BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0423.0003.p (1360 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG22.1 B3KG22_9BACI Recombination helicase AddA 1563 0.0 B1DFQ6.1 B1DFQ6_9BACL Recombination helicase AddA 1129 0.0 C5D6P7.1 C5D6P7_9BACI Recombination helicase AddA 972 0.0 Q2B975.1 Q2B975_9BACI AddA 952 0.0 C3J2Q1.1 C3J2Q1_9BACI Recombination helicase AddA 937 0.0 >B3KG22.1 B3KG22_9BACI Recombination helicase AddA Length = 1373 Score = 1563 bits (4048), Expect = 0.0, Method: Compositional matrix adjust. Identities = 822/1387 (59%), Positives = 982/1387 (70%), Gaps = 48/1387 (3%) Query: 6 EIEPKPEGSLWSDDQWRAIAESGDDILVAAAAGSGKTAVLVERIIRKISNEENGFSVDRL 65 E+ KPEGS+WSDDQW+AIA SGDD+LVAAAAGSGKTAVLVERIIRKI ++ GFSVDRL Sbjct: 3 EMIAKPEGSMWSDDQWKAIALSGDDMLVAAAAGSGKTAVLVERIIRKILDDAAGFSVDRL 62 Query: 66 LVATFTKAAAAEMRQRIREAXXXXXXXXXXXXXXXXXXXXXXRRQLALLGRASITTLHSF 125 LVATFTKAAAAEMR RIREA RRQLALLGRASITTLHSF Sbjct: 63 LVATFTKAAAAEMRGRIREALDRELDRDPDNEHI--------RRQLALLGRASITTLHSF 114 Query: 126 CLEVIRRYYQLIPIDPGFRILNEHEAEMMRQXXXXXXXXXKYGEVAGDGEDTVFVRLADW 185 C+EVIRRYYQLIP+DPGFRILNEHEA++MRQ KYGEV GD E + F+RLADW Sbjct: 115 CMEVIRRYYQLIPLDPGFRILNEHEADLMRQDMLEELFEEKYGEVEGDPE-SRFLRLADW 173 Query: 186 FSGERSDDAVHSLVQRLHDFARSHPWPAQWLRDTAADFSLPDTEALSRTPWVQSILADAK 245 FSGER+DDA++ LVQRL+DF+RSH WP+ WLR+TAA F + DTEAL TPWVQSILADA+ Sbjct: 174 FSGERTDDALYRLVQRLYDFSRSHSWPSHWLRETAAGFQVADTEALGNTPWVQSILADAR 233 Query: 246 LTLDGAASQLRQGREIALQPGGPAPYADNLAADLEMVQALQEALEFRPWAELYDIFIEIS 305 L L+GAA L+Q + IA+QPGGP PYADNL DL +V +L EA++ PW LY IF E S Sbjct: 234 LALNGAAGLLQQAKAIAMQPGGPTPYADNLDEDLRLVASLLEAIDTSPWESLYGIFREAS 293 Query: 306 FGKLKACKKDSTDPGLQERVKELRDNVKKSLLELQKSLFGRPAEAFLGELHEAAPLMREL 365 FGKLK+ +KD P LQE+VKELRDNVKK + EL+ +LFGRPA FL ELH AAPLM EL Sbjct: 294 FGKLKSVRKDEVLPELQEQVKELRDNVKKIVNELKNALFGRPASEFLRELHTAAPLMMEL 353 Query: 366 AETVIEFGERYRIEKAGRGMVDFSDLEHYCLQILRHADSEPGHSLPSDAAMEYRDQFDEV 425 AETVI FGERYR KA +GMVDF+DLEHYCL ILRH DS PGH +PSDAAMEYR+QFDEV Sbjct: 354 AETVIAFGERYREAKAAKGMVDFNDLEHYCLHILRHPDSVPGHMMPSDAAMEYREQFDEV 413 Query: 