BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0423.0004.p (1082 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG21.1 B3KG21_9BACI ATP-dependent nuclease subunit B 1403 0.0 B1DFQ7.1 B1DFQ7_9BACL ATP-dependent nuclease subunit B 1048 0.0 Q5L264.1 ADDB_GEOKA ATP-dependent helicase/deoxyribonuclease sub... 904 0.0 C3J2Q0.1 C3J2Q0_9BACI ATP-dependent nuclease subunit B 904 0.0 B7YBE4.1 B7YBE4_9BACI ATP-dependent nuclease subunit B 904 0.0 >B3KG21.1 B3KG21_9BACI ATP-dependent nuclease subunit B Length = 1176 Score = 1403 bits (3632), Expect = 0.0, Method: Compositional matrix adjust. Identities = 695/1092 (63%), Positives = 854/1092 (78%), Gaps = 23/1092 (2%) Query: 1 MLIYKIISRRKEELKLFGASSDRPGFVERLSQLHTELKRCCLGAADLEEQLSGMRDSTLR 60 ML+YKI+ RRKEEL +FGAS ++ GFV +LS+L+TE+KR C+ A+ +EEQL M + Sbjct: 94 MLLYKILRRRKEELHMFGASGEQHGFVGKLSELYTEMKRYCIDASCVEEQLGQMVSGSGN 153 Query: 61 SPILASKLDDLHIVFSELEQEMSQLYIDEEDRLAELAEHIKDSSYIRGSEIWVDGFHGFT 120 SP+L KL+D+ VF + E E+S+ Y+DEED LA LAE + +S YI+ ++IW+DGFHGFT Sbjct: 154 SPMLRRKLEDIVTVFRDFEVEISRFYMDEEDTLASLAEGVTESEYIKRADIWIDGFHGFT 213 Query: 121 TQEFAVLRELMQYASKVTISLTLDRIYPPGLQPHDLELFHPAAVTFIKLRGMAEEMGLTV 180 QE+ VL+E++ +A +VTI+LTLD+ Y G PH+L+LFHP AVT+IKL+G+ +E+GL Sbjct: 214 PQEYRVLQEIIVHAKRVTIALTLDKPYRNGTVPHELDLFHPTAVTYIKLKGIIDEIGLEA 273 Query: 181 WDELLAPPVLPRFAGSPVLAHLERGFGRRDRWT---------GXXXXXXXXXXXXXXXSR 231 +L P VLPRF SP+LAHLERG+ R+ RW R Sbjct: 274 EHRILHPDVLPRFQESPMLAHLERGYDRKKRWAEPDEGPDTASSPNRGRKGLLLHAASHR 333 Query: 232 RAEVEGSLREMLRLAREEGAKYGEMAVFMRNIADYEQLAAPLFQDYGIPFFLDQKMNELH 291 RAE+EG+LREMLRLA+EEGA+Y EMAVF+RN+ DYE L PLF++YG+P+FLDQK +ELH Sbjct: 334 RAEIEGALREMLRLAQEEGARYREMAVFVRNMGDYEHLMGPLFREYGVPYFLDQKRSELH 393 Query: 292 HPLVEFIRSAFDVVRRRWRYEDVFRCVKTELLLPLDRSVTRADMDALENYVLACGIQGYR 351 HPLVEFIRSA DV+ RRWRYEDVFRCVKT+LLLPLD S+TR DMD LEN+VLA GIQG R Sbjct: 394 HPLVEFIRSALDVIGRRWRYEDVFRCVKTDLLLPLDGSLTREDMDRLENHVLASGIQGTR 453 Query: 352 WTDGRSWKGIPSLSLEG--ARVVDEELLAKMEACRRVITGPLQAFEQRIKKSRSALELCK 409 WTDGR WKG+PSLSLE + + +++ +A +E R+VIT PL AFE+R+KK+ SA + Sbjct: 454 WTDGRPWKGVPSLSLEEGESEIRNQDGMAAIEYARKVITEPLHAFEKRMKKAASATDQST 513 Query: 410 AVYFLLQDMDAARKLEQMSARALELGQPEAAREHTQLWGAVLDLLDQIAEMMGNERMEFE 469 AVY LL++ KLE +S AL+ G+PE AREH Q+WGAVL LLDQI EMMG E++ E Sbjct: 514 AVYRLLEECAVPEKLELLSRAALDAGRPEEAREHRQVWGAVLGLLDQIVEMMGAEKLSTE 573 Query: 470 VFAGVLETGLAELKMGLVPPALDQVLVGNMDRTRVSGVKYAFLLGFNEGVVPAQFKEDGI 529 +F GVL TGL E+KM LVPP+LDQVL+G+MDRTR GVKYAFLLG N+GV+PAQF++DGI Sbjct: 574 LFTGVLGTGLTEMKMALVPPSLDQVLIGSMDRTRTGGVKYAFLLGINDGVLPAQFQDDGI 633 Query: 530 LSEGERLLLENAGMELAPGSSRKLLDERFLIYNTLTTASRKLWISYATADEEGKALLPSE 