BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0427.0011.p (440 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBJ8.1 B3KBJ8_9BACI FeS assembly protein SufD 572 e-161 B1DKG9.1 B1DKG9_9BACL FeS assembly protein SufD 466 e-129 C0ZL07.1 C0ZL07_BREBN Iron-sulfur cluster assembly protein SufD 426 e-117 Q9K799.1 Q9K799_BACHD BH3470 protein 392 e-107 A6CT46.1 A6CT46_9BACI Putative uncharacterized protein 392 e-107 >B3KBJ8.1 B3KBJ8_9BACI FeS assembly protein SufD Length = 434 Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust. Identities = 279/431 (64%), Positives = 344/431 (79%) Query: 4 QNRVSVNADDLCAWSRAKAEPQWLLEQRLQALKQAENLKLPEVEKMKLERWDIYEHGDYK 63 Q + VNA+ L A S +K EP WL + RL AL+ A L+LP++EK ++ERW+I+ +G+YK Sbjct: 4 QTILPVNAEALKALSESKQEPAWLTDSRLAALELAGQLELPKLEKQRIERWNIHSYGEYK 63 Query: 64 AENMWPGLQEAHEAVHSLVNFPVEGGLIVQHNSDVVYSELSADLAAQGVILTDLHTAARE 123 N L E E V LV EGGL++Q NS VY+ L+ +LAA+GVI TDL TA +E Sbjct: 64 ESNKLASLDELPEHVAKLVEGSREGGLVIQRNSGTVYASLAPELAAKGVIFTDLETAVKE 123 Query: 124 HGELVQRYLGQAVKPEEHWLSAVHSAVWSGGVFLYIPDGVEVEVPLQAIFYSSMSGARFA 183 H +LV+ YL QA+K +EH ++A+H+AVW+GGVFLY+P VE++VPLQA+ + + A FA Sbjct: 124 HADLVKPYLHQALKSDEHAMAALHAAVWNGGVFLYVPKNVEIDVPLQAVMLTDDAEATFA 183 Query: 184 PHILIVAGNNSKISYVDNCISGREDIKVLHNGVLEVFAGAGSKVQVASVHQLAAPTTDFT 243 PH+L+VA NS+I+YVDN +S V HNGV+EVFA G+KV+ ASVHQLA TD T Sbjct: 184 PHVLVVAEANSQITYVDNYVSDSLAAAVTHNGVVEVFAKNGAKVRYASVHQLAGEATDVT 243 Query: 244 QRRAVVLADGAVEWIIGEMNNGYTASDTKTLLQGNGSTSDAKVIAVGSGSQKLSYTTQAQ 303 RRAV+ D ++EWI+GEMN+G TASDT ++L+GNGSTSDAK+IAVGSGSQK++YTTQA+ Sbjct: 244 FRRAVLDNDASIEWIVGEMNDGDTASDTMSILKGNGSTSDAKIIAVGSGSQKINYTTQAK 303 Query: 304 HFGRSSVSQMITRAVMREEATAIINGITKIEKGATHCDGQQTERILMLSPKARGDANPIL 363 HFG+SS SQMITRAVMREEA AIINGITKIEKGAT DGQQTER+LMLSPKARGDANPIL Sbjct: 304 HFGKSSASQMITRAVMREEAQAIINGITKIEKGATKADGQQTERVLMLSPKARGDANPIL 363 Query: 364 LIDEDDVTAGHAASVGQVNEEQIYYLMSRGISRNEAEYLVIFGFLAPVISEIPLEGVRSR 423 LIDEDDVTAGHAASVGQVN EQIYYLMSRGISR+ AE L+I+GFLAPV+SEIPLEG+R + Sbjct: 364 LIDEDDVTAGHAASVGQVNREQIYYLMSRGISRSVAESLIIYGFLAPVVSEIPLEGLRDQ 423 Query: 424 LQDLVESKLGR 434 LQ LVE KLG+ Sbjct: 424 LQGLVERKLGQ 434 >B1DKG9.1 B1DKG9_9BACL FeS assembly protein SufD Length = 395 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 229/394 (58%), Positives = 299/394 (75%), Gaps = 3/394 (0%) Query: 41 