426 LLDEYQDTNSVQEEIVRLISRESPGNRFMVGDMKQSIYRFRLAEPGLFLDKYKSFGSAAG 485 LLDEYQDTNSVQE+IVRLISRE PGNRFMVGD+KQSIYRFRLAEPGLFLDKYK+F S G Sbjct: 414 LLDEYQDTNSVQEDIVRLISREMPGNRFMVGDVKQSIYRFRLAEPGLFLDKYKTFSSGTG 473 Query: 486 ---GGSVIDLARNFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGAHFPGAAEKG 542 G IDLARNFRSR+EVV+AVN++FRQIM+ +VAEI+YDERAELV GA FP G Sbjct: 474 TSQTGIRIDLARNFRSRMEVVDAVNLLFRQIMNESVAEIAYDERAELVCGASFPEQETNG 533 Query: 543 PDTYFAPELLLIDXXXXXXXXXXXXAEDGELPPQ-ENEAMESETAQLEARAIVRRISQMT 601 + PE+LLID + E Q E EA+E ETAQLEARAI R+I +MT Sbjct: 534 GANPYMPEMLLIDRAGKGPEEQSDESASEEDGVQLEAEALEMETAQLEARAIARKIREMT 593 Query: 602 GMSGGEPLMIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEELRLEGIPAYGDQNKGYF 661 G S G+PLM+YDK LK MRP YGD+VILLRSA +W PL++EELRLEGIPA+G+QNKGYF Sbjct: 594 GES-GKPLMVYDKGLKTMRPAGYGDMVILLRSAMVWAPLIIEELRLEGIPAFGEQNKGYF 652 Query: 662 QATEVEIALSLLQIVDNPRQDIPLAGVLRSPVVNLREEELAAVRLCSDGSFLDAVLAAAG 721 QATEVEI LSLLQ++DNPRQDIPLA VLRSP++ L EEE+A VRLC+ G++ DA+ AA Sbjct: 653 QATEVEIILSLLQVIDNPRQDIPLASVLRSPILGLSEEEMAQVRLCAKGTYYDALKAAVS 712 Query: 722 EQTE-----------IGDGSGGHHAFKXXXXXXXXXXXXXXXXXXGDVPSADHMAGKAAM 770 DG A D P + + Sbjct: 713 LSVAPPVMDPARPMGFVDGKWTPGAGLEGLAEAAAGHELVAGSHLSDAP----LTAEGHA 768 Query: 771 PEISGKLRKKLQVFLRQLEGWRTAAHQGSLSTLIWRIYTESGYLEWVGGLPGGFQRQNNL 830 EIS +L KL +F+ +L+ WR A QGSLS LIW IY+E+GYL+WVGGLPGG QRQ NL Sbjct: 769 IEISAELGAKLGLFMDRLQRWRQEARQGSLSDLIWGIYSETGYLDWVGGLPGGRQRQGNL 828 Query: 831 TALYDRAVQFENDTNARGLFRFLVFINRLRXXXXXXXXXXXXXXXXXXVRIMTIHKSKGL 890 TALYDRAVQ+E DT +RGLFRFL FI+RLR VR+MTIHKSKGL Sbjct: 829 TALYDRAVQYEQDTASRGLFRFLTFISRLRERGGDLGTAGGTESQGNAVRLMTIHKSKGL 888 Query: 891 EFPVVFLAGMAKPFNRQDLHSPFLMHKELGFGPRFVEPKTRVTYPTLPYLAISRRSRLEL 950 EFPVVF+AG++K FN+QDL++PFLMHKELGFGP+FV+ RV+YPTLP LAI RRS+LEL Sbjct: 889 EFPVVFVAGLSKNFNQQDLNAPFLMHKELGFGPKFVDEGMRVSYPTLPNLAIRRRSQLEL 948 Query: 951 LAEEMRVLYVGLTRPRDKMILVGTVRDLPRTLAGWSSVQGREQMLLEDHMLARGRSYLDW 1010 LAEEMRVLYV LTRP++KMILVGTV+DLP+ ++ W+ ++LL D++LARGRSYLDW Sbjct: 949 LAEEMRVLYVALTRPKEKMILVGTVKDLPKKVSAWAQADFNPELLLPDYVLARGRSYLDW 