BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0427.0018.p (254 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2XU49.1 C2XU49_BACCE Hypothetical Cytosolic Protein 107 1e-21 C1T9R8.1 C1T9R8_9FIRM Putative uncharacterized protein 106 2e-21 B3ZLS0.1 B3ZLS0_BACCE Hypothetical Cytosolic Protein 89 3e-16 C0ESL5.1 C0ESL5_9FIRM Putative uncharacterized protein 84 1e-14 B1RP19.1 B1RP19_CLOPE Putative uncharacterized protein 83 2e-14 >C2XU49.1 C2XU49_BACCE Hypothetical Cytosolic Protein Length = 376 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 18/263 (6%) Query: 6 LNLDYYINHPAEQTVQVWEYIERIYTFLRTAGEREIITREERSLELFDDEKF-------- 57 L+L +Y+ QT W+ I +Y F++ + I REERSL LF EKF Sbjct: 112 LDLSFYLRKKIYQTEDEWKNILILYEFIKRKDSHKEIKREERSLMLFRSEKFHDDIEAEK 171 Query: 58 -LSEKEGAQLLKRLGITLETLKAVTVREHFEYY-----PESLQSVRSILISENHSFYDSA 111 L+ G++L+ RL + L V E F Y+ PE+ + +LI E S + + Sbjct: 172 YLASSAGSRLMNRLQLKPADLLYKVVHEPFHYWKNEAVPEN--HLHEVLIVEGLSTFQTL 229 Query: 112 KR-LIKAGKSVCGLQPDMLIYGEGWKIVSSLMFLAELDADAQGASIGYVGDMDKAGWDIY 170 K LI+ G P LI+GEG++I +L +L ++ D +I Y GD+D G++IY Sbjct: 230 KEVLIQQLPWNFGPIPHYLIWGEGYRISKTLDYLNDIIGDPTQLTIRYTGDIDYEGFNIY 289 Query: 171 GNLKLSYPHLKLNLALTVYEYMANFAKH-TYPYANEQKCTAPHLEIMLQEVSAVPRLKLC 229 + K Y L + LA Y ++++F+ EQK +L ++ E + Sbjct: 290 FDAKSKYRDLNILLAYPFYSFLSSFSNEFATNILTEQKVNNKNLFLLQDEFKNYKEVFEV 349 Query: 230 IKRLLEDNKRIPQEVLNYEVMAR 252 I +L E+ +RI QE +N++ + + Sbjct: 350 INKLWEERRRIAQECINFDTLFK 372 >C1T9R8.1 C1T9R8_9FIRM Putative uncharacterized protein Length = 361 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 126/268 (47%), Gaps = 26/268 (9%) Query: 1 LAAHP-LNLDYYINHPAEQTVQVWEYIERIYTFLRTAGEREII----TREERSLELFDDE 55 +A HP + DYY NHP + EY++ + FL+ AG + + + ERS ++F DE Sbjct: 88 IAYHPRICTDYYSNHPLGHDEDI-EYLDMLDAFLKDAGMYDTLNLPFSVNERSYQIFRDE 146 Query: 56 KFLSEKEGAQLLKRLGITLETLKAVTVREHFEYYPESLQSVRSILISENHSFYDSAKRLI 115 KFL+ G + +R+G+ L E F Y S + L+ EN + + K++ Sbjct: 147 KFLTSARGQEFCRRIGLQWGDLGCYPTFEPFFYVIYETVSPLNCLVVENKDSFFTLKKIF 206 Query: 116 KAG---------------KSVCGLQPDMLIYGEGWKIVSSLMFLAEL-DADAQGASIGYV 159 G + + G++ DMLIYGEG KI+ SL F+ E+ D G ++ Y Sbjct: 207 NRGGNWQKSALDLSDRQARVIDGVKLDMLIYGEGKKILHSLKFMEEIPDCRDTGITLYYF 266 Query: 160 GDMDKAGWDIYGNLKLSYPHLKLNLALTVYEYMANFAKHTYPYANEQKCTAPHLEIMLQE 219 GD+D G IY L +YP K+ + +Y + + P +Q+ HLE L+ Sbjct: 267 GDLDYEGISIYSGLAEAYPEYKIIPFVFLYRGLLKISPR--PMVKKQRLNDLHLENFLKY 324 Query: 220 VSAVPRLKLCIKRLLEDNKRIPQEVLNY 247 SA I +L + IPQE L Y Sbjct: 325 FSA--EETEVILSVLSQSMYIPQEALAY 350 >B3ZLS0.1 B3ZLS0_BACCE Hypothetical Cytosolic Protein Length = 358 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 86/162 (53%), Gaps = 7/162 (4%) Query: 17 EQTVQVWE-YIERIYTFL--RTAGEREIITREERSLELFDDEKFLSEKEGAQLLKRLGIT 73 E + W+ YI+R++ FL + ++ ++ ERS ELF +EKFL +KEG + L LG+ Sbjct: 110 EAEFEKWKFYIDRVHVFLTHNSDTKKNMLKANERSFELFRNEKFLLDKEGIKFLANLGLA 