589 L+E ER+ LE+ G+ELAP SR+LLDERFLIYN LT+AS++LW+SY AD+EGK LLPSE Sbjct: 634 LTEPERVHLEDRGLELAPSISRRLLDERFLIYNALTSASKQLWVSYPAADDEGKPLLPSE 693 Query: 590 IIRQLHGMFPGALKESFLSGFPSSAAGVPDDAETLEALHLSFVSQPEQTLRMLIMQLRQY 649 ++R L MF L+E L FP AG LE + +P++TL L +LR + Sbjct: 694 VVRHLKLMF--QLEEEPL--FPRPHAG----QSALE--QEGYAVRPDKTLAYLAGRLRDW 743 Query: 650 RQGVEIPAIWWDVYNWFITDAEYGPKLERLLGSLFYRNEGIRLKRETSLRLYGGTTLRGS 709 R G EIP +WW VYNW+ P+L +L SL YRNE LK ETS +LYG T LR S Sbjct: 744 RNGEEIPDLWWHVYNWYAEQPGLRPRLTTMLSSLSYRNEARPLKLETSRQLYG-TKLRTS 802 Query: 710 VSRMEKFVACAFSHFASYGLRLKERQLYKLKAPDIGQLFHAALSDMALRLQKQGRSWGSM 769 VSRME+FVAC FSHFAS+GL+L+ERQLY+L+APDIGQLFHAALS MA++ Q Q RSWG + Sbjct: 803 VSRMERFVACPFSHFASHGLKLRERQLYRLQAPDIGQLFHAALSSMAVKFQSQHRSWGDL 862 Query: 770 SAEECRREAGETVDRLSPLLQGEILMSSKRYGYISRKLKNIVGRASVILGEHARRGSFEP 829 +AEEC REA TVDRL+P+LQGEIL+SSKRYGYISRKLKNIVGRASVILGE ARRG FEP Sbjct: 863 TAEECLREAEATVDRLAPMLQGEILLSSKRYGYISRKLKNIVGRASVILGEQARRGKFEP 922 Query: 830 VGLELDFGPGKDLPPLRITLPNGCVMEVVGRIDRVDMAEGEQGILLRVIDYKSSHKDLKL 889 +GLELDFGPGK LPPL LPNG ME+VGRIDRVDMA GE GI+LRVIDYKSS KDL+L Sbjct: 923 IGLELDFGPGKPLPPLAFELPNGTKMEIVGRIDRVDMARGEHGIMLRVIDYKSSQKDLRL 982 Query: 890 HEVYYGLSLQMLTYLDVLLTYSEQWLGQTALPAGTLYFHVHDPLLTSANGMNREQAEQEL 949 HEVYYGLSLQMLTYLDVLLT++E+WLG+ ALPAGTLYFHVHDP+L SANGM EQA +EL Sbjct: 983 HEVYYGLSLQMLTYLDVLLTFAEEWLGEQALPAGTLYFHVHDPVLQSANGMTPEQAAEEL 1042 Query: 950 MKRFKMKGLLTADREVVSLMDTTLDKGHSSIVPVALKSDGSFYSSASVATPEQWGHLLSS 1009 +KR+KMKGLL ADRE VSLMD+ L+KGHS+I+PVA+K+DGSFYSSA+VATP+QW LLS+ Sbjct: 1043 LKRYKMKGLLLADREAVSLMDSFLEKGHSAILPVAVKTDGSFYSSAAVATPDQWETLLST 1102 Query: 1010 VRSTISDIGTRITEGDVAIQPYRIQQETACTFCSFRPVCQFDETVEGNAYNNLGKPGKEV 1069 VR + +IG+RIT GDVAI+PYRIQQETACTFCSFRPVCQFD+ +EG+ Y LGKPGK+ Sbjct: 1103 VRENMLNIGSRITGGDVAIKPYRIQQETACTFCSFRPVCQFDDAIEGSEYKLLGKPGKDQ 1162 Query: 1070 IWDLLSR-EGGE 1080 +WD+L +GGE Sbjct: 1163 VWDMLGHPKGGE 1174 >B1DFQ7.1 B1DFQ7_9BACL ATP-dependent nuclease subunit B Length = 1175 Score = 1048 bits (2710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/1091 (49%), Positives = 728/1091 (66%), Gaps = 31/1091 (2%) Query: 1 MLIYKIISRRKEELKLFGASSDRPGFVERLSQLHTELKRCCLGAADLEEQLSGMRDSTLR 60 M+++KII R ++L+LF + +++PGF+ERL +L TE KR + A L+E+ + + DSTL Sbjct: 94 MMLFKIIHRLGKQLELFQSGAEQPGFIERLGELLTEWKRYGIDANLLKEKTASVEDSTL- 152 Query: 61 SPILASKLDDLHIVFSELEQEMSQLYIDEEDRLAELAEHIKDSSYIRGSEIWVDGFHGFT 120 L KL DL +V+ +LEQE+ LYID ED L +L + ++G+ +W+DGFHGFT Sbjct: 153 ---LDRKLHDLRLVYDKLEQELLGLYIDSEDYLTQLIAGYAYAPAMQGAHLWIDGFHGFT 209 Query: 121 TQEFAVLRELMQYASKVTISLTLDRIYPPGLQPHDLELFHPAAVTFIKLRGMAEEMGLTV 180 +E+ L L+ +++VT++LTLDR Y G PH+LELFHP A T+ KL +A + G++V Sbjct: 210 PKEYDALGTLIASSAEVTVALTLDRPYDNGEMPHELELFHPTAETYGKLSALAAQAGVSV 269 Query: 181 WDELLAPPVLP-RFAGSPVLAHLERGFGRR------DRWTGXXXXXXXXXXXXXXXSRRA 233 +D ++ P RF GS +LAHLE+ +G R D+ +RRA Sbjct: 270 YDTVVLGEGAPTRFLGSTMLAHLEKHYGGRTPMLIPDKKMLAVDSPACGLSLHASANRRA 329 Query: 234 EVEGSLREMLRLAREEGAKYGEMAVFMRNIADYEQLAAPLFQDYGIPFFLDQKMNELHHP 293 EVE + R+M+R AREEG ++ +MAV +RN A+Y +F DY IP+FLDQK N +HHP Sbjct: 330 EVEAAARDMVRRAREEGLRWRDMAVMVRNAAEYTDYIQTIFDDYEIPYFLDQKNNTVHHP 389 Query: 294 LVEFIRSAFDVVRRRWRYEDVFRCVKTELLLPLDRSVTRADMDALENYVLACGIQGYRWT 353 LVEFIRSA + V W YE VFRC+KTELL P+D S++R D LENYVLA G+ G++W Sbjct: 390 LVEFIRSALETVLHGWHYEAVFRCIKTELLFPIDGSMSRELFDRLENYVLAAGVDGWKWL 449 Query: 354 DGRSWKGIPSLSLEGARVVDEELLAKME-------ACRRVITGPLQAFEQRIKKSRSALE 406 D WK SLE E AK + A R I PL+ FEQ +KK+ + + Sbjct: 450 DRSRWKPFMQQSLEDEPDTVSEPSAKAKREFQAIMAAREAIVPPLRRFEQSLKKASNVKD 509 Query: 407 LCKAVYFLLQDMDAARKLEQMSARALELGQPEAAREHTQLWGAVLDLLDQIAEMMGNERM 466 +C+A+Y LL DAA +LE+ S G+ + AR H QLW V+ LLDQ+ EM+G+E M Sbjct: 510 MCEALYKLLDHADAADRLERWSREDSASGRTQRARSHRQLWDGVMQLLDQLVEMVGDEDM 569 Query: 467 EFEVFAGVLETGLAELKMGLVPPALDQVLVGNMDRTRVSGVKYAFLLGFNEGVVPAQFKE 526 E+FAG++ETGL LK+ VPPALDQ L+G+MDRTR VK ++LG N+GV+P + +E Sbjct: 570 PPELFAGMVETGLENLKLAAVPPALDQALIGSMDRTRSGDVKICYVLGANDGVMPMRIQE 629 Query: 527 DGILSEGERLLLENAGMELAPGSSRKLLDERFLIYNTLTTASRKLWISYATADEEGKALL 586 DG+L+E ER L G+ +APG R+LLDERFLIYN LTTAS+ LWIS+A ADEEGK LL Sbjct: 630 DGVLTEQERERLAEEGLVMAPGVRRRLLDERFLIYNALTTASQHLWISWAQADEEGKTLL 689 Query: 587 PSEIIRQLHGMFPGALKESFLSGFPSSAAGVPDDAETLEALHLSFVSQPEQTLRMLIMQL 646 PSE+IRQ+ +FPG + +G P+ D S++ P++TL LI +L Sbjct: 690 PSEVIRQVRQLFPG-IPVYQKAGEPTPGMETGD--------QRSYIEHPQRTLAYLITEL 740 Query: 647 RQYRQGVEIPAIWWDVYNWFITDAEYGPKLERLLGSLFYRNEGIRLKRETSLRLYGGTTL 706 R +RQG EI WWDVYNWF E+ KL+ + SL + N+ L T+ +LYG T L Sbjct: 741 RAWRQGSEIAPFWWDVYNWFAIRPEWQDKLQLMNASLSFSNQETVLTTTTAEQLYG-TKL 799 Query: 707 RGSVSRMEKFVACAFSHFASYGLRLKERQLYKLKAPDIGQLFHAALSDMALRLQKQGRSW 766 + SVSRME+FV+C F HFA +GLRL+ERQ+Y+L+APD+GQLFHAALS +A + G+ W Sbjct: 800 KASVSRMERFVSCPFQHFAIHGLRLRERQMYRLEAPDVGQLFHAALSRLAGGV---GQRW 856 Query: 767 GSMSAEECRREAGETVDRLSPLLQGEILMSSKRYGYISRKLKNIVGRASVILGEHARRGS 826 GSM + R A + VD L+P LQ +IL+SS R+ YI+RKLK IV +A+VIL EH+RR Sbjct: 857 GSMPEAQIREAAAKAVDELAPRLQSQILLSSGRFQYIARKLKEIVAQAAVILSEHSRRAQ 916 Query: 827 FEPVGLELDFGPGKDLPPLRITLPNGCVMEVVGRIDRVDMAEGEQGILLRVIDYKSSHKD 886 F+PVGLE+DFGP LP L I L NG ME++GRIDRVD AE E+G+LLRV+DYKSS Sbjct: 917 FQPVGLEVDFGPDGTLPSLVIPLDNGGTMEIIGRIDRVDAAETEEGLLLRVLDYKSSATQ 976 Query: 887 