1008 Query: 1011 VGPALIRHPRAAILRKLAGADGPVSA-VLHGDASNWSISAVNAQEXXXXXXXXXXXTADR 1069 +GPA+IRHP A+ LR AG S+ L D S W S + Sbjct: 1009 IGPAVIRHPSASPLRGQAGLPEETSSRALAADRSQWIFSIETPESLAQGMTGMSDDVQAD 1068 Query: 1070 NEERQAVLEALRHGRRVP---------NGSAAREAEVTGRLKWVYPYAAASGIPAKTSVT 1120 +E R L ALR VP G+ + A + RL W Y Y A S I AKTSVT Sbjct: 1069 SENRMMKLNALRSLEPVPESAIAEAEEEGTDVQRASIDQRLSWSYRYEAVSQISAKTSVT 1128 Query: 1121 ELKSMLSMQEQPSYDLLEE-SLHGDAGLSLTRGAAGTDSLHLQRPKFMEKRGLSPSERGT 1179 E+K +L++Q+ PS DLLEE ++ + S+ A+ + +L L+RPKFME L+P+ERGT Sbjct: 1129 EMKKLLALQDSPSLDLLEERAVKRQSRESID--ASTSFTLSLRRPKFMESTKLTPAERGT 1186 Query: 1180 AYHTVMQHVPLEGVVD----RSVLEATIARLTRLAILTGEQAEAVEISDIEAFYSGEMGR 1235 YHT+MQH+PL+ + D + +E TI L I+TGEQA AVE ++I + + ++G+ Sbjct: 1187 VYHTIMQHLPLQRLEDAAEPTAEIEETIRYLVEKEIITGEQASAVEAAEISSLFDCDLGK 1246 Query: 1236 RLIGASWKRREQPFSYMVPAGEAYHGLEYXXXXXXXXXXXXXXXXF--GESVLIQGVIDC 1293 R++ A RE PFSY +PA EAY GL + E+VLIQGV+DC Sbjct: 1247 RVLSAEDVWREMPFSYALPAAEAYQGLAFLDPISEHSAQGLPEMELLRDETVLIQGVVDC 1306 Query: 1294 LFREEGRLILLDYKTDAVLEHQGGLETLKEKYRFQLELYSKALLDILGEPVSEIWLYFFD 1353 +FR GRL+LLDYKTD VLEH+GGL L ++YRFQL+LY+KAL DILGEPV E WLYFFD Sbjct: 1307 MFRHNGRLVLLDYKTDRVLEHRGGLTALADQYRFQLDLYAKALEDILGEPVHEKWLYFFD 1366 Query: 1354 GGHAVKL 1360 GGHAV++ Sbjct: 1367 GGHAVQV 1373 >B1DFQ6.1 B1DFQ6_9BACL Recombination helicase AddA Length = 1277 Score = 1129 bits (2919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 645/1377 (46%), Positives = 831/1377 (60%), Gaps = 134/1377 (9%) Query: 10 KPEGSLWSDDQWRAIAESGDDILVAAAAGSGKTAVLVERIIRKISNEENGFS-VDRLLVA 68 KPE S W+DDQWRAI G D+LVAAAAGSGKTAVLVERIIRKIS+ FS VDRLLVA Sbjct: 9 KPENSTWTDDQWRAIVTEGSDVLVAAAAGSGKTAVLVERIIRKISS----FSDVDRLLVA 64 Query: 69 TFTKAAAAEMRQRIREAXXXXXXXXXXXXXXXXXXXXXXRRQLALLGRASITTLHSFCLE 128 TFTKAAAAEM+ RIR A RRQLAL+ RASITTLHSFCL+ Sbjct: 65 TFTKAAAAEMKDRIRIALEKELERQPESEHL--------RRQLALMNRASITTLHSFCLD 116 Query: 129 VIRRYYQLIPIDPGFRILNEHEAEMMRQXXXXXXXXXKYGEVAGDGEDTVFVRLADWFSG 188 VIRRYY LI +DPGFRI NE E+E+MR KY +GD F+RLAD + G Sbjct: 117 VIRRYYPLIGLDPGFRIANETESELMRIDVLDQLFEEKYEGSSGDS--GAFLRLADRYGG 