BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0427.0020.p
         (225 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2XU50.1 C2XU50_BACCE Putative uncharacterized protein                 70   2e-10

>C2XU50.1 C2XU50_BACCE Putative uncharacterized protein
          Length = 506

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 92/229 (40%), Gaps = 16/229 (6%)

Query: 1   VVLSIFEAETNLRLNFPELFWGAGGFNFRTHIWEEWVKAEGLPDADSLELLIGGLFTPSQ 60
           +V+     E  +R +     W     +FR  IWE+  K  G   AD +  L+  LF+P +
Sbjct: 280 LVIENVRLELQIRNSHFRNIWLTNTTSFRKTIWEDRAKVVGFVHADEMLTLVESLFSPQK 339

Query: 61  DFIYPLAWAWEEQEVGFLPEDVLDEPDE----AGEEESIPYTPKSIPWSSVSELWLPVFK 116
             I P+ W  EE          +D         G +  +   P S+ W S+  LW P+F+
Sbjct: 340 PSILPMEWGIEEH---------MDIKSSTFGGTGTKRKVYLEPISLDWESILLLWKPIFE 390

Query: 117 GLAEKGSXXXXXXXXXXXXQ-RKWSGTPDAVDLWAQFFHTEITVQPQDADSQGGAADECQ 175
            L   GS               KW    DA D W  F   +      + + Q   +D+  
Sbjct: 391 ELLRAGSVSLKYLQQIDEFTLAKWVENRDAFDFWLAFASMDEPFIISEENIQQIDSDDKA 450

Query: 176 KLIRHLLAANPELEVLRGKVLRTTIQGSHRPSVTWPGLEMSPYTITIIE 224
            L+  L+   PEL VL G+ +  +   S+   V    +++S Y +T+ E
Sbjct: 451 LLLSKLMEKYPELSVLTGRQIFNS--PSNDAVVIRNKIDVSTYILTLKE 497


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.136    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,461,428,780
Number of extensions: 60912830
Number of successful extensions: 119816
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 119815
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 3,060,696,203
Length adjustment: 131
Effective length of query: 94
Effective length of database: 1,826,543,238
Effective search space: 171695064372
Effective search space used: 171695064372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)