BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0427.0010.p (269 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBJ7.1 B3KBJ7_9BACI FeS assembly ATPase SufC 380 e-104 B1DKH0.1 B1DKH0_9BACL FeS assembly ATPase SufC 368 e-100 C0ZL08.1 C0ZL08_BREBN ABC transporter ATP-binding protein SufC 358 3e-97 Q5KVK6.1 Q5KVK6_GEOKA ABC transporter (ATP-binding protein) 354 4e-96 C3J5F5.1 C3J5F5_9BACI FeS assembly ATPase SufC 354 4e-96 >B3KBJ7.1 B3KBJ7_9BACI FeS assembly ATPase SufC Length = 260 Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/229 (80%), Positives = 200/229 (87%), Gaps = 3/229 (1%) Query: 41 IMGPNGTGKSTLASALMGHPKYEVTNGRVTXXXXXXXXXXXXXRARAGLFLAMQYPSEIA 100 IMGPNGTGKSTLASALMGHPKYEVT G+V RARAGLFLAMQYPSEIA Sbjct: 35 IMGPNGTGKSTLASALMGHPKYEVTEGKVFLDDEDVLEMEVDERARAGLFLAMQYPSEIA 94 Query: 101 GVTNSDFLRSAVNARRGEGNEVSLIRFIRQMESKMKGLEMNPEFSHRXXXXXXEGFSGGE 160 GVTNSDFLRS++NARRGEGNE+SLI+FIRQME KMK LEMNPEF+HR EGFSGGE Sbjct: 95 GVTNSDFLRSSINARRGEGNEISLIKFIRQMEGKMKELEMNPEFAHRYLN---EGFSGGE 151 Query: 161 KKRNEILQMMMLEPKFVILDEVDSGLDIDALRIVANGVNELRSPDRGFLIITHYQRLLNY 220 KKRNEILQMMML+PK V+LDE+DSGLDIDALRIVANGVN ++S +RGFLIITHYQRLLNY Sbjct: 152 KKRNEILQMMMLDPKIVVLDEIDSGLDIDALRIVANGVNAMKSEERGFLIITHYQRLLNY 211 Query: 221 ITPDFVHVMMQGRIVKSGGPELAHRLEADGYDWVKEELGITDEAAGQEA 269 ITPD+VHVMMQGRIVKSGGPELA RLEA+GYDW+KEELGITDE GQ+A Sbjct: 212 ITPDYVHVMMQGRIVKSGGPELAERLEAEGYDWIKEELGITDETVGQDA 260 >B1DKH0.1 B1DKH0_9BACL FeS assembly ATPase SufC Length = 259 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 181/227 (79%), Positives = 192/227 (84%), Gaps = 3/227 (1%) Query: 41 IMGPNGTGKSTLASALMGHPKYEVTNGRVTXXXXXXXXXXXXXRARAGLFLAMQYPSEIA 100 IMGPNGTGKSTLASALMGHPKYEVT G T RARAGLFLAMQYPSEI Sbjct: 35 IMGPNGTGKSTLASALMGHPKYEVTEGSATIDGEDLLEMSVDERARAGLFLAMQYPSEIP 94 Query: 101 GVTNSDFLRSAVNARRGEGNEVSLIRFIRQMESKMKGLEMNPEFSHRXXXXXXEGFSGGE 160 GVTNSDFLRSA+NARR EG+E+SLI+FIRQME KMK LEMNPEF+HR EGFSGGE Sbjct: 95 GVTNSDFLRSAINARREEGSEISLIKFIRQMEKKMKELEMNPEFAHRYLN---EGFSGGE 151 Query: 161 KKRNEILQMMMLEPKFVILDEVDSGLDIDALRIVANGVNELRSPDRGFLIITHYQRLLNY 220 KKRNEILQM MLEPK V+LDE+DSGLDIDAL+IV+NGVN +RS DRGFLIITHYQRLLNY Sbjct: 152 KKRNEILQMAMLEPKIVVLDEIDSGLDIDALKIVSNGVNAMRSEDRGFLIITHYQRLLNY 211 Query: 221 ITPDFVHVMMQGRIVKSGGPELAHRLEADGYDWVKEELGITDEAAGQ 267 ITPDFVHVMMQGRIVKSGGPELA RLE +GYDWVKEELGI DE GQ Sbjct: 212 ITPDFVHVMMQGRIVKSGGPELAERLENEGYDWVKEELGIVDETVGQ 258 >C0ZL08.1 C0ZL08_BREBN ABC transporter ATP-binding protein SufC Length = 262 Score = 358 bits (919), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 173/225 (76%), Positives = 189/225 (84%), Gaps = 3/225 (1%) Query: 41 IMGPNGTGKSTLASALMGHPKYEVTNGRVTXXXXXXXXXXXXXRARAGLFLAMQYPSEIA 100 IMGPNGTGKSTLAS LMGHPKYEVT+G V RARAGLFLAMQYPSEI+ Sbjct: 37 IMGPNGTGKSTLASTLMGHPKYEVTDGEVLINDEDLLEMAVDERARAGLFLAMQYPSEIS 96 Query: 101 GVTNSDFLRSAVNARRGEGNEVSLIRFIRQMESKMKGLEMNPEFSHRXXXXXXEGFSGGE 160 GVTNSDFLRSA+NARRGEGNE+SL++FIR+M+ KM LEM+ FSHR EGFSGGE Sbjct: 97 