174 Query: 189 ERSDDAVHSLVQRLHDFARSHPWPAQWLRDTAADFSLPDTEALSRTPWVQSILADAKLTL 248 ER D+ ++ LVQ+L+DFA+SHPWP WLR TAA F + + E L +PWV S+ AD +L L Sbjct: 175 ERGDEPLYKLVQQLYDFAQSHPWPEHWLRQTAASFMVDNVEGLRSSPWVASLRADVELAL 234 Query: 249 DGAASQLRQGREIALQPGGPAPYADNLAADLEMVQALQEALEFRPWAELYDIFIEISFGK 308 GAAS L Q ++ +P GPAPYA DL +V L E + PW ++ F + FGK Sbjct: 235 SGAASLLNQAMQLTREPAGPAPYAATFEEDLAIVGGLAETVRMHPWEMWFESFQAVQFGK 294 Query: 309 LKACKKDSTDPGLQERVKELRDNVKKSLLELQKSLFGRPAEAFLGELHEAAPLMRELAET 368 LKA + D D +QE+ KELRD KK + L LFGR AE F EL E APLM L+E Sbjct: 295 LKAMRGDDYDKTMQEQAKELRDQAKKLISSLADELFGRSAEEFAWELQELAPLMAALSEL 354 Query: 369 VIEFGERYRIEKAGRGMVDFSDLEHYCLQILRHADSEPGHSLPSDAAMEYRDQFDEVLLD 428 VIEFG+RY K +G++DF DLEHYCL+ILR +S P + PS AA EY+ QFDE+LLD Sbjct: 355 VIEFGQRYEAAKRSKGLLDFGDLEHYCLRILRAPESTPELTTPSPAATEYQRQFDEILLD 414 Query: 429 EYQDTNSVQEEIVRLISRESPGNRFMVGDMKQSIYRFRLAEPGLFLDKYKSFGSAAGGGS 488 EYQDTN VQE IV LI+ GNRFMVGD+KQSIYRFRLAEP LF+ KYK++G+ G G Sbjct: 415 EYQDTNMVQEAIVSLIANPHAGNRFMVGDVKQSIYRFRLAEPNLFMSKYKNYGAPGGDGL 474 Query: 489 VIDLARNFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGAHFPGAAEKGPDTYFA 548 IDLARNFRSRLEVV+ VN +FR IM TVAE+ YD+RAELV GA +P G FA Sbjct: 475 RIDLARNFRSRLEVVDGVNDVFRAIMRETVAEMDYDKRAELVCGASYPEPDLPG---RFA 531 Query: 549 PELLLIDXXXXXXXXXXXXAEDGELPPQENE-------------AMESETAQLEARAIVR 595 EL +ID EDG + P +++ A E +TAQLEAR I R Sbjct: 532 VELAVIDKAGSSNE------EDGAVSPADSDDESEQGAGPAAESAEELQTAQLEARLIAR 585 Query: 596 RISQMTGMSGGEPLMIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEELRLEGIPAYGD 655 +I + E +YD + RP+ + DIVILLR+ + W P+++EEL+ GIPAY + Sbjct: 586 QIRSLL----DEGFRVYDGKKRESRPMEWRDIVILLRATQAWAPVIIEELQGAGIPAYAE 641 Query: 656 QNKGYFQATEVEIALSLLQIVDNPRQDIPLAGVLRSPVVNLREEELAAVRLCS-DGSFLD 714 + GYF ATEVE LSLL+++DNP QDIPLAG LRSP+ L EELA +R+ + ++ D Sbjct: 642 LSSGYFDATEVETILSLLRVIDNPYQDIPLAGTLRSPIFGLNAEELALIRIGAMQDTYYD 701 Query: 715 AVLAAAGEQTEIGDGSGGHHAFKXXXXXXXXXXXXXXXXXXGDVPSADHMAGKAAMPEIS 774 AVL AAG+ +P+ Sbjct: 702 AVLQAAGD---------------------------------------------LLLPD-- 714 