LKLHEVYYGLSLQMLTYLDVLLTYSEQWLGQTALPAGTLYFHVHDPLLTSANGMNREQAE 946 LKL EV +GLSLQMLTYLDVL+T++ +WLG+ A PAG LYFHVH+P+L +NG++ + Sbjct: 977 LKLEEVAFGLSLQMLTYLDVLVTHASEWLGKPASPAGVLYFHVHNPMLAVSNGLSGAEVN 1036 Query: 947 QELMKRFKMKGLLTADREVVSLMDTTLDKGHSSIVPVALKSDGSFYSSASVATPEQWGHL 1006 ++K+FK +GL+TA+ E LMD L+ G+S I+PVALK DGSFYSS+SV T +QW L Sbjct: 1037 ARMLKKFKTRGLITAEAETAKLMDGDLESGYSEILPVALKRDGSFYSSSSVVTEDQWDVL 1096 Query: 1007 LSSVRSTISDIGTRITEGDVAIQPYRIQQETACTFCSFRPVCQFDETVEGNAYNNLGKPG 1066 SSVR TI IGT I G V+I+PYR+ ++ C +C ++PVCQFD EGN Y L K Sbjct: 1097 RSSVRRTIGKIGTEIGCGKVSIEPYRLGTKSPCQYCDYKPVCQFDPLFEGNEYTKLNKLS 1156 Query: 1067 KEVIWDLLSRE 1077 +E IW L E Sbjct: 1157 EEEIWQQLHGE 1167 >Q5L264.1 ADDB_GEOKA ATP-dependent helicase/deoxyribonuclease subunit B EC=3.6.1.- Length = 1167 Score = 904 bits (2337), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/1093 (44%), Positives = 691/1093 (63%), Gaps = 33/1093 (3%) Query: 1 MLIYKIISRRKEELKLFGASSDRPGFVERLSQLHTELKRCCLGAADLEEQLSGMRDSTLR 60 M+I KII +RK+ELKLFG ++D+ GF+E+L+++ TE KR CL +L D + Sbjct: 94 MMIRKIIEQRKQELKLFGRAADKHGFIEQLNEMITECKRYCLTPGELRRHAKAFEDGPDQ 153 Query: 61 S--PILASKLDDLHIVFSELEQEMSQLYIDEEDRLAELAEHIKDSSYIRGSEIWVDGFHG 118 +LA KL D+ +V+ ELE+ + Y+D ED L LAEHI SSY+R ++I++DGFH Sbjct: 154 PGRRLLADKLSDVALVYEELERSLIGHYLDSEDYLRLLAEHIPRSSYLRDADIYIDGFHH 213 Query: 119 FTTQEFAVLRELMQYASKVTISLTLDRIYPPGLQPHDLELFHPAAVTFIKLRGMAEEMGL 178 F QE+ ++ +L+++ +VT+ LT+DR Y G+ P +L LF+ A T+ +LR +A + Sbjct: 214 FAPQEYMIIEQLLRHCRRVTVCLTIDRPYDDGM-PDELHLFYLPAQTYRQLRELALSNDI 272 Query: 179 TVWDELLAPPVLP--RFAGSPVLAHLERGFGRRDRWTGXXXXXXXXXXXXXXXSRRAEVE 236 + + P VL R L HLE F RR +RRAE+E Sbjct: 273 AIEE----PIVLSANRRHEDRALVHLEAQFHRRPLLP--YGAKTDAVHLYEASNRRAEIE 326 Query: 237 GSLREMLRLAREEGAKYGEMAVFMRNIADYEQLAAPLFQDYGIPFFLDQKMNELHHPLVE 296 RE++RL R+EGA+Y ++A+ +R Y L +F D+GIP+F+D+K HHPL+E Sbjct: 327 AVAREIIRLVRDEGARYRDIALIIRQTEAYRDLVKTVFFDFGIPYFMDEKEPMHHHPLIE 386 Query: 297 FIRSAFDVVRRRWRYEDVFRCVKTELLLPLDRSVT--RADMDALENYVLACGIQGYRWTD 354 +R+A + V RWRYE VFR VKT+LL P D + R D LENYVLA GI+G +WT+ Sbjct: 387 LVRAALETVVTRWRYEAVFRAVKTDLLFPTDGDLHMWREAADKLENYVLAYGIKGDKWTN 446 Query: 355 GRSWKGIPSLSLEGARV--VDEE--LLAKMEACRRVITGPLQAFEQRIKKSRSALELCKA 410 W +L+G V DEE + R + PL+ E+R++++ C A Sbjct: 447 NERWAYRRYQALDGLNVPQTDEERQFEDMLNEWREALAAPLRRLERRLRRAEDGRGFCMA 506 Query: 411 VYFLLQDMDAARKLEQMSARALELGQPEAAREHTQLWGAVLDLLDQIAEMMGNERMEFEV 470 +Y L+++ +KLE+MSA+A G+ AR+H Q W AV+DLLDQ EM+G E + Sbjct: 507 LYLFLEELQIPKKLEKMSAQAEADGRLVEARQHEQAWNAVVDLLDQYVEMLGTESLPLAE 566 Query: 471 FAGVLETGLAELKMGLVPPALDQVLVGNMDRTRVSGVKYAFLLGFNEGVVPAQFKEDGIL 530 F ++E GL L+ LVPPA+DQV+V +DR+R+ +KYAF++G