BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0427.0015.p
         (79 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKM8.1 B3KKM8_9BACI Nitrogen-fixing NifU domain protein              88   2e-16
Q9K7E5.1 Q9K7E5_BACHD Nitrogen fixation protein (NifU protein)         86   1e-15
C4L4W9.1 C4L4W9_EXISA Nitrogen-fixing NifU domain protein              85   2e-15
Q5WDT7.1 Q5WDT7_BACSK Nitrogen fixation protein                        84   3e-15
B1YKX1.1 B1YKX1_EXIS2 Nitrogen-fixing NifU domain protein              84   3e-15

>B3KKM8.1 B3KKM8_9BACI Nitrogen-fixing NifU domain protein
          Length = 81

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 55/81 (67%), Gaps = 2/81 (2%)

Query: 1  MEENG--VLFDEVSEVLLKLRPFLLRDGGDAELVEVENGVAKLRFLGACNGCPSATITLK 58
          M EN    ++DEV+EVL KLRPFL RDGGD ELV+VE+G+ KL+ +GAC  CPS+TITLK
Sbjct: 1  MSENTQTTVYDEVAEVLDKLRPFLQRDGGDVELVDVEDGIVKLKLMGACGSCPSSTITLK 60

Query: 59 XXXXXXXXXXXXXXKEVVQVF 79
                        +EVVQVF
Sbjct: 61 AGIERALVEEVEGIQEVVQVF 81


>Q9K7E5.1 Q9K7E5_BACHD Nitrogen fixation protein (NifU protein)
          Length = 79

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 53/79 (67%)

Query: 1  MEENGVLFDEVSEVLLKLRPFLLRDGGDAELVEVENGVAKLRFLGACNGCPSATITLKXX 60
          ME +  + ++V EVL KLRPFLLRDGGD ELV+VE+G+ K+R LGAC  CPS+TITLK  
Sbjct: 1  METSTEMHEQVKEVLDKLRPFLLRDGGDVELVDVEDGIVKVRLLGACGSCPSSTITLKAG 60

Query: 61 XXXXXXXXXXXXKEVVQVF 79
                      KE+ QVF
Sbjct: 61 IERALLEEVPGVKEIEQVF 79


>C4L4W9.1 C4L4W9_EXISA Nitrogen-fixing NifU domain protein
          Length = 75

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 49/73 (67%)

Query: 7  LFDEVSEVLLKLRPFLLRDGGDAELVEVENGVAKLRFLGACNGCPSATITLKXXXXXXXX 66
          +FD+V EVL KLRPFLLRDGGD ELV+VE G+ KLR +GAC  CPS+TITLK        
Sbjct: 3  MFDQVQEVLDKLRPFLLRDGGDVELVDVEEGIVKLRLMGACGSCPSSTITLKAGIERALI 62

Query: 67 XXXXXXKEVVQVF 79
                 EV QVF
Sbjct: 63 EEVPGIVEVEQVF 75


>Q5WDT7.1 Q5WDT7_BACSK Nitrogen fixation protein
          Length = 79

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 52/79 (65%)

Query: 1  MEENGVLFDEVSEVLLKLRPFLLRDGGDAELVEVENGVAKLRFLGACNGCPSATITLKXX 60
          ME +  L ++V EVL KLRPFLLRDGGD EL++VE+GV K+R LGAC  CPS+TITLK  
Sbjct: 1  METSTELMEQVQEVLDKLRPFLLRDGGDVELIDVEDGVVKVRLLGACGSCPSSTITLKAG 60

Query: 61 XXXXXXXXXXXXKEVVQVF 79
                       E+ QVF
Sbjct: 61 IERALLEEVPGITEIEQVF 79


>B1YKX1.1 B1YKX1_EXIS2 Nitrogen-fixing NifU domain protein
          Length = 75

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 46/52 (88%)

Query: 7  LFDEVSEVLLKLRPFLLRDGGDAELVEVENGVAKLRFLGACNGCPSATITLK 58
          +FD+V+EVL KLRPFLLRDGGD ELV+VE+G+ KLR +GAC  CPS+TITLK
Sbjct: 3  MFDQVNEVLEKLRPFLLRDGGDVELVDVEDGIVKLRLMGACGSCPSSTITLK 54


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.141    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 346,746,505
Number of extensions: 10016431
Number of successful extensions: 22692
Number of sequences better than 1.0e-05: 291
Number of HSP's gapped: 22938
Number of HSP's successfully gapped: 291
Length of query: 79
Length of database: 3,060,696,203
Length adjustment: 50
Effective length of query: 29
Effective length of database: 2,589,645,453
Effective search space: 75099718137
Effective search space used: 75099718137
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)