GVTNSDFLRSAINARRGEGNEISLMKFIREMDKKMNTLEMDESFSHRYLN---EGFSGGE 153 Query: 161 KKRNEILQMMMLEPKFVILDEVDSGLDIDALRIVANGVNELRSPDRGFLIITHYQRLLNY 220 KKRNEILQMM+LEP ILDE+DSGLDIDAL+IVANGVNE+RS DRGFLIITHYQRLLNY Sbjct: 154 KKRNEILQMMLLEPAICILDEIDSGLDIDALKIVANGVNEMRSADRGFLIITHYQRLLNY 213 Query: 221 ITPDFVHVMMQGRIVKSGGPELAHRLEADGYDWVKEELGITDEAA 265 + PDFVHVMMQGRIVKSGGPELA RLEA+GYDW+KEELGI DE Sbjct: 214 VKPDFVHVMMQGRIVKSGGPELAERLEAEGYDWIKEELGIEDETV 258 >Q5KVK6.1 Q5KVK6_GEOKA ABC transporter (ATP-binding protein) Length = 259 Score = 354 bits (909), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 171/229 (74%), Positives = 193/229 (84%), Gaps = 3/229 (1%) Query: 41 IMGPNGTGKSTLASALMGHPKYEVTNGRVTXXXXXXXXXXXXXRARAGLFLAMQYPSEIA 100 IMGPNGTGKSTLASA+MGHPKYEVT G VT RARAGLFLAMQYPSEI+ Sbjct: 34 IMGPNGTGKSTLASAIMGHPKYEVTEGSVTLDGQDVLEMEVDERARAGLFLAMQYPSEIS 93 Query: 101 GVTNSDFLRSAVNARRGEGNEVSLIRFIRQMESKMKGLEMNPEFSHRXXXXXXEGFSGGE 160 GVTN+DFLR+A+NAR GEGNE+SL++FIR+++ KM LEMNP+ +HR EGFSGGE Sbjct: 94 GVTNADFLRAAINARLGEGNEISLMKFIRKLDEKMAFLEMNPDMAHRYLN---EGFSGGE 150 Query: 161 KKRNEILQMMMLEPKFVILDEVDSGLDIDALRIVANGVNELRSPDRGFLIITHYQRLLNY 220 KKRNEILQ+MMLEPK ILDE+DSGLDIDAL+IVA GVNE+RS + G LIITHYQRLLNY Sbjct: 151 KKRNEILQLMMLEPKIAILDEIDSGLDIDALKIVAKGVNEMRSSEFGCLIITHYQRLLNY 210 Query: 221 ITPDFVHVMMQGRIVKSGGPELAHRLEADGYDWVKEELGITDEAAGQEA 269 ITPD+VHVMMQGRIVKSGGPELA RLEA+GYDW+K+ELGI DE GQEA Sbjct: 211 ITPDYVHVMMQGRIVKSGGPELAQRLEAEGYDWIKKELGIEDETVGQEA 259 >C3J5F5.1 C3J5F5_9BACI FeS assembly ATPase SufC Length = 259 Score = 354 bits (909), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 171/229 (74%), Positives = 193/229 (84%), Gaps = 3/229 (1%) Query: 41 IMGPNGTGKSTLASALMGHPKYEVTNGRVTXXXXXXXXXXXXXRARAGLFLAMQYPSEIA 100 IMGPNGTGKSTLASA+MGHPKYEVT G VT RARAGLFLAMQYPSEI+ Sbjct: 34 IMGPNGTGKSTLASAIMGHPKYEVTEGSVTLDGQDVLEMEVDERARAGLFLAMQYPSEIS 93 Query: 101 GVTNSDFLRSAVNARRGEGNEVSLIRFIRQMESKMKGLEMNPEFSHRXXXXXXEGFSGGE 160 GVTN+DFLR+A+NAR GEGNE+SL++FIR+++ KM LEMNP+ +HR EGFSGGE Sbjct: 94 GVTNADFLRAAINARLGEGNEISLMKFIRKLDEKMAFLEMNPDMAHRYLN---EGFSGGE 150 Query: 161 KKRNEILQMMMLEPKFVILDEVDSGLDIDALRIVANGVNELRSPDRGFLIITHYQRLLNY 220 KKRNEILQ+MMLEPK ILDE+DSGLDIDAL+IVA GVNE+RS + G LIITHYQRLLNY Sbjct: 151 KKRNEILQLMMLEPKIAILDEIDSGLDIDALKIVAKGVNEMRSSEFGCLIITHYQRLLNY 210 Query: 221 ITPDFVHVMMQGRIVKSGGPELAHRLEADGYDWVKEELGITDEAAGQEA 269 ITPD+VHVMMQGRIVKSGGPELA RLEA+GYDW+K+ELGI DE GQEA Sbjct: 211 ITPDYVHVMMQGRIVKSGGPELAQRLEAEGYDWIKKELGIEDETVGQEA 259 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,324,496,862 Number of extensions: 55524598 Number of successful extensions: 397499 Number of sequences better than 1.0e-05: 2277 Number of HSP's gapped: 409790 Number of HSP's successfully gapped: 2279 Length of query: 269 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 136 Effective length of database: 1,807,701,208 Effective search space: 245847364288 Effective search space used: 245847364288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)