Query: 775 GKLRKKLQVFLRQLEGWRTAAHQGSLSTLIWRIYTESGYLEWVGGLPGGFQRQNNLTALY 834 +LR+KL +FL +L+ WR A QGSL+ LIW IY E+GY ++ GGLPGG QRQ NL AL+ Sbjct: 715 -ELRRKLSLFLERLDRWRNDARQGSLADLIWSIYRETGYYDFAGGLPGGVQRQANLRALH 773 Query: 835 DRAVQFENDTNARGLFRFLVFINRLRXXXXXXXXXXXXXXXXXXVRIMTIHKSKGLEFPV 894 DRA Q+E T+ RGLFRFL F+ R+R VRIM+IHKSKGLEFPV Sbjct: 774 DRARQYEA-TSFRGLFRFLRFVERMRDSGGDLGTARALGEQENVVRIMSIHKSKGLEFPV 832 Query: 895 VFLAGMAKPFNRQDLHSPFLMHKELGFGPRFVEPKTRVTYPTLPYLAISRRSRLELLAEE 954 VF+AG+ K FN+QDL S FL HK+LGFGP++++P+ RV+YPTLP+L+I RR R+E+LAEE Sbjct: 833 VFVAGLGKNFNQQDLRSAFLKHKQLGFGPKYIDPEKRVSYPTLPFLSIRRRMRMEMLAEE 892 Query: 955 MRVLYVGLTRPRDKMILVGTVRDLPRTLAGWSSVQGREQMLLEDHMLARGRSYLDWVGPA 1014 MR+LYV LTRP++KM LVGTV D W S + + D L+ ++LDW+GP Sbjct: 893 MRILYVALTRPKEKMFLVGTVSDAAAKQRRWQSASD-AKGYISDFRLSSASTFLDWLGPL 951 Query: 1015 LIRHPRAAILRKLAGADGPVSAVLHGDAS--NWSISAVNAQEXXXXXXXXXXXTADRNEE 1072 AA +L P H D+ W V+A +R EE Sbjct: 952 A-----AAAFNQLPDETVPG----HEDSRLLQWRAGVVDA---AMLGLEAAIGVEERTEE 999 Query: 1073 RQAVLEALRHGRRVPN-GSAAREAEVTGRLKWVYPYAAASGIPAKTSVTELKSMLS---- 1127 QA + ++ + ++ E+ RL+W Y Y A++ + AKTSVTE+K + S Sbjct: 1000 DQAREDRMQGVLSLAQLDQVEQDEELRNRLEWRYGYRASTLVAAKTSVTEMKRLHSEAVE 1059 Query: 1128 MQEQPS----YDLLEESLHGDAGLSLTRGAAGTDSLHLQRPKFMEKRGLSPSERGTAYHT 1183 M E + D + D S G+ + L+RP+FME+ L+ +E+GT H Sbjct: 1060 MPEDSAALYPADTFSDRQQEDGKKS---SGGGSYTFRLRRPRFMEEAALTAAEKGTVSHL 1116 Query: 1184 VMQHVPLEGVVDRSVLEATIARLTRLAILTGEQAEAVEISDIEAFYSGEMGRRLIGASWK 1243 +MQH+PL G VD L + ++ + +LT QA+++++ + AF+ E+G+RL+ A W Sbjct: 1117 LMQHLPLAGDVDVDRLGSILSDMVSRKLLTARQADSIDLPAVAAFFDTEIGKRLVHAKWV 1176 Query: 1244 RREQPFSYMVPAGEAYHGLEYXXXXXXXXXXXXXXXXFGESVLIQGVIDCLFREEGRLIL 1303 RRE PFS M PA Y GL GE VLIQGVIDCLF +E ++L Sbjct: 1177 RREVPFSCMFPAQRVYPGL--------------AADMAGEPVLIQGVIDCLFEDENGIVL 1222 Query: 1304 LDYKTDAVLEHQGGLETLKEKYRFQLELYSKALLDILGEPVSEIWLYFFDGGHAVKL 1360 LDYKTD + Q E E++RFQLELY++A+ ++G+P++E ++FFDGG AVKL Sbjct: 1223 LDYKTDRIYMKQ--WEQAAERHRFQLELYAEAIESVIGQPIAESHVFFFDGGRAVKL 1277 >C5D6P7.1 C5D6P7_9BACI Recombination helicase AddA Length = 