BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0427.0012.p (455 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBK1.1 B3KBK1_9BACI FeS assembly protein SufB 761 0.0 B1DKG6.1 B1DKG6_9BACL FeS assembly protein SufB 735 0.0 Q9K7A2.1 Q9K7A2_BACHD BH3467 protein 689 0.0 Q5WDQ2.1 Q5WDQ2_BACSK ABC transporter 680 0.0 A9VNY1.1 A9VNY1_BACWK FeS assembly protein SufB 672 0.0 >B3KBK1.1 B3KBK1_9BACI FeS assembly protein SufB Length = 465 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/430 (81%), Positives = 393/430 (91%) Query: 1 MAKNAPDMGDYKYGFRDGHQSVFQSGKGLTPEIVREISRIKEEPEWMLEFRLKALEQFYK 60 MAK AP+M +YKYGFRD H+++FQ+GKGLT E+V EIS+IK EPEWMLEFRLKALEQF K Sbjct: 1 MAKKAPEMEEYKYGFRDEHKAIFQTGKGLTREVVTEISKIKNEPEWMLEFRLKALEQFEK 60 Query: 61 MPMPRWGADLDGLNLEDIQYYVRPSEKQGKTWEEVPAEIKATFDKLGIPEAEQKFLAGVS 120 MPMPRWG DLD L+ DIQYYVRPSEKQGKTWEEVPAEIK TFDKLGIPEAEQKFLAGVS Sbjct: 61 MPMPRWGGDLDELDFNDIQYYVRPSEKQGKTWEEVPAEIKETFDKLGIPEAEQKFLAGVS 120 Query: 121 AQYESEVVYHSMRQDLEEQGVVFLDTDTALKQYPELFKEYFGTIIPPADNKFAALNSAVW 180 AQYESEVVYH+M++DLE+QGV+F+DTDTAL+++PE+ KEYF T++PP DNKFAALNSAVW Sbjct: 121 AQYESEVVYHNMQKDLEDQGVIFMDTDTALREHPEILKEYFATVVPPTDNKFAALNSAVW 180 Query: 181 SGGSFVYVPKGVQCEVPIQGYFRINSENMGQFERTLIIADEGSFIHYVEGCTAPIYSTSS 240 SGGSF+YVPKGVQCE+P+Q YFRINSENMGQFERTLIIADE SF+HYVEGCTAPIYST+S Sbjct: 181 SGGSFIYVPKGVQCEIPLQAYFRINSENMGQFERTLIIADEDSFVHYVEGCTAPIYSTNS 240 Query: 241 LHSGVIEIICRKDSRVRYTTIQNWAPNIYNLVTQRAVAEENATMEWVDGNIGSKVTMKYP 300 LHS V+EIIC+K++RVRYTTIQNWAPNIYNLVT+RAVAEENATMEWVDGNIGSK+TMKYP Sbjct: 241 LHSAVVEIICKKNARVRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYP 300 Query: 301 AVLLKGRGAKGSILSIAVAGKEQHQDAGAKVIHLAPDXXXXXXXXXXXXQGGKVSYRGLS 360 AV+LKGRGAKG +LSIAVAGK QHQDAGAK++HLAPD GGKV+YRGL+ Sbjct: 301 AVVLKGRGAKGMVLSIAVAGKGQHQDAGAKMLHLAPDTTSTIVSKSISKHGGKVTYRGLA 360 Query: 361 SFSRNSAGSKSNIKCDTLILDNLSTSDTVPYNEIKNDQITLEHEATVSKVSEEQLFYLMS 420 SF RN+ G+K+NIKCDTLILDN STSDT+PYNEIKND ITLEHEATVSKVSE+QLFYLMS Sbjct: 361 SFGRNAEGAKANIKCDTLILDNESTSDTIPYNEIKNDNITLEHEATVSKVSEDQLFYLMS 420 Query: 421 RGLTEEEATQ 430 RGLTE+EATQ Sbjct: 421 RGLTEDEATQ 430 >B1DKG6.1 B1DKG6_9BACL FeS assembly protein SufB Length = 465 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/430 (79%), Positives = 380/430 (88%) Query: 1 MAKNAPDMGDYKYGFRDGHQSVFQSGKGLTPEIVREISRIKEEPEWMLEFRLKALEQFYK 60 MA P+M DYKYGFRD