEGDTMGTIKVEKGAVREIPLVAKHPYSILLKKGAATQDIRY 346 Query: 337 ELVVPESIKAPVKAGQAVGKLVVYQGTDKIKEYELKADTDVPKAGWWKLFKRTAGSMF 394 EL + + +KAPV GQ++GKLVVYQG +KE+ + A + KAGW+KL KR+ G +F Sbjct: 347 ELQIDQPLKAPVAIGQSIGKLVVYQGDQVVKEFPVDAPQSINKAGWFKLLKRSFGGLF 404 >C0ZC61.1 C0ZC61_BREBN Putative D-alanyl-D-alanine carboxypeptidase EC=3.4.16.4 Length = 394 Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/373 (57%), Positives = 286/373 (76%), Gaps = 6/373 (1%) Query: 23 AEEKAKAKDTGKNAAVVNLAPGARSAILMDANTGTVVYEKNSHDKLPPASITKIMTMLLT 82 A+EKA G+ + + AP A SA++++A+TGTV+YEKN+++K+PPASITK+MTMLL Sbjct: 24 AKEKA-----GQQKSDNHFAPQASSAVMIEADTGTVLYEKNANEKMPPASITKVMTMLLI 78 Query: 83 VEALDEGKLQLTDKVRTSEYAASMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAE 142 +EA++ G+L+LTDKVRTSE AASMGGSQIFL+PGEEMTV++MLKGIA+ASGNDASVAMAE Sbjct: 79 MEAVERGELKLTDKVRTSERAASMGGSQIFLQPGEEMTVEDMLKGIAIASGNDASVAMAE 138 Query: 143 KLAGSESAFVDLMNQRAGELGLKDTHFANCNGLPAENHYSSAHDIAVISKELLKHERIIK 202 LAG+E +FV MN+RA +LG+K+THF N NGLPA NHYSSA DIA++S+ELLKHE I K Sbjct: 139 HLAGTEESFVTRMNERAQQLGMKNTHFVNSNGLPAANHYSSAGDIAIMSRELLKHEGITK 198 Query: 203 YTGSYQDYLRKDTTKPFWLVNTNKLVRFYTGADGLKTGYTAEAKFCLSATAARDGLRAIA 262 +TG+YQDYLRKDT PFWLVNTNKLVRFY G DGLKTGYT EAK+CL+ATA R+ +R IA Sbjct: 199 FTGTYQDYLRKDTESPFWLVNTNKLVRFYEGVDGLKTGYTGEAKYCLTATAKRNNMRVIA 258 Query: 263 VVLGEPNTKTRNSEVSGMFDYLFSQYKVHTIHKAGEAIGNVKIEKGVKTKLPLTAKETYS 322 VVLGEP+ KTRN+EVS MF+Y F+ +KV ++K GE + + ++KG K+++ S Sbjct: 259 VVLGEPDVKTRNNEVSTMFNYAFTHFKVTPMYKKGEPVRTLVVDKGQKSQINAVTPHAVS 318 Query: 323 VLLKKGITQEGIRHELVVPESIKAPVKAGQAVGKLVVYQGTDK-IKEYELKADTDVPKAG 381 +L+KKG + + + E+V+ E++ AP+ Q +G + + K + +L + V KA Sbjct: 319 LLMKKGESADTFQKEIVIKEAVHAPIAKNQVIGHIFIRTKDGKEVNRIDLFPEDQVDKAN 378 Query: 382 WWKLFKRTAGSMF 394 W++ KRT S+ Sbjct: 379 MWEILKRTTKSIL 391 >Q5KXJ0.1 Q5KXJ0_GEOKA D-alanyl-D-alanine carboxypeptidase (Penicilin binding protein) EC=3.4.16.4 Length = 391 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/359 (57%), Positives = 273/359 (76%) Query: 37 AVVNLAPGARSAILMDANTGTVVYEKNSHDKLPPASITKIMTMLLTVEALDEGKLQLTDK 96 A V LA A+SAIL++ +TG V+YEKN+H+ LPPAS+TKIMTMLL +EA+DEGKL +K Sbjct: 31 AKVKLADEAKSAILIERDTGKVLYEKNAHEPLPPASMTKIMTMLLVMEAIDEGKLSYDEK 90 Query: 97 VRTSEYAASMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKLAGSESAFVDLMN 156 VR SEYAASMGGSQIFLEPGEEMTVDE+L+GIA+ S NDASVAMAE++AGSE AFV++MN Sbjct: 91 VRASEYAASMGGSQIFLEPGEEMTVDELLRGIAIGSANDASVAMAEQIAGSEEAFVEMMN 150 Query: 157 QRAGELGLKDTHFANCNGLPAENHYSSAHDIAVISKELLKHERIIKYTGSYQDYLRKDTT 216 ++A +LGLK+THFAN GLPAE+HYSSA+D+A++++ELLK+E I KYT Y+DYLR++T Sbjct: 151 EKAKQLGLKNTHFANATGLPAEHHYSSAYDMAMMARELLKYEDITKYTSKYEDYLRENTD 210 