N+GV+PA+ KEDG++ Sbjct: 567 FVKIIEAGLDRLEFSLVPPAMDQVIVAQLDRSRLIDIKYAFVIGANDGVIPAKVKEDGLM 626 Query: 531 SEGERLLLENAGMELAPGSSRKLLDERFLIYNTLTTASRKLWISYATADEEGKALLPSEI 590 +E ER L G+ LAPG +L + F +Y L SR+L+++Y AD EGKAL+PS + Sbjct: 627 AEVEREQLRELGVALAPGGREQLFYDPFFVYLALVCPSRRLYVTYPLADGEGKALMPSPL 686 Query: 591 IRQLHGMFPGALKESFLSGFPSSAAGV-PDDAETLEALHLSFVSQPEQTLRMLIMQLRQY 649 I+QL +FP A P G P DA +A +FV+ P T LI QLR + Sbjct: 687 IKQLTELFPHA---------PVHLCGNDPFDAPAEKAE--AFVTAPRATQTYLISQLRAW 735 Query: 650 RQGVEIPAIWWDVYNWFITDAEYGPKLERLLGSLFYRNEGIRLKRETSLRLYGGTTLRGS 709 ++ I +WWDVYN FI ++ ++ + +LFY N LK++ S RLYG ++ S Sbjct: 736 KRNYGIDPLWWDVYNTFIGHRDWKEQVRHAVSALFYTNGATPLKKQWSQRLYG-KKIQAS 794 Query: 710 VSRMEKFVACAFSHFASYGLRLKERQLYKLKAPDIGQLFHAALSDMALRLQKQGRSWGSM 769 VSRME+F C ++HFAS+GLRLKER +++L+APD+GQLFHAA+ +A RL++Q W + Sbjct: 795 VSRMEQFQKCPYAHFASHGLRLKERNVFRLEAPDVGQLFHAAIKQIADRLREQHLDWREL 854 Query: 770 SAEECRREAGETVDRLSPLLQGEILMSSKRYGYISRKLKNIVGRASVILGEHARRGSFEP 829 S +C R + E V+R++PL+Q ++L SS RY Y+ RKLK++V R + +L EHAR F P Sbjct: 855 SRPDCERLSAEAVERIAPLIQQQVLSSSHRYEYMKRKLKHVVARTTHVLSEHARASGFVP 914 Query: 830 VGLELDFGPGKDLPPLRITLPNGCVMEVVGRIDRVDMAEGEQGILLRVIDYKSSHKDLKL 889 +GLEL FGP DLPPLR LP+G VME+VGRIDRVD AE QG+LLR+IDYKSS K L L Sbjct: 915 IGLELSFGPNGDLPPLRFRLPDGTVMELVGRIDRVDKAESSQGVLLRIIDYKSSAKTLDL 974 Query: 890 HEVYYGLSLQMLTYLDVLLTYSEQWLGQTALPAGTLYFHVHDPLLTSANGMNRE-QAEQE 948 EVYYGL+LQMLTYLD++LTY+EQ +GQ ALPAG LYFH+H+P++ + ++ E + ++ Sbjct: 975 TEVYYGLALQMLTYLDIVLTYAEQLVGQPALPAGVLYFHIHNPIVQAKQWVDDEVEMAKK 1034 Query: 949 LMKRFKMKGLLTADREVVSLMDTTLDKGH-SSIVPVALKSDGSFYSSASVATPEQWGHLL 1007 L++ F+M+GLL AD E + LMD + G S IVP L GS +S +SVA+P + L Sbjct: 1035 LLEPFRMRGLLLADVEAIRLMDGRTEDGQWSLIVPAQLTKSGSIHSRSSVASPSDFAALR 1094 Query: 1008 SSVRSTISDIGTRITEGDVAIQPYRIQQETACTFCSFRPVCQFDETVEGNAYNNLGKPGK 1067 VR DIG +I +G V+I PY+++ +TAC FC F+PVCQFDE + GN Y L K Sbjct: 1095 QHVRRLFIDIGGQIADGVVSIAPYKLKDKTACEFCVFKPVCQFDEALSGNEYRKLAPQTK 1154 Query: 1068 EVIWDLLSREGGE 1080 E + + L+ EG E Sbjct: 1155 EAVIEKLA-EGKE 1166 >C3J2Q0.1 C3J2Q0_9BACI ATP-dependent nuclease subunit B Length = 1172 Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/1093 (44%), Positives = 691/1093 (63%), Gaps = 33/1093 (3%) Query: 1 MLIYKIISRRKEELKLFGASSDRPGFVERLSQLHTELKRCCLGAADLEEQLSGMRD--ST 58 M+I KII +RK+ELKLFG ++D+ GF+E+L+++ E KR CL +L D S Sbjct: 99 MMIRKIIEQRKQELKLFGRAADKHGFIEQLNEMIAECKRYCLTPGELRRHAEAFEDGPSQ 158 Query: 59 LRSPILASKLDDLHIVFSELEQEMSQLYIDEEDRLAELAEHIKDSSYIRGSEIWVDGFHG 118 +LA KL D+ +V+ ELE+ + Y+D ED L LAEHI SSY+R ++I++DGFH Sbjct: 159 PGRRLLADKLSDVALVYEELERSLIGHYLDSEDYLRLLAEHIPRSSYLRDADIYIDGFHH 