H++VFQSGKGLT EIVR IS +K EP+WMLEFRLK+LEQF K Sbjct: 1 MAGTMPEMEDYKYGFRDEHKAVFQSGKGLTEEIVRTISEMKNEPQWMLEFRLKSLEQFNK 60 Query: 61 MPMPRWGADLDGLNLEDIQYYVRPSEKQGKTWEEVPAEIKATFDKLGIPEAEQKFLAGVS 120 MPMP WG D+ L+ DIQYYV+PSEKQGKTWEEVP EIK TFDKLGIPEAEQKFLAGVS Sbjct: 61 MPMPNWGGDMADLDFNDIQYYVKPSEKQGKTWEEVPQEIKETFDKLGIPEAEQKFLAGVS 120 Query: 121 AQYESEVVYHSMRQDLEEQGVVFLDTDTALKQYPELFKEYFGTIIPPADNKFAALNSAVW 180 AQYESEVVYHSM++DLE+QGV+F D DTAL++YP+L KEYF TIIP DNKFAALNSAVW Sbjct: 121 AQYESEVVYHSMQEDLEKQGVIFTDMDTALREYPDLVKEYFSTIIPRTDNKFAALNSAVW 180 Query: 181 SGGSFVYVPKGVQCEVPIQGYFRINSENMGQFERTLIIADEGSFIHYVEGCTAPIYSTSS 240 SGGSF+YVPKGV+CEVP+Q YFRINSENMGQFERTLIIADE SF+HYVEGCTAPIYST+S Sbjct: 181 SGGSFIYVPKGVKCEVPLQAYFRINSENMGQFERTLIIADEDSFVHYVEGCTAPIYSTNS 240 Query: 241 LHSGVIEIICRKDSRVRYTTIQNWAPNIYNLVTQRAVAEENATMEWVDGNIGSKVTMKYP 300 LHS V+EI+ +K++R RYTTIQNWAPNIYNLVT+RAVAEENATMEWVDGNIGSK+TMKYP Sbjct: 241 LHSAVVEILVKKNARCRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYP 300 Query: 301 AVLLKGRGAKGSILSIAVAGKEQHQDAGAKVIHLAPDXXXXXXXXXXXXQGGKVSYRGLS 360 AV+LKGRGAKG +LSIAVAGK QHQDAGAK++HLAPD GGKV+YRGL+ Sbjct: 301 AVILKGRGAKGMVLSIAVAGKGQHQDAGAKMLHLAPDTTSTIVSKSISKHGGKVTYRGLA 360 Query: 361 SFSRNSAGSKSNIKCDTLILDNLSTSDTVPYNEIKNDQITLEHEATVSKVSEEQLFYLMS 420 SF RNS GSKSNIKCDTLILDN STSDT+PYNEI ND ITLEHEATVSKVSE+QLFYLMS Sbjct: 361 SFGRNSEGSKSNIKCDTLILDNESTSDTIPYNEIMNDNITLEHEATVSKVSEDQLFYLMS 420 Query: 421 RGLTEEEATQ 430 RGL+E EATQ Sbjct: 421 RGLSEAEATQ 430 >Q9K7A2.1 Q9K7A2_BACHD BH3467 protein Length = 465 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/430 (73%), Positives = 375/430 (87%) Query: 1 MAKNAPDMGDYKYGFRDGHQSVFQSGKGLTPEIVREISRIKEEPEWMLEFRLKALEQFYK 60 MAK P++G+YKYGF D S+F+S +GLT EIV EISR+K+EP+WML+FRLK+LEQFYK Sbjct: 1 MAKKMPEIGEYKYGFSDRDVSIFRSKRGLTREIVEEISRMKQEPQWMLDFRLKSLEQFYK 60 Query: 61 MPMPRWGADLDGLNLEDIQYYVRPSEKQGKTWEEVPAEIKATFDKLGIPEAEQKFLAGVS 120 MPMP+WG DL L+ +DI YYV+PSEK ++W+EVP EIK TFDKLGIPEAEQK+LAGVS Sbjct: 61 MPMPQWGGDLTELDFDDITYYVKPSEKSERSWDEVPEEIKNTFDKLGIPEAEQKYLAGVS 120 Query: 121 AQYESEVVYHSMRQDLEEQGVVFLDTDTALKQYPELFKEYFGTIIPPADNKFAALNSAVW 180 AQYESEVVYH+M++DLEE G++F DTD+ALK+ ++FKEYFGTIIPP DNKFAALNSAVW Sbjct: 121 AQYESEVVYHNMKEDLEELGIIFKDTDSALKENEDIFKEYFGTIIPPTDNKFAALNSAVW 180 Query: 181 SGGSFVYVPKGVQCEVPIQGYFRINSENMGQFERTLIIADEGSFIHYVEGCTAPIYSTSS 240 SGGSF+YVPKGV+ E P+Q YFRINSENMGQFERTLIIADE