BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0427.0009.p (225 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DLC9.1 B1DLC9_9BACL Regulatory protein GntR HTH 193 9e-48 Q5WKT9.1 Q5WKT9_BACSK GntR family transcriptional regulator 177 6e-43 B8GGM0.1 B8GGM0_METPE GntR domain protein 174 4e-42 B1KVD3.1 B1KVD3_CLOBM Transcriptional regulator, GntR family 171 3e-41 A7GF63.1 A7GF63_CLOBL Transcriptional regulator, GntR family 170 9e-41 >B1DLC9.1 B1DLC9_9BACL Regulatory protein GntR HTH Length = 245 Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 98/202 (48%), Positives = 136/202 (67%), Gaps = 3/202 (1%) Query: 18 AYQIQGKIENGEWRVGMRIPPEPELMEQLQVSRNTLREAIRALTYAGLLKTRQGDGTYVC 77 A QI+G I +G+W VG ++PPEPELMEQLQVSRNTLREAIRALT+AGLLKTRQGDGTYV Sbjct: 15 AEQIEGLIASGQWAVGTKVPPEPELMEQLQVSRNTLREAIRALTHAGLLKTRQGDGTYVS 74 Query: 78 SSSVLGSVIEKVINHTDMLESLEVRYXXXXXXXXXXXXXXXXXDLEAIRTCLDKCRQAAG 137 SSS LG V++K I + LE+LEVR+ DLE + CL++ ++A Sbjct: 75 SSSALGPVLKKRIQRSSWLETLEVRHALEKEAASLSAQRRDEEDLERMAYCLEQSKEAIH 134 Query: 138 QQDLKAYAHWDVEFHKMVIAASHNQLMGNLYNHITEALHNMVLETEDFKNAF--YHDSHD 195 + D YAHWD+EFH + A+S N L+ LY++I++++ ++++ + K+ F +HD+H Sbjct: 135 KADADGYAHWDIEFHHAIFASSRNGLLIELYDYISDSVPPILVDMFN-KDRFHGFHDNHA 193 Query: 196 LLYQAIANRDCPQAEEAVRLYI 217 L AI +D +A E V+ YI Sbjct: 194 QLLDAIKEQDSAKAVEMVQQYI 215 >Q5WKT9.1 Q5WKT9_BACSK GntR family transcriptional regulator Length = 230 Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 91/205 (44%), Positives = 132/205 (64%), Gaps = 1/205 (0%) Query: 18 AYQIQGKIENGEWRVGMRIPPEPELMEQLQVSRNTLREAIRALTYAGLLKTRQGDGTYVC 77 A Q++ IE+G+W VGMRIP EPELM +L VSRNTLREAIRAL +AGLLKT+QGDGTYVC Sbjct: 15 ALQMENMIESGKWSVGMRIPAEPELMAELNVSRNTLREAIRALIHAGLLKTKQGDGTYVC 74 Query: 78 SSSVLGSVIEKVINHTDMLESLEVRYXXXXXXXXXXXXXXXXXDLEAIRTCLDKCRQAAG 137 SSS LG V++K + +D L++LEVRY + + L++C AA Sbjct: 75 SSSALGVVLKKRVLRSDTLQTLEVRYALEREGAHLAAQRRTDDEAHELLLQLERCEAAAK 134 Query: 138 QQDLKAYAHWDVEFHKMVIAASHNQLMGNLYNHITEALHNMVLETEDFK-NAFYHDSHDL 196 + D+ + D++ H+M+I ASHN+++ +Y+HI EALH+ + ++ +A + H Sbjct: 135 RGDIDQFVTADIQLHQMIINASHNEILIEIYSHIGEALHDSITSLTRYEVDADFVAMHRQ 194 Query: 197 LYQAIANRDCPQAEEAVRLYIEKAR 221 L +AI +D +A AV YIE+++ Sbjct: 195 LVEAIVAQDGDRAVAAVHRYIEESK 219 >B8GGM0.1 B8GGM0_METPE GntR domain protein Length = 230 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 93/209 (44%), Positives = 129/209 (61%), Gaps = 2/209 (0%) Query: 18 AYQIQGKIENGEWRVGMRIPPEPELMEQLQVSRNTLREAIRALTYAGLLKTRQGDGTYVC 77 A Q++ IE+G+W+VG +IP EPELM Q +VSRNTLREAI++L +AGLL+TRQG GT V Sbjct: 16 AEQMEQMIESGQWQVGKKIPAEPELMGQFEVSRNTLREAIQSLVHAGLLETRQGIGTTVK 75 Query: 78 SSSVLGSVIEKVINHTDMLESLEVRYXXXXXXXXXXXXXXXXXDLEAIRTCLDKCRQAAG 137 S S LG V+E+ I +D+LE+LEVR DLE I+ CLD+C+QA+ Sbjct: 76 SDSDLGVVLERKIKKSDLLETLEVRLGFEREAAQLAAERRTAEDLEQIQCCLDQCKQASE 135 Query: 138 QQDLKAYAHWDVEFHKMVIAASHNQLMGNLYNHITEALHNMVLETEDFKNAFY--HDSHD 195 DL + D+ FHK V+ A+HN + LY HIT+AL N + E KN + ++ H Sbjct: 136 NNDLFQFVKMDIAFHKSVVKATHNGMFIELYEHITDALQNSINEIMRIKNTVHVENEIHI 195 Query: 196 LLYQAIANRDCPQAEEAVRLYIEKARTKM 224 L+QAI + D A + V Y+ A+ + Sbjct: 196 DLFQAIHSGDQQLALDCVNKYLNDAKESL 224 >B1KVD3.1 B1KVD3_CLOBM Transcriptional regulator, GntR family Length = 229 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 90/204 (44%), Positives = 124/204 (60%), Gaps = 2/204 (0%) Query: 20 QIQGKIENGEWRVGMRIPPEPELMEQLQVSRNTLREAIRALTYAGLLKTRQGDGTYVCSS 79 QI+ IE+G W+VG +IP EPELM + VSRNTLREAI++L + G+L+TRQG GT V S+ Sbjct: 18 QIENMIESGLWKVGEKIPAEPELMNKFDVSRNTLREAIQSLVHVGMLETRQGIGTIVKSN 77 Query: 80 SVLGSVIEKVINHTDMLESLEVRYXXXXXXXXXXXXXXXXXDLEAIRTCLDKCRQAAGQQ 139 S LG +EK I +D+LE+LEVR DLE I TCL KC+ AA Sbjct: 78 SNLGMALEKKIQKSDLLETLEVRLVLEREAAQLAAERRDVEDLEQIETCLKKCKIAAENN 137 Query: 140 DLKAYAHWDVEFHKMVIAASHNQLMGNLYNHITEALHNMVLETEDFKN--AFYHDSHDLL 197 D + D++FHK ++ A+HN++ LY HIT++L N V + + KN +F + H L Sbjct: 138 DPLQFIKMDIDFHKAIVQATHNKMFIELYEHITDSLQNSVDKVMEIKNTTSFESEIHYSL 197 Query: 198 YQAIANRDCPQAEEAVRLYIEKAR 221 +AI D A E+V Y+ KA+ Sbjct: 198 LEAIKTGDTQLAVESVNEYLNKAK 221 >A7GF63.1 A7GF63_CLOBL Transcriptional regulator, GntR family Length = 229 Score = 170 bits (430), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 90/204 (44%), Positives = 123/204 (60%), Gaps = 2/204 (0%) Query: 20 QIQGKIENGEWRVGMRIPPEPELMEQLQVSRNTLREAIRALTYAGLLKTRQGDGTYVCSS 79 QI+ IE G W+VG +IP EPELM + VSRNTLREAI++L + G+L+TRQG GT V S+ Sbjct: 18 QIENMIEGGLWKVGEKIPAEPELMNKFDVSRNTLREAIQSLVHVGMLETRQGIGTIVKSN 77 Query: 80 SVLGSVIEKVINHTDMLESLEVRYXXXXXXXXXXXXXXXXXDLEAIRTCLDKCRQAAGQQ 139 S LG +EK I +D+LE+LEVR DLE I TCL KC AA Sbjct: 78 SNLGMALEKKIQKSDLLETLEVRLALEREAAQLAAERRDVEDLEQIETCLKKCNIAAENN 137 Query: 140 DLKAYAHWDVEFHKMVIAASHNQLMGNLYNHITEALHNMVLETEDFKN--AFYHDSHDLL 197 D + D++FHK ++ A+HN++ LY HIT++L N V + + KN +F ++ H L Sbjct: 138 DPLQFIKMDIDFHKSIVQATHNKMFIELYEHITDSLQNSVDKVMEIKNTTSFENEIHYSL 197 Query: 198 YQAIANRDCPQAEEAVRLYIEKAR 221 +AI D A E+V Y+ KA+ Sbjct: 198 LEAIKTGDTQLAVESVNEYLNKAK 221 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,056,650,081 Number of extensions: 35911899 Number of successful extensions: 112534 Number of sequences better than 1.0e-05: 2223 Number of HSP's gapped: 111602 Number of HSP's successfully gapped: 2223 Length of query: 225 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 94 Effective length of database: 1,826,543,238 Effective search space: 171695064372 Effective search space used: 171695064372 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)