1244 Score = 973 bits (2514), Expect = 0.0, Method: Compositional matrix adjust. Identities = 565/1369 (41%), Positives = 780/1369 (56%), Gaps = 148/1369 (10%) Query: 9 PKPEGSLWSDDQWRAIAESGDDILVAAAAGSGKTAVLVERIIRKISNEENGFSVDRLLVA 68 PKP+ S W+D+QW+AI G DILVAAAAGSGKTAVLVERII+KI+ +E+ VDRLLV Sbjct: 7 PKPKESQWTDEQWKAIVADGQDILVAAAAGSGKTAVLVERIIQKITAKEDPIDVDRLLVV 66 Query: 69 TFTKAAAAEMRQRIREAXXXXXXXXXXXXXXXXXXXXXXRRQLALLGRASITTLHSFCLE 128 TFT A+AAEM+ RI EA RRQL+LL RASI+T+HSFCL+ Sbjct: 67 TFTNASAAEMKTRIAEAIERELDKQPNSLHL--------RRQLSLLNRASISTIHSFCLD 118 Query: 129 VIRRYYQLIPIDPGFRILNEHEAEMMRQXXXXXXXXXKYGEVAGDGEDTVFVRLADWFSG 188 VIR+YY LI IDP FRI ++ E E++++ +YG+ ++ +F + D ++G Sbjct: 119 VIRKYYYLIDIDPVFRIADDTEMELLKEEVMEELLEEEYGK----ADNELFFEVVDRYTG 174 Query: 189 ERSDDAVHSLVQRLHDFARSHPWPAQWLRDTAADFSLPDTEALSRTPWVQSILADAKLTL 248 +RSD + ++ +++F+RSHP +WL A + + + L++ P++ + ++ L Sbjct: 175 DRSDAELQEMILAIYEFSRSHPETYRWLDQLVAMYDIDEDTPLTQLPYISYLRKYVEMEL 234 Query: 249 DGAASQLRQGREIALQPGGPAPYADNLAADLEMVQALQEALEFRPWAELYDIFIEISFGK 308 A + + ++A PGGP P A+N DL+++ L EAL R W ELY+ +S + Sbjct: 235 AAAKRLIARALQLAHLPGGPLPRAENYRDDLQLIAHL-EALLDRSWDELYEAMKSLSLSR 293 Query: 309 LKACKKDSTDPGLQERVKELRDNVKKSLLELQKSLFGRPAEAFLGELHEAAPLMRELAET 368 LK+C+ D DP L E K LRD KK L L+ ++F +L + E P++ + Sbjct: 294 LKSCRGDEYDPQLVEEAKSLRDQAKKKLESLRDNVFSLRPTTWLRHMREMKPVVETIVRL 353 Query: 369 VIEFGERYRIEKAGRGMVDFSDLEHYCLQILRHADSEPGHSLPSDAAMEYRDQFDEVLLD 428 V +F E ++ K +G+VDFSDLEHYCLQILRH DS G LPSDAA++YR QF EVL+D Sbjct: 354 VKQFTEMFQARKREKGIVDFSDLEHYCLQILRHPDSTDGQWLPSDAALDYRAQFVEVLVD 413 Query: 429 EYQDTNSVQEEIVRLISR--ESPGNRFMVGDMKQSIYRFRLAEPGLFLDKYKSF-GSAAG 485 EYQDTN VQE I+RL+++ E GN FMVGD+KQSIYRFRLAEP LFL KYK F Sbjct: 414 EYQDTNMVQEAILRLVTKGNEHTGNLFMVGDVKQSIYRFRLAEPMLFLSKYKRFTADGKQ 473 Query: 486 GGSVIDLARNFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGA-HFPGAAEKGPD 544 G IDL+ NFRSR E+++ N IF+QIM TV E+ YDE AEL YGA +P + Sbjct: 474 SGMKIDLSNNFRSRAEILHGTNFIFKQIMSETVGEMEYDEAAELKYGAVDYPDNEQA--- 530 Query: 545 TYFAPELLLIDXXXXXXXXXXXXAEDGELPPQENEAMESETAQLEARAIVRRISQMTGMS 604 