169 Query: 74 LETLKAVTVREHF-EYYPESLQSVRSILISENHSFYDSAKRLIKAG-KSVCGLQPDMLIY 131 L L E F EY + + ++ILI EN +DS K L+ G + G+ DM+IY Sbjct: 170 LSDLNCRRTYEPFVEYQSDPSKKPKNILIIENRDTFDSVKELMMGGVDTWSGITFDMVIY 229 Query: 132 GEGWKIVSSLMFLAELDADAQGASIGYVGDMDKAGWDIYGNL 173 GEG KI S FL E + + Y GD+D G I L Sbjct: 230 GEGDKIQRSFYFLEEY--KLEDYEVYYFGDLDARGIHICSEL 269 >C0ESL5.1 C0ESL5_9FIRM Putative uncharacterized protein Length = 326 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 121/249 (48%), Gaps = 11/249 (4%) Query: 6 LNLDYYINHPAEQTVQVWEYIERIYTFLRTAGE--REIITREERSLELFDDEKFLSEKEG 63 +++DYY+ H E E++ ++ +L+ E + ++ ERS E++ EKFLS+ +G Sbjct: 77 ISVDYYLRH-LESYEADREWVLQLNKYLKERKETLQFKVSANERSFEIWGREKFLSKGQG 135 Query: 64 AQLLKRLGITLETLKAVTVREHFEYYPESLQSVRSILISENH-SFYDSAKRLIKAGKSVC 122 ++LKR G+ + E YY + +++LI EN +F+ +RL++ +++ Sbjct: 136 RRILKRCGLEMSFFNIYETTEPLAYYSRTRNVPQNLLILENKDTFFSMRRRLLEGNETIL 195 Query: 123 GLQPDMLIYGEGWKIVSSLM---FLAELDADAQGASIGYVGDMDKAGWDIYGNLKLSYPH 179 G++ D LIYG G I S E A G I Y GD+D G IY NL + Sbjct: 196 GIKIDTLIYGAGKGIFRSFEDFDLCVEPYMKAAGNQIYYFGDLDYEGIGIYENLSADFGE 255 Query: 180 LKLNLAL--TVYEYMANFAKHTYPYANEQKCTAPHLEIMLQEVSAVPRLKLCIKRLLEDN 237 K N+ Y M + AK ++ +++ + + ++K +K +LE Sbjct: 256 -KWNIVPFEAGYRKMLSKAKGVDSIPETKEGQNRNIKDIFFSYFSTEQVKR-MKEILEKG 313 Query: 238 KRIPQEVLN 246 IPQE+LN Sbjct: 314 YYIPQEILN 322 >B1RP19.1 B1RP19_CLOPE Putative uncharacterized protein Length = 333 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 109/253 (43%), Gaps = 19/253 (7%) Query: 6 LNLDYYINHPAEQTVQVWEYIERIYTFLRTAGE--REIITREERSLELFDDEKFLSEKEG 63 N++YY NH E+ +YI ++ F E ++ ERS +++ EKFL ++EG Sbjct: 84 FNIEYYRNH-LEKYSDHRKYILQLNDFFINKSEFLNYPVSMNERSFQIWGREKFLQKEEG 142 Query: 64 AQLLKRLGITLETLKAVTVREHFEYYPESLQSVRSILISENHSFYDSAKRLIKAGKSVCG 123 +LK L I L TL E YY S + +++LI EN Y + + + + Sbjct: 143 KSILKNLDIDLRTLNYYDTSEPLAYYSRSKNTPQNVLIIENKDTYYTFRNYLINNNKILD 202 Query: 124 LQPDMLIYGEG---WKIVSSLMFLAELDADAQGASIGYVGDMDKAGWDIYGNLKLSYPHL 180 + +IYG G WK E Q Y GD+D G IY + HL Sbjct: 203 EEITTIIYGAGKSVWKTFKDFKVSVEKHVSNQNNKFFYFGDLDYEGILIYE----KFYHL 258 Query: 181 ---KLNLALTVYEYMANFAKHTYPYANEQKCTAPHL----EIMLQEVSAVPRLKLCIKRL 233 + N+ + Y K N K A + LQE S +L L I R+ Sbjct: 259 FSKEYNIRPFINGYKKMIEKSEMMEVNLPKTKAGQNRNIENVFLQEFSK--KLNLKILRI 316 Query: 234 LEDNKRIPQEVLN 246 LE+N IPQE++N Sbjct: 317 LENNLYIPQEIIN 329 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,431,252,729 Number of extensions: 54131458 Number of successful extensions: 141892 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 141877 Number of HSP's successfully gapped: 12 Length of query: 254 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 121 Effective length of database: 1,807,701,208 Effective search space: 218731846168 Effective search space used: 218731846168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)