LKLPEVEKMKLERWDIYEHGDYKAENMWPGLQEAHEAVHSLVNFPVEGGLIVQHNSDVVY 100 ++ P+ EKM+++RW++ G Y+ + E E V LV E ++VQHNS V Sbjct: 1 MEWPKPEKMRIDRWNLTAVGAYEQGKAVGSVAELPEVVRELVAEGTEN-IVVQHNSSAVL 59 Query: 101 SELSADLAAQGVILTDLHTAAREHGELVQRYLGQAVKPEEHWLSAVHSAVWSGGVFLYIP 160 +LSA+LAA+GVILTDL TA +EH +LV+ YL QAV E+ L+A+H+A+W+GGVF+Y+P Sbjct: 60 KQLSAELAAKGVILTDLETACKEHADLVKPYLFQAVSAGENKLTAMHAALWNGGVFVYVP 119 Query: 161 DGVEVEVPLQAIFYSSMSGARFAPHILIVAGNNSKISYVDNCIS--GREDIKVLHNGVLE 218 VEVE+PLQA+ +++ A FAPHILIVA +NS ++YVD +S G D +H+ ++E Sbjct: 120 KNVEVELPLQAVLFNNKPDAAFAPHILIVAESNSSVTYVDYVVSEPGSIDAPFVHHSIVE 179 Query: 219 VFAGAGSKVQVASVHQLAAPTTDFTQRRAVVLADGAVEWIIGEMNNGYTASDTKTLLQGN 278 VF G+ V+ S+H +A D T RRAV+ DG +EW+IG++N+GYT SDT ++L+GN Sbjct: 180 VFVKPGAHVRFGSIHHMADNGVDMTLRRAVIENDGQMEWVIGDLNDGYTVSDTVSVLKGN 239 Query: 279 GSTSDAKVIAVGSGSQKLSYTTQAQHFGRSSVSQMITRAVMREEATAIINGITKIEKGAT 338 GS SDAKVI++G QK+S TTQA HFGRSS S M+TRAVMR+ ATAIINGITKIEKGAT Sbjct: 240 GSNSDAKVISIGGSDQKMSLTTQATHFGRSSESNMVTRAVMRDNATAIINGITKIEKGAT 299 Query: 339 HCDGQQTERILMLSPKARGDANPILLIDEDDVTAGHAASVGQVNEEQIYYLMSRGISRNE 398 +G QTE++LMLSPKARGDANPILLIDEDDV AGHAASVGQVN EQ+YYLMSRGIS+ + Sbjct: 300 KANGVQTEKVLMLSPKARGDANPILLIDEDDVKAGHAASVGQVNPEQVYYLMSRGISKQD 359 Query: 399 AEYLVIFGFLAPVISEIPLEGVRSRLQDLVESKL 432 AE L+I+GFLAPV+SEIP++ VR +LQ L+E KL Sbjct: 360 AERLIIYGFLAPVVSEIPIDAVREQLQRLLERKL 393 >C0ZL07.1 C0ZL07_BREBN Iron-sulfur cluster assembly protein SufD Length = 432 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 212/433 (48%), Positives = 298/433 (68%), Gaps = 3/433 (0%) Query: 1 VEVQNRVSVNADDLCAWSRAKAEPQWLLEQRLQALKQAENLKLPEVEKMKLERWDIYEHG 60 V+VQ R +++ + +S+A EP W LE+RL LK A L LP +EK K+++W+ + Sbjct: 3 VDVQLRF--DSEAITQYSKANQEPAWFLEKRLAGLKAAGELALPALEKTKIDKWNTVDFD 60 Query: 61 DYKAENMWPGLQEAHEAVHSLVNFPVEGGLIVQHNSDVVYSELSADLAAQGVILTDLHTA 120 ++ E + V + ++ L+VQ N+ V+ +S +L AQGVI T A Sbjct: 61 PFQTTTKVAAANELSDLVKAQIDVDSVKNLLVQKNASTVFQAVSDELKAQGVIFTTFADA 120 Query: 121 AREHGELVQRYLGQAVKPEEHWLSAVHSAVWSGGVFLYIPDGVEVEVPLQAIFYSSMSGA 180 + HG+LVQ+YL + +EH L+A+H+AV +GGVFLY+P VEV+VPLQA++ + A Sbjct: 121 LQTHGDLVQKYLLNVIALDEHKLTALHTAVVNGGVFLYVPKNVEVDVPLQAVYEIAGDNA 180 Query: 181 RFAPHILIVAGNNSKISYVDNCISGREDIKVLHNGVLEVFAGAGSKVQVASVHQLAAPTT 240 APH+LIVA NSK++YVD +SG E ++ N ++EV+ GAG+ VQVASV L+ Sbjct: 181 LLAPHVLIVAEANSKVTYVDTYVSG-EGKSMVANSLVEVYVGAGASVQVASVRSLSVDVH 