S +HYVEGCTAP+Y+T+S Sbjct: 181 SGGSFIYVPKGVKTETPLQAYFRINSENMGQFERTLIIADEDSSVHYVEGCTAPVYTTNS 240 Query: 241 LHSGVIEIICRKDSRVRYTTIQNWAPNIYNLVTQRAVAEENATMEWVDGNIGSKVTMKYP 300 LHS V+EII +KD+ RYTTIQNWAPN+YNLVT+RAVA ENATMEW+DGNIGSK+TMKYP Sbjct: 241 LHSAVVEIIVKKDAYCRYTTIQNWAPNVYNLVTKRAVAYENATMEWIDGNIGSKLTMKYP 300 Query: 301 AVLLKGRGAKGSILSIAVAGKEQHQDAGAKVIHLAPDXXXXXXXXXXXXQGGKVSYRGLS 360 AV++KG GAKG+ILSIA+AGK QHQDAGAKV+HLAP+ QGGKVSYRG++ Sbjct: 301 AVIMKGEGAKGTILSIAIAGKGQHQDAGAKVLHLAPNCSSTIVSKSISKQGGKVSYRGIA 360 Query: 361 SFSRNSAGSKSNIKCDTLILDNLSTSDTVPYNEIKNDQITLEHEATVSKVSEEQLFYLMS 420 F R S GSKS I+CDTLI+DN STSDT+PYNEI N+ ITLEHEATVSKVSE+QLFYLMS Sbjct: 361 HFGRKSQGSKSKIECDTLIMDNESTSDTIPYNEILNNDITLEHEATVSKVSEDQLFYLMS 420 Query: 421 RGLTEEEATQ 430 RG++EEEAT+ Sbjct: 421 RGISEEEATE 430 >Q5WDQ2.1 Q5WDQ2_BACSK ABC transporter Length = 465 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/430 (72%), Positives = 371/430 (86%) Query: 1 MAKNAPDMGDYKYGFRDGHQSVFQSGKGLTPEIVREISRIKEEPEWMLEFRLKALEQFYK 60 MAKN PD+G+YKYGF D S+F+SG+GLT EIV EISR+KEEP+WML+FRLK+LEQFYK Sbjct: 1 MAKNMPDIGEYKYGFSDRDVSIFRSGRGLTKEIVEEISRMKEEPQWMLDFRLKSLEQFYK 60 Query: 61 MPMPRWGADLDGLNLEDIQYYVRPSEKQGKTWEEVPAEIKATFDKLGIPEAEQKFLAGVS 120 MPMP+WG DL LN +DI YYV+ S+K ++W+EVP EIK TFDKLGIPEAEQK+LAGVS Sbjct: 61 MPMPQWGGDLSELNFDDITYYVKASDKTERSWDEVPEEIKNTFDKLGIPEAEQKYLAGVS 120 Query: 121 AQYESEVVYHSMRQDLEEQGVVFLDTDTALKQYPELFKEYFGTIIPPADNKFAALNSAVW 180 AQYESEVVYH+M++DLE GVVF DTD+ALK+ ++FKEYF T+IP ADNKFAALNSAVW Sbjct: 121 AQYESEVVYHNMKEDLESLGVVFKDTDSALKENEDIFKEYFATVIPAADNKFAALNSAVW 180 Query: 181 SGGSFVYVPKGVQCEVPIQGYFRINSENMGQFERTLIIADEGSFIHYVEGCTAPIYSTSS 240 SGGSF+YVPKGV+ + P+Q YFRINSENMGQFERTLIIADE S +HYVEGCTAP+Y+T+S Sbjct: 181 SGGSFIYVPKGVKVDTPLQAYFRINSENMGQFERTLIIADEDSSVHYVEGCTAPVYTTNS 240 Query: 241 LHSGVIEIICRKDSRVRYTTIQNWAPNIYNLVTQRAVAEENATMEWVDGNIGSKVTMKYP 300 LHS V+EII + ++ RYTTIQNWAPN+YNLVT+RAVA++ ATMEWVDGNIGSK+TMKYP Sbjct: 241 LHSAVVEIIVKDNAYCRYTTIQNWAPNVYNLVTKRAVADKGATMEWVDGNIGSKLTMKYP 300 Query: 301 AVLLKGRGAKGSILSIAVAGKEQHQDAGAKVIHLAPDXXXXXXXXXXXXQGGKVSYRGLS 360 AV+++G GAKG++LSIA+AGK QHQDAGAKV HLAP+ QGGKV+YRG+ Sbjct: 301 AVIMRGEGAKGTVLSIAIAGKGQHQDAGAKVTHLAPNCSSTIVSKSISKQGGKVTYRGIC 360 Query: 361 SFSRNSAGSKSNIKCDTLILDNLSTSDTVPYNEIKNDQITLEHEATVSKVSEEQLFYLMS 420 F R S GSKS I+CDTLI+DN STSDT+PYNEI N+ ITLEHEATVSKVSE+QLFYLMS Sbjct: 