BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0427.0024.p (299 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9YE16.1 B9YE16_9FIRM Putative uncharacterized protein 122 6e-26 C0CGL3.1 C0CGL3_9FIRM Putative uncharacterized protein (Fragment) 115 5e-24 C1FSD6.1 C1FSD6_CLOBJ Putative uncharacterized protein 111 9e-23 B1KV28.1 B1KV28_CLOBM Putative uncharacterized protein 111 9e-23 C3L077.1 C3L077_CLOB6 Putative uncharacterized protein 111 9e-23 >B9YE16.1 B9YE16_9FIRM Putative uncharacterized protein Length = 306 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 91/138 (65%) Query: 36 VPKHTASFYVNDFADVIDTKTENYMVNYGVRLHQKDGAQVVLVTVDSTNGVSMEEYATAL 95 VP+ +FYV D+A+VI++K + + L ++G+Q+V+ T D +G ++++ A L Sbjct: 27 VPQPLENFYVADYANVINSKDADAIRTVNKNLEARNGSQIVVATFDFLDGEAIDDVAYDL 86 Query: 96 FNSWGVGSADKNNGVLLLMSIKDDDYWAVPGKGLESTLTDSKISKILSASLEPDFAKKDY 155 FN W +GSA NNGVLL+++I ++DY+ + GKGLE TL S I IL ++LEP+FA +Y Sbjct: 87 FNGWKIGSASDNNGVLLVLAIGEEDYYCLQGKGLEKTLPTSDIQAILDSTLEPEFAAGNY 146 Query: 156 SAGARKTYGALVQSLGGT 173 S GA KT AL Q L T Sbjct: 147 STGALKTVQALAQRLEKT 164 >C0CGL3.1 C0CGL3_9FIRM Putative uncharacterized protein (Fragment) Length = 244 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 92/163 (56%), Gaps = 4/163 (2%) Query: 35 AVPKHTASFYVNDFADVIDTKTENYMVNYGVRLHQKDGAQVVLVTVDSTNGVSMEEYATA 94 A P+ + VND+A ++ T+TE Y+ + V L GAQ+ + T + +ME YA Sbjct: 27 AAPELDPNQAVNDYAGILSTETEAYVGDLSVALQNTCGAQIGVYTTEYIGNSTMEGYAYD 86 Query: 95 LFNSWGVGSADKNNGVLLLMSIKDDDYWAVPGKGLESTLTDSKISKILSASLEPDFAKKD 154 + N+WG+GSADK+NGVLLL+ +DDY+ G GLE+ LT SK+ IL LEP + ++D Sbjct: 87 VLNTWGLGSADKDNGVLLLLVPGEDDYYVTRGAGLEAQLTISKLGTILDEDLEPSWVEQD 146 Query: 155 YSAGARKTYGALVQSLGGTYTETAGSKNYVADNAGVLPKVTKD 197 Y AG +KT A+ + L Y G DNA P D Sbjct: 147 YDAGTQKTVRAIAEELCTIY----GIPVSTLDNAAQAPAAPSD 185 >C1FSD6.1 C1FSD6_CLOBJ Putative uncharacterized protein Length = 286 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 81/141 (57%) Query: 37 PKHTASFYVNDFADVIDTKTENYMVNYGVRLHQKDGAQVVLVTVDSTNGVSMEEYATALF 96 PK T+ YVND+A VID T+ Y+V+ G L QK GAQ+ +V +DS G +E YA +LF Sbjct: 37 PKPTSLKYVNDYARVIDDTTKEYIVSVGNELEQKTGAQMTVVVIDSLEGSDIESYANSLF 96 Query: 97 NSWGVGSADKNNGVLLLMSIKDDDYWAVPGKGLESTLTDSKISKILSASLEPDFAKKDYS 156 WG+G K+NGVL+L+SIKD + G+GLE +TD S+++ +P ++ Y Sbjct: 97 RQWGLGQKGKDNGVLILLSIKDKKWRVEVGRGLEGRITDIYSSRVMDDIAKPLLKEEKYG 156 Query: 157 AGARKTYGALVQSLGGTYTET 177 +K Y + Y T Sbjct: 157 EAMKKAYSVFADDVAKEYNVT 177 >B1KV28.1 B1KV28_CLOBM Putative uncharacterized protein Length = 286 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 81/141 (57%) Query: 37 PKHTASFYVNDFADVIDTKTENYMVNYGVRLHQKDGAQVVLVTVDSTNGVSMEEYATALF 96 PK T+ YVND+A VID T+ Y+V+ G L QK GAQ+ +V +DS G +E YA +LF Sbjct: 37 PKPTSLKYVNDYARVIDDATKEYIVSVGNELEQKTGAQMTVVVIDSLEGSDIESYANSLF 96 Query: 97 NSWGVGSADKNNGVLLLMSIKDDDYWAVPGKGLESTLTDSKISKILSASLEPDFAKKDYS 156 WG+G K+NGVL+L+SIKD + G+GLE +TD S+++ +P ++ Y Sbjct: 97 RQWGLGQKGKDNGVLILLSIKDKKWRVEVGRGLEGRITDIYSSRVMDDIAKPLLKEEKYG 156 Query: 157 AGARKTYGALVQSLGGTYTET 177 +K Y + Y T Sbjct: 157 EAMKKAYSVFADDVAKEYNVT 177 >C3L077.1 C3L077_CLOB6 Putative uncharacterized protein Length = 286 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 81/141 (57%) Query: 37 PKHTASFYVNDFADVIDTKTENYMVNYGVRLHQKDGAQVVLVTVDSTNGVSMEEYATALF 96 PK T+ YVND+A VID T+ Y+V+ G L QK GAQ+ +V +DS G +E YA +LF Sbjct: 37 PKPTSLKYVNDYARVIDDATKEYIVSVGNELEQKTGAQMTVVVIDSLEGSDIESYANSLF 96 Query: 97 NSWGVGSADKNNGVLLLMSIKDDDYWAVPGKGLESTLTDSKISKILSASLEPDFAKKDYS 156 WG+G K+NGVL+L+SIKD + G+GLE +TD S+++ +P ++ Y Sbjct: 97 RQWGLGQKGKDNGVLILLSIKDKKWRVEVGRGLEGRITDIYSSRVMDDIAKPLLKEEKYG 156 Query: 157 AGARKTYGALVQSLGGTYTET 177 +K Y + Y T Sbjct: 157 EAMKKAYSVFADDVAKEYNVT 177 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.130 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,660,065,951 Number of extensions: 69882247 Number of successful extensions: 131947 Number of sequences better than 1.0e-05: 397 Number of HSP's gapped: 131941 Number of HSP's successfully gapped: 399 Length of query: 299 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 164 Effective length of database: 1,788,859,178 Effective search space: 293372905192 Effective search space used: 293372905192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 131 (55.1 bits)