PEL++ID E GE + A AQLEAR + ++I ++ Sbjct: 531 ---VPELIIIDRNSKDDE------ETGEFDTNDLAA-----AQLEARMMAKKIKEIV--- 573 Query: 605 GGEPLMIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEELRLEGIPAYGDQNKGYFQAT 664 EP +YD+ K MR +Y DIVILLRS T +M EE R +GIP Y D + GYFQAT Sbjct: 574 -SEPFHVYDRKAKRMRRAMYRDIVILLRSMTAATQIM-EEFRAQGIPVYADLSSGYFQAT 631 Query: 665 EVEIALSLLQIVDNPRQDIPLAGVLRSPVVNLREEELAAVRLC-SDGSFLDAVLAAAGEQ 723 E+ I LSLL+++DNP QDIPLA VLRSP+V L E ELA +R+ G+F +A+++ Sbjct: 632 EISIMLSLLKVIDNPYQDIPLASVLRSPIVGLNENELALIRIHEKKGTFYEAMVS----- 686 Query: 724 TEIGDGSGGHHAFKXXXXXXXXXXXXXXXXXXGDVPSADHMAGKAAMPEISGKLRKKLQV 783 K + L++KL++ Sbjct: 687 ----------------------------------------FLTKTVDDKEEAALQQKLRL 706 Query: 784 FLRQLEGWRTAAHQGSLSTLIWRIYTESGYLEWVGGLPGGFQRQNNLTALYDRAVQFEND 843 F QL+ WRT A Q SL+ +IW++Y ++ + ++VGGLPGG QRQ NL ALYDRA Q+E Sbjct: 707 FYEQLKHWRTMARQRSLADIIWQLYRDTQFYDFVGGLPGGKQRQANLRALYDRARQYET- 765 Query: 844 TNARGLFRFLVFINRLRXXXXXXXXXXXXXXXXXXVRIMTIHKSKGLEFPVVFLAGMAKP 903 T+ RGLFRFL FI RL+ VRIMTIH SKGLEFP+VF+AG+++P Sbjct: 766 TSFRGLFRFLRFIERLQNRGDDLGAARSLGEQEDVVRIMTIHSSKGLEFPIVFIAGLSRP 825 Query: 904 FNRQDLHSPFLMHKELGFGPRFVEPKTRVTYPTLPYLAISRRSRLELLAEEMRVLYVGLT 963 FN +DL+ +L+ KELGF RFV+PK R++YPTLP +AI ++ RL+ LAEEMR+LYV LT Sbjct: 826 FNTRDLYESYLLDKELGFAARFVDPKLRISYPTLPQIAIKQKKRLDFLAEEMRILYVALT 885 Query: 964 RPRDKMILVGTVRDLPRTLAGWSSVQGREQMLLEDHMLARGRSYLDWVGPALIRHPRAAI 1023 R ++K+ L+ V+D + +A W S E+ LL D + A R YLDW+G ALIRH Sbjct: 886 RAKEKLYLIAAVKDAEKEVAKWKSTAMEEEWLLPDDVRASARCYLDWIGRALIRHRDGRN 945 Query: 1024 LRKLAGADGPVSAVLHGDASN---WSISAVNAQEXXXXXXXXXXXTADRNEER--QAVLE 1078 G +S V AS+ W + + A + D+ E+ + ++ Sbjct: 946 F-------GDLSYVCEKIASHPSIWHMEVIPASQ---------LYDVDKEAEQMDEQIIT 989 Query: 1079 ALRHGRRVPNGSAAREAEVTGRLKWVYPYAAASGIPAKTSVTELKSMLSMQEQPSYDLLE 1138 AL+ G RVPN +E EV L W Y Y + AK +V+ELK Sbjct: 990 ALKRGERVPNAGEWKE-EVDRLLSWEYAYEKEMLVRAKQTVSELKR-------------H 1035 Query: 1139 ESLHGDAGLSLTRGAAGTDSLHLQRPKFMEKRGLSPSERGTAYHTVMQHVPLEGVVDRSV 1198 + G+ + + T +RP FM ++ L+P+E+GTA H VMQ V L + Sbjct: 1036 