361 HFGRKSDGSKSKIECDTLIMDNQSTSDTIPYNEILNNNITLEHEATVSKVSEDQLFYLMS 420 Query: 421 RGLTEEEATQ 430 RG++EEEAT+ Sbjct: 421 RGVSEEEATE 430 >A9VNY1.1 A9VNY1_BACWK FeS assembly protein SufB Length = 465 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 303/430 (70%), Positives = 372/430 (86%) Query: 1 MAKNAPDMGDYKYGFRDGHQSVFQSGKGLTPEIVREISRIKEEPEWMLEFRLKALEQFYK 60 MAK PD+GDYKYGF+D S+F++G+GLT EIV EISR+KEEP+WML+FRLK+L++FY+ Sbjct: 1 MAKQLPDIGDYKYGFKDKDVSIFRAGRGLTKEIVEEISRMKEEPQWMLDFRLKSLDKFYE 60 Query: 61 MPMPRWGADLDGLNLEDIQYYVRPSEKQGKTWEEVPAEIKATFDKLGIPEAEQKFLAGVS 120 MPMP+WG DL+ L+ ++I YYV+PSEK K+W+EVP EIKATFDKLGIPEAEQK+LAGVS Sbjct: 61 MPMPQWGGDLNDLDFDEITYYVKPSEKSEKSWDEVPEEIKATFDKLGIPEAEQKYLAGVS 120 Query: 121 AQYESEVVYHSMRQDLEEQGVVFLDTDTALKQYPELFKEYFGTIIPPADNKFAALNSAVW 180 AQYESEVVYH+M++DLE+ GVVF DTD+ALK+ ++F+E+FG +IPP DNKF+ALNSAVW Sbjct: 121 AQYESEVVYHNMKEDLEDLGVVFKDTDSALKENEDIFREHFGKVIPPTDNKFSALNSAVW 180 Query: 181 SGGSFVYVPKGVQCEVPIQGYFRINSENMGQFERTLIIADEGSFIHYVEGCTAPIYSTSS 240 SGGSF+YVPKG++ + P+Q YFRINSENMGQFERTLII DEG+ +HYVEGCTAP+Y+T+S Sbjct: 181 SGGSFIYVPKGIKVDTPLQAYFRINSENMGQFERTLIIVDEGAHVHYVEGCTAPVYTTNS 240 Query: 241 LHSGVIEIICRKDSRVRYTTIQNWAPNIYNLVTQRAVAEENATMEWVDGNIGSKVTMKYP 300 LHS V+EII +KD+ RYTTIQNWA N+YNLVT+RAV EENATMEW+DGNIGSK+TMKYP Sbjct: 241 LHSAVVEIIIKKDAYCRYTTIQNWANNVYNLVTKRAVCEENATMEWIDGNIGSKLTMKYP 300 Query: 301 AVLLKGRGAKGSILSIAVAGKEQHQDAGAKVIHLAPDXXXXXXXXXXXXQGGKVSYRGLS 360 AV+LKG GA+G LSIA+AGK QHQDAGAK+IHLAP+ GGKV+YRG+ Sbjct: 301 AVILKGEGARGLTLSIAIAGKGQHQDAGAKMIHLAPNTSSTIVSKSIAKHGGKVTYRGIV 360 Query: 361 SFSRNSAGSKSNIKCDTLILDNLSTSDTVPYNEIKNDQITLEHEATVSKVSEEQLFYLMS 420 F + S+SNI+CDTLI+DN STSDT+PYNEIKND ++LEHEA VSKVSEEQLFYLMS Sbjct: 361 QFGPKAKNSRSNIECDTLIMDNQSTSDTIPYNEIKNDYVSLEHEAKVSKVSEEQLFYLMS 420 Query: 421 RGLTEEEATQ 430 RG++E+EAT+ Sbjct: 421 RGISEQEATE 430 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,600,491,448 Number of extensions: 108587737 Number of successful extensions: 247278 Number of sequences better than 1.0e-05: 1903 Number of HSP's gapped: 243536 Number of HSP's successfully gapped: 1915 Length of query: 455 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 316 Effective length of database: 1,751,175,118 Effective search space: 553371337288 Effective search space used: 553371337288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)