239 Query: 241 DFTQRRAVVLADGAVEWIIGEMNNGYTASDTKTLLQGNGSTSDAKVIAVGSGSQKLSYTT 300 D++ RRA V DG +EWI+GEMN+G T ++ T+L+G S ++ K I+VG+GSQ+ + T+ Sbjct: 240 DYSFRRATVERDGKMEWILGEMNDGNTVANNTTILKGTASIAETKSISVGTGSQRQNLTS 299 Query: 301 QAQHFGRSSVSQMITRAVMREEATAIINGITKIEKGATHCDGQQTERILMLSPKARGDAN 360 Q QH G + S M+++AVM +EA +I+NGITKIEKGA +G Q E ILMLS K+RGDAN Sbjct: 300 QVQHIGTHTESDMVSKAVMTDEAVSILNGITKIEKGAEKANGVQAENILMLSDKSRGDAN 359 Query: 361 PILLIDEDDVTAGHAASVGQVNEEQIYYLMSRGISRNEAEYLVIFGFLAPVISEIPLEGV 420 PILLIDEDDV AGHAASVG+ +EE I+YLMSRGISR AE L+I GFL PV++EIP+E V Sbjct: 360 PILLIDEDDVKAGHAASVGRFSEESIFYLMSRGISRQGAERLIILGFLEPVVAEIPVEEV 419 Query: 421 RSRLQDLVESKLG 433 ++RL+ +E KLG Sbjct: 420 KNRLRQALERKLG 432 >Q9K799.1 Q9K799_BACHD BH3470 protein Length = 435 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/435 (47%), Positives = 298/435 (68%), Gaps = 8/435 (1%) Query: 3 VQNRVSVNADDLCAWSRAKAEPQWLLEQRLQALKQAENLKLPEVEKMKLERWDIYEHGDY 62 V+ +++++ + + ++S A+ EPQW + RL+ + E L+LP+ +K K+ W+ + + D+ Sbjct: 3 VETKLTIDKEYVQSFSDARNEPQWFKDIRLKGFELVETLELPKPDKTKITSWN-FTNFDH 61 Query: 63 KAENMWP--GLQEAHEAVHSLVNFPVEG-GLIVQHNSDVVYSELSADLAAQGVILTDLHT 119 K + P + E + V L+ + L+VQ ++ VVYS+L L A+GVI TDL T Sbjct: 62 KLPEVSPVASIDELRDEVKGLIGEASDTQNLLVQRDATVVYSKLDEALKAKGVIFTDLLT 121 Query: 120 AAREHGELVQRY-LGQAVKPEEHWLSAVHSAVWSGGVFLYIPDGVEVEVPLQAIFYSSMS 178 A +EHG+LV++Y + AVK +E+ L+A+H+A+ +GG F+Y+P VE+EVPLQ++F+ Sbjct: 122 AVKEHGDLVEKYYMKDAVKVDENRLTALHAALVNGGTFIYVPRNVEIEVPLQSVFWFDTE 181 Query: 179 GARFAPHILIVAGNNSKISYVDNCIS-GREDIKVLHNGVLEVFAGAGSKVQVASVHQLAA 237 A H++IVA +NS I+YV+N S G E+ + N V+EVFAGA +KV +V LAA Sbjct: 182 KAGLFNHVIIVAEDNSSITYVENYASFGSEE--AVANIVVEVFAGANAKVSFGAVDNLAA 239 Query: 238 PTTDFTQRRAVVLADGAVEWIIGEMNNGYTASDTKTLLQGNGSTSDAKVIAVGSGSQKLS 297 T + RRA V D VEW +G+MN+G T S+ T L G+ S +D K ++VG G QK + Sbjct: 240 GVTTYVVRRAHVGRDSRVEWALGQMNDGNTVSENTTHLLGDNSWADTKTVSVGRGEQKQN 299 Query: 298 YTTQAQHFGRSSVSQMITRAVMREEATAIINGITKIEKGATHCDGQQTERILMLSPKARG 357 +TTQ H G+ S ++ VMRE AT+I NGI+KIE GAT G+QTER+LMLS KARG Sbjct: 300 FTTQIFHHGKHSEGYILKHGVMREAATSIFNGISKIEHGATKSHGEQTERVLMLSEKARG 359 Query: 358 DANPILLIDEDDVTAGHAASVGQVNEEQIYYLMSRGISRNEAEYLVIFGFLAPVISEIPL 417 DANPILLIDEDDVTAGHAASVG+++ Q++YLMSRGISR EAE LVI GFLAPV+ ++P+ Sbjct: 360 DANPILLIDEDDVTAGHAASVGKIDPIQMFYLMSRGISRAEAERLVIHGFLAPVVGQLPI 419 Query: 418 