REIFGENADRMPLHSFSTPL--FERPMFMREKTLTPAEKGTAMHIVMQQVDLTAPITEET 1093 Query: 1199 LEATIARLTRLAILTGEQAEAVEISDIEAFYSGEMGRRLIGASWKRREQPFSYMVPAGEA 1258 + IA+L ++ +LT EQAEA++IS + AF+ E+G+RL A RE PFS +PA E Sbjct: 1094 VREQIAKLVQMELLTHEQAEAIDISSVVAFFDTEIGKRLRAADEVYREVPFSLALPAKEV 1153 Query: 1259 YHGLEYXXXXXXXXXXXXXXXXFGE--SVLIQGVIDCLFREEGRLILLDYKTDAVLEHQG 1316 Y GE L+QGVIDCLF +E L+L+D+KTD V Sbjct: 1154 YED------------------GVGEERKALVQGVIDCLFADEKGLVLIDFKTDTVTNRFA 1195 Query: 1317 G-----LETLKEKYRFQLELYSKALLDILGEPVSEIWLYFFDGGHAVKL 1360 G + + +Y+ Q++LY +A+ I V E +LY FDG H + + Sbjct: 1196 GGWHEAKQVIISRYKTQMQLYRRAVEQIWKINVDECYLYLFDGSHLISI 1244 >Q2B975.1 Q2B975_9BACI AddA Length = 1254 Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust. Identities = 565/1384 (40%), Positives = 784/1384 (56%), Gaps = 160/1384 (11%) Query: 4 RAEIEPKPEGSLWSDDQWRAIAESGDDILVAAAAGSGKTAVLVERIIRKISNEENGFSVD 63 +A I PKPEG+ W+DDQW+AI SG DILVAAAAGSGKTAVLVERII KI + E +VD Sbjct: 3 KAIIPPKPEGAAWTDDQWKAIMASGQDILVAAAAGSGKTAVLVERIINKIVSREEPVNVD 62 Query: 64 RLLVATFTKAAAAEMRQRIREAXXXXXXXXXXXXXXXXXXXXXXRRQLALLGRASITTLH 123 LLV TFT A+AAEMR RI EA R+QL+LL RASI+TLH Sbjct: 63 ELLVVTFTNASAAEMRHRIGEA--------LEKAINRDPQSAHLRKQLSLLSRASISTLH 114 Query: 124 SFCLEVIRRYYQLIPIDPGFRILNEHEAEMMRQXXXXXXXXXKYGEVAGDGEDTVFVRLA 183 SFCLEVIR+YY LI IDPGFRI +E E +++R +YG+ + ED F RL Sbjct: 115 SFCLEVIRKYYYLIDIDPGFRIADETEGQLLRDEVLEELFEEEYGK--ENNED--FYRLV 170 Query: 184 DWFSGERSDDAVHSLVQRLHDFARSHPWPAQWLRDTAADFSLPDTEALSRTPWVQSILAD 243 D F+ +RSD A+ +++ L+DFARS+P P Q+L + + + L P++ S+L D Sbjct: 171 DAFTSDRSDTALQDIIRELYDFARSNPAPDQYLDKISDMYEVSSDAKLEELPFMSSVLFD 230 Query: 244 AKLTLDGAASQLRQGREIALQPGGPAPYADNLAADLEMVQALQEALEFRPWAELYDIFIE 303 L L+GA L E+A PGGPAP A+N D+ V+ L A W+ L + Sbjct: 231 IGLQLEGARQLLENALELAKTPGGPAPRAENYMDDIRAVETLI-AANNDSWSSLNEAMQL 289 Query: 304 ISFGKLKACKKDSTDPGLQERVKELRDNVKKSLLELQKSLFGRPAEAFLGELHEAAPLMR 363 SFG+ K CK D DP L ++ ++ RD KK + +LQ F R E+F+ ++ E P + Sbjct: 290 WSFGRAKNCKGDEYDPDLVKQAQKYRDKAKKMIQDLQAEFFSRRPESFIRDIGEMKPHID 349 Query: 364 ELAETVIEFGERYRIEKAGRGMVDFSDLEHYCLQILRHADS-EPGHSLPSDAAMEYRDQF