218 Query: 119 FTTQEFAVLRELMQYASKVTISLTLDRIYPPGLQPHDLELFHPAAVTFIKLRGMAEEMGL 178 F QE+ ++ +L+ + +VT+ LT+DR Y G+ P +L LF+ A T+ +LR +A + Sbjct: 219 FAPQEYMIIEQLLLHCRRVTVCLTIDRPYDDGM-PDELHLFYLPAQTYRQLRELALSNDI 277 Query: 179 TVWDELLAPPVLP--RFAGSPVLAHLERGFGRRDRWTGXXXXXXXXXXXXXXXSRRAEVE 236 + + P VL R L HLE F RR +RRAE+E Sbjct: 278 AIEE----PIVLSANRRHEDRALVHLEAQFHRRPLLP--YGAKTDAVHLYEASNRRAEIE 331 Query: 237 GSLREMLRLAREEGAKYGEMAVFMRNIADYEQLAAPLFQDYGIPFFLDQKMNELHHPLVE 296 RE++RL R+EGA+Y ++A+ +R Y L +F D+GIP+F+D+K HHPL+E Sbjct: 332 AVAREIIRLVRDEGARYRDIALIIRQTEAYRDLVKTVFFDFGIPYFMDEKEPMHHHPLIE 391 Query: 297 FIRSAFDVVRRRWRYEDVFRCVKTELLLPLDRSVT--RADMDALENYVLACGIQGYRWTD 354 +R+A + V RWRYE VFR VKT+LL P D + R D LENYVLA GI+G +WT+ Sbjct: 392 LVRAALETVVTRWRYEAVFRAVKTDLLFPTDGDLHMWREAADKLENYVLAYGIKGDKWTN 451 Query: 355 GRSWKGIPSLSLEGARV--VDEE--LLAKMEACRRVITGPLQAFEQRIKKSRSALELCKA 410 W +L+G V DEE + R + PL+ E+R++++ C A Sbjct: 452 NERWAYRRYQALDGLNVPQTDEERQFEDMLNEWREALAAPLRRLERRLRRAEDGRGFCMA 511 Query: 411 VYFLLQDMDAARKLEQMSARALELGQPEAAREHTQLWGAVLDLLDQIAEMMGNERMEFEV 470 +Y L+++ +KLE+MSA+A G+ AR+H Q W AV+DLLDQ EM+G E + Sbjct: 512 LYLFLEELQIPKKLEKMSAQAEADGRLVEARQHEQAWNAVVDLLDQYVEMLGAESLPLAE 571 Query: 471 FAGVLETGLAELKMGLVPPALDQVLVGNMDRTRVSGVKYAFLLGFNEGVVPAQFKEDGIL 530 F ++E GL L+ LVPPA+DQV+V +DR+R+ +KYAF++G N+GV+PA+ KEDG++ Sbjct: 572 FVKIIEAGLDRLEFSLVPPAMDQVIVAQLDRSRLIDIKYAFVIGANDGVIPAKVKEDGLM 631 Query: 531 SEGERLLLENAGMELAPGSSRKLLDERFLIYNTLTTASRKLWISYATADEEGKALLPSEI 590 +E ER L G+ LAPG +L + F +Y L SR+L+++Y AD EGKAL+PS + Sbjct: 632 AEVEREQLRELGVALAPGGREQLFYDPFFVYLALVCPSRRLYVTYPLADGEGKALMPSPL 691 Query: 591 IRQLHGMFPGALKESFLSGFPSSAAGV-PDDAETLEALHLSFVSQPEQTLRMLIMQLRQY 649 I+QL +FP A P G P DA +A +FV+ P T LI QLR + Sbjct: 692 IKQLTELFPHA---------PVHLCGNDPFDAPAEKAE--AFVTAPRATQTYLISQLRAW 740 Query: 650 RQGVEIPAIWWDVYNWFITDAEYGPKLERLLGSLFYRNEGIRLKRETSLRLYGGTTLRGS 709 ++ I +WWDVYN FI ++ ++ + +LFY N LK++ S RLYG ++ S Sbjct: 741 KRNYGIDPLWWDVYNTFIGHRDWKEQVRHAVSALFYTNGATPLKKQWSQRLYG-KKIQAS 799 Query: 710 VSRMEKFVACAFSHFASYGLRLKERQLYKLKAPDIGQLFHAALSDMALRLQKQGRSWGSM 769 VSRME+F C ++HFAS+GLRLKER +++L+APD+GQLFHAA+ +A RL++Q W + Sbjct: 800 VSRMEQFQKCPYAHFASHGLRLKERNVFRLEAPDVGQLFHAAIKQIADRLREQHLDWREL 859 Query: 770 SAEECRREAGETVDRLSPLLQGEILMSSKRYGYISRKLKNIVGRASVILGEHARRGSFEP 829 S +C R + E V+R++PL+Q ++L SS RY Y+ RKLK++V R + +L EHAR F P Sbjct: 860 SRPDCERLSAEAVERIAPLIQQQVLSSSHRYEYMKRKLKHVVARTTHVLSEHARASGFVP 919 Query: 830 VGLELDFGPGKDLPPLRITLPNGCVMEVVGRIDRVDMAEGEQGILLRVIDYKSSHKDLKL 889 +GLEL FGP DLPPLR LP+G VME+VGRIDRVD AE QG+LLR+IDYKSS K L L Sbjct: 920 IGLELSFGPNGDLPPLRFRLPDGTVMELVGRIDRVDKAESSQGVLLRIIDYKSSAKTLDL 