Query: 217 KPFWLVNTNKLVRFYTGADGLKTGYTAEAKFCLSATAARDGLRAIAVVLGEPNTKTRNSE 276 K FWLVNTN+LV+FY G DGLKTGYTAEAK+CL+ATA ++G+R IAVV G P K+RN++ Sbjct: 211 KKFWLVNTNRLVKFYPGVDGLKTGYTAEAKYCLTATAKKNGMRVIAVVFGAPTPKSRNAQ 270 Query: 277 VSGMFDYLFSQYKVHTIHKAGEAIGNVKIEKGVKTKLPLTAKETYSVLLKKGITQEGIRH 336 ++ M DY FSQY+ H ++K E + V I KG ++ + E SVL KKG + E I Sbjct: 271 ITKMLDYAFSQYRTHPVYKRNETVARVNISKGKRSSVEAVTSEPVSVLTKKGQSVEQIEK 330 Query: 337 ELVVPESIKAPVKAGQAVGKLVVYQGTDKIKEYELKADTDVPKAGWWKLFKRTAGSMFR 395 + V +++KAPV+ G +G L++ Q +I + A V +A +W LFKR G + Sbjct: 331 VIKVKDNVKAPVRKGDELGVLILKQDGKEILHSPIVAKQTVEEASFWDLFKRVFGRFVQ 389 >C3IYI6.1 C3IYI6_9BACI Serine-type D-Ala-D-Ala carboxypeptidase EC=3.4.16.4 Length = 391 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/359 (57%), Positives = 273/359 (76%) Query: 37 AVVNLAPGARSAILMDANTGTVVYEKNSHDKLPPASITKIMTMLLTVEALDEGKLQLTDK 96 A V LA A+SAIL++ +TG V+YEKN+H+ LPPAS+TKIMTMLL +EA+DEGKL +K Sbjct: 31 AKVKLADEAKSAILIERDTGKVLYEKNAHEPLPPASMTKIMTMLLVMEAIDEGKLSYDEK 90 Query: 97 VRTSEYAASMGGSQIFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKLAGSESAFVDLMN 156 VR SEYAASMGGSQIFLEPGEEMTVDE+L+GIA+ S NDASVAMAE++AGSE AFV++MN Sbjct: 91 VRASEYAASMGGSQIFLEPGEEMTVDELLRGIAIGSANDASVAMAEQIAGSEEAFVEMMN 150 Query: 157 QRAGELGLKDTHFANCNGLPAENHYSSAHDIAVISKELLKHERIIKYTGSYQDYLRKDTT 216 ++A +LGLK+THFAN GLPAE+HYSSA+D+A++++ELLK+E I KYT Y+DYLR++T Sbjct: 151 EKAKQLGLKNTHFANATGLPAEHHYSSAYDMAMMARELLKYEDITKYTSKYEDYLRENTD 210 Query: 217 KPFWLVNTNKLVRFYTGADGLKTGYTAEAKFCLSATAARDGLRAIAVVLGEPNTKTRNSE 276 K FWLVNTN+LV+FY G DGLKTGYTAEAK+CL+ATA ++G+R IAVV G P K+RN++ Sbjct: 211 KKFWLVNTNRLVKFYPGVDGLKTGYTAEAKYCLTATAKKNGMRVIAVVFGAPTPKSRNAQ 270 Query: 277 VSGMFDYLFSQYKVHTIHKAGEAIGNVKIEKGVKTKLPLTAKETYSVLLKKGITQEGIRH 336 ++ M DY FSQY+ H ++K E + V I KG ++ + E SVL KKG + E I Sbjct: 271 ITKMLDYAFSQYRTHPVYKRNETVARVNISKGKRSSVEAVTSEPVSVLTKKGQSVEQIEK 330 Query: 337 ELVVPESIKAPVKAGQAVGKLVVYQGTDKIKEYELKADTDVPKAGWWKLFKRTAGSMFR 395 + V +++KAPV+ G +G L++ Q +I + A V +A +W LFKR G + Sbjct: 331 VIKVKDNVKAPVRKGDELGVLILKQDGKEILHSPIVAKQTVEEASFWDLFKRVFGRFVQ 389 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.130 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,090,283,886 Number of extensions: 84124194 Number of successful extensions: 183203 Number of sequences better than 1.0e-05: 3198 Number of HSP's gapped: 176702 Number of HSP's successfully gapped: 3213 Length of query: 397 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 259 Effective length of database: 1,760,596,133 Effective search space: 455994398447 Effective search space used: 455994398447 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)