EGVRSRLQDLVESKL 432 E V+ RL + +E K+ Sbjct: 420 ESVKERLVEAIERKV 434 >A6CT46.1 A6CT46_9BACI Putative uncharacterized protein Length = 436 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 196/433 (45%), Positives = 290/433 (66%), Gaps = 3/433 (0%) Query: 3 VQNRVSVNADDLCAWSRAKAEPQWLLEQRLQALKQAENLKLPEVEKMKLERWDIYEHGDY 62 V+ ++ V D L ++S+ + EP+W + R+QAL +A L+LP+ +K K+ +W+ E + Sbjct: 3 VETKLPVEKDYLDSFSKGQGEPEWFTDLRIQALTKAGELELPKPDKTKITKWNFTEFKQH 62 Query: 63 KAENM-WPGLQEAHEAVHSLVNF-PVEGGLIVQHNSDVVYSELSADLAAQGVILTDLHTA 120 E+ + L E EA +L++ E L VQ N+ Y LS +L +GVI TD+ TA Sbjct: 63 TVESKPYQNLSELPEAAKALIDMDSTENNLYVQRNNTPAYLTLSQELKDKGVIFTDILTA 122 Query: 121 AREHGELVQRYLGQ-AVKPEEHWLSAVHSAVWSGGVFLYIPDGVEVEVPLQAIFYSSMSG 179 +EHG+LVQ+Y Q VK +EH L+A+H+A+ +GG FLY+P VEV P+QA++ + Sbjct: 123 VKEHGDLVQKYFMQEGVKVDEHKLTALHAALVNGGAFLYVPKNVEVAQPIQAVYIQDNAD 182 Query: 180 ARFAPHILIVAGNNSKISYVDNCISGREDIKVLHNGVLEVFAGAGSKVQVASVHQLAAPT 239 H+L+VA +NS ++YV+N IS + + ++N V EVFA +KV +V LA+ Sbjct: 183 TTLFNHVLVVADDNSSVTYVENYISTTDVEQGIYNIVTEVFANNNAKVTYGAVDNLASGI 242 Query: 240 TDFTQRRAVVLADGAVEWIIGEMNNGYTASDTKTLLQGNGSTSDAKVIAVGSGSQKLSYT 299 T + RR DG ++W +G MN+G T S+ T L G+GS +D K + VG G QK ++T Sbjct: 243 TTYVNRRGTAARDGRIDWALGLMNDGDTISENVTNLMGDGSYADTKTVVVGRGKQKQNFT 302 Query: 300 TQAQHFGRSSVSQMITRAVMREEATAIINGITKIEKGATHCDGQQTERILMLSPKARGDA 359 T+ HFG++S ++ VM++EA++I NGI KIE GA+ + +Q R+LMLS KARGDA Sbjct: 303 TKVVHFGKNSEGYILKHGVMKDEASSIFNGIGKIEHGASKSNAEQESRVLMLSEKARGDA 362 Query: 360 NPILLIDEDDVTAGHAASVGQVNEEQIYYLMSRGISRNEAEYLVIFGFLAPVISEIPLEG 419 NPILLIDEDDVTAGHAASVG+V+ Q+YYLMSRGI ++EAE LVI GFLAPV++++P+EG Sbjct: 363 NPILLIDEDDVTAGHAASVGRVDPLQLYYLMSRGIPQHEAERLVIHGFLAPVVNQLPIEG 422 Query: 420 VRSRLQDLVESKL 432 V+ +L +++E K+ Sbjct: 423 VKKQLTEVIERKV 435 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.131 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,535,108,854 Number of extensions: 103933339 Number of successful extensions: 290955 Number of sequences better than 1.0e-05: 2203 Number of HSP's gapped: 287505 Number of HSP's successfully gapped: 2217 Length of query: 440 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 301 Effective length of database: 1,751,175,118 Effective search space: 527103710518 Effective search space used: 527103710518 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)