979 Query: 890 HEVYYGLSLQMLTYLDVLLTYSEQWLGQTALPAGTLYFHVHDPLLTSANGMNRE-QAEQE 948 EVYYGL+LQMLTYLD++LTY+EQ +GQ ALPAG LYFH+H+P++ + ++ E + ++ Sbjct: 980 TEVYYGLALQMLTYLDIVLTYAEQLVGQPALPAGVLYFHIHNPIVQAKQWVDDEVEMAKK 1039 Query: 949 LMKRFKMKGLLTADREVVSLMDTTLDKGH-SSIVPVALKSDGSFYSSASVATPEQWGHLL 1007 L++ F+M+GLL AD E + LMD+ ++G S IVP L GS +S +SVA+P + L Sbjct: 1040 LLEPFRMRGLLLADVEAIRLMDSRTEEGQWSLIVPAQLTKSGSIHSRSSVASPSDFAALR 1099 Query: 1008 SSVRSTISDIGTRITEGDVAIQPYRIQQETACTFCSFRPVCQFDETVEGNAYNNLGKPGK 1067 VR DIG +I +G V+I PY+++ +TAC FC F+PVCQFDE + GN Y L K Sbjct: 1100 QHVRRLFIDIGGQIADGVVSIAPYKLKDKTACEFCVFKPVCQFDEALSGNEYRKLAPQTK 1159 Query: 1068 EVIWDLLSREGGE 1080 E + + L+ EG E Sbjct: 1160 EAVIEKLA-EGKE 1171 >B7YBE4.1 B7YBE4_9BACI ATP-dependent nuclease subunit B Length = 1172 Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/1093 (44%), Positives = 691/1093 (63%), Gaps = 33/1093 (3%) Query: 1 MLIYKIISRRKEELKLFGASSDRPGFVERLSQLHTELKRCCLGAADLEEQLSGMRD--ST 58 M+I KII +RK+ELKLFG ++D+ GF+E+L+++ E KR CL +L D S Sbjct: 99 MMIRKIIEQRKQELKLFGRAADKHGFIEQLNEMIAECKRYCLTPGELRRHAEAFEDGPSQ 158 Query: 59 LRSPILASKLDDLHIVFSELEQEMSQLYIDEEDRLAELAEHIKDSSYIRGSEIWVDGFHG 118 +LA KL D+ +V+ ELE+ + Y+D ED L LAEHI SSY+R ++I++DGFH Sbjct: 159 PGRRLLADKLSDVALVYEELERSLIGHYLDSEDYLRLLAEHIPRSSYLRDADIYIDGFHH 218 Query: 119 FTTQEFAVLRELMQYASKVTISLTLDRIYPPGLQPHDLELFHPAAVTFIKLRGMAEEMGL 178 F QE+ ++ +L+ + +VT+ LT+DR Y G+ P +L LF+ A T+ +LR +A + Sbjct: 219 FAPQEYMIIEQLLLHCRRVTVCLTIDRPYDDGM-PDELHLFYLPAQTYRQLRELALSNDI 277 Query: 179 TVWDELLAPPVLP--RFAGSPVLAHLERGFGRRDRWTGXXXXXXXXXXXXXXXSRRAEVE 236 + + P VL R L HLE F RR +RRAE+E Sbjct: 278 AIEE----PIVLSANRRHEDRALVHLEAQFHRRPLLP--YGAKTDAVHLYEASNRRAEIE 331 Query: 237 GSLREMLRLAREEGAKYGEMAVFMRNIADYEQLAAPLFQDYGIPFFLDQKMNELHHPLVE 296 RE++RL R+EGA+Y ++A+ +R Y L +F D+GIP+F+D+K HHPL+E Sbjct: 332 AVAREIIRLVRDEGARYRDIALIIRQTEAYRDLVKTVFFDFGIPYFMDEKEPMHHHPLIE 391 Query: 297 FIRSAFDVVRRRWRYEDVFRCVKTELLLPLDRSVT--RADMDALENYVLACGIQGYRWTD 354 +R+A + V RWRYE VFR VKT+LL P D + R D LENYVLA GI+G +WT+ Sbjct: 392 LVRAALETVVTRWRYEAVFRAVKTDLLFPTDGDLHMWREAADKLENYVLAYGIKGDKWTN 451 Query: 355 GRSWKGIPSLSLEGARV--VDEE--LLAKMEACRRVITGPLQAFEQRIKKSRSALELCKA 410 W +L+G V DEE + R + PL+ E+R++++ C A Sbjct: 452 NERWAYRRYQALDGLNVPQTDEERQFEDMLNEWREALAAPLRRLERRLRRAEDGRGFCMA 511 Query: 411 VYFLLQDMDAARKLEQMSARALELGQPEAAREHTQLWGAVLDLLDQIAEMMGNERMEFEV 470 +Y L+++ +KLE+MSA+A G+ AR+H Q W AV+DLLDQ EM+G E + Sbjct: 512 LYLFLEELQIPKKLEKMSAQAEADGRLVEARQHEQAWNAVVDLLDQYVEMLGAESLPLAE 571 Query: 471 FAGVLETGLAELKMGLVPPALDQVLVGNMDRTRVSGVKYAFLLGFNEGVVPAQFKEDGIL 530 F ++E GL L+ LVPPA+DQV+V +DR+R+ +KYAF++G N+GV+PA+ KEDG++ Sbjct: 572 FVKIIEAGLDRLEFSLVPPAMDQVIVAQLDRSRLIDIKYAFVIGANDGVIPAKVKEDGLM 631 Query: 531 SEGERLLLENAGMELAPGSSRKLLDERFLIYNTLTTASRKLWISYATADEEGKALLPSEI 590 +E ER L G+ LAPG +L + F +Y L SR+L+++Y AD EGKAL+PS + Sbjct: 632 AEVEREQLRELGVALAPGGREQLFYDPFFVYLALVCPSRRLYVTYPLADGEGKALMPSPL 691 Query: 591 IRQLHGMFPGALKESFLSGFPSSAAGV-PDDAETLEALHLSFVSQPEQTLRMLIMQLRQY 649 I+QL +FP A P G P DA +A +FV+ P T LI QLR + Sbjct: 692 IKQLTELFPHA---------PVHLCGNDPFDAPAEKAE--AFVTAPRATQTYLISQLRAW 740 Query: 650 RQGVEIPAIWWDVYNWFITDAEYGPKLERLLGSLFYRNEGIRLKRETSLRLYGGTTLRGS 709 ++ I +WWDVYN FI ++ ++ + +LFY N LK++ S RLYG ++ S Sbjct: 741 KRNYGIDPLWWDVYNTFIGHRDWKEQVRHAVSALFYTNGATPLKKQWSQRLYG-KKIQAS 799 Query: 710 VSRMEKFVACAFSHFASYGLRLKERQLYKLKAPDIGQLFHAALSDMALRLQKQGRSWGSM 769 VSRME+F C ++HFAS+GLRLKER +++L+APD+GQLFHAA+ +A RL++Q W + Sbjct: 800 VSRMEQFQKCPYAHFASHGLRLKERNVFRLEAPDVGQLFHAAIKQIADRLREQHLDWREL 859 Query: 770 SAEECRREAGETVDRLSPLLQGEILMSSKRYGYISRKLKNIVGRASVILGEHARRGSFEP 829 S +C R + E V+R++PL+Q ++L SS RY Y+ RKLK++V R + +L EHAR F P Sbjct: 860 SRPDCERLSAEAVERIAPLIQQQVLSSSHRYEYMKRKLKHVVARTTHVLSEHARASGFVP 919 Query: 830 VGLELDFGPGKDLPPLRITLPNGCVMEVVGRIDRVDMAEGEQGILLRVIDYKSSHKDLKL 889 +GLEL FGP DLPPLR LP+G VME+VGRIDRVD AE QG+LLR+IDYKSS K L L Sbjct: 920 IGLELSFGPNGDLPPLRFRLPDGTVMELVGRIDRVDKAESSQGVLLRIIDYKSSAKTLDL 979 Query: 890 HEVYYGLSLQMLTYLDVLLTYSEQWLGQTALPAGTLYFHVHDPLLTSANGMNRE-QAEQE 948 EVYYGL+LQMLTYLD++LTY+EQ +GQ ALPAG LYFH+H+P++ + ++ E + ++ Sbjct: 980 TEVYYGLALQMLTYLDIVLTYAEQLVGQPALPAGVLYFHIHNPIVQAKQWVDDEVEMAKK 1039 Query: 949 LMKRFKMKGLLTADREVVSLMDTTLDKGH-SSIVPVALKSDGSFYSSASVATPEQWGHLL 1007 L++ F+M+GLL AD E + LMD+ ++G S IVP L GS +S +SVA+P + L Sbjct: 1040 LLEPFRMRGLLLADVEAIRLMDSRTEEGQWSLIVPAQLTKSGSIHSRSSVASPSDFAALR 1099 Query: 1008 SSVRSTISDIGTRITEGDVAIQPYRIQQETACTFCSFRPVCQFDETVEGNAYNNLGKPGK 1067 VR DIG +I +G V+I PY+++ +TAC FC F+PVCQFDE + GN Y L K Sbjct: 1100 QHVRRLFIDIGGQIADGVVSIAPYKLKDKTACEFCVFKPVCQFDEALSGNEYRKLAPQTK 1159 Query: 1068 EVIWDLLSREGGE 1080 E + + L+ EG E Sbjct: 1160 EAVIEKLA-EGKE 1171 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 6,248,541,503 Number of extensions: 260555296 Number of successful extensions: 596966 Number of sequences better than 1.0e-05: 381 Number of HSP's gapped: 594255 Number of HSP's successfully gapped: 494 Length of query: 1082 Length of database: 3,060,696,203 Length adjustment: 147 Effective length of query: 935 Effective length of database: 1,675,806,998 Effective search space: 1566879543130 Effective search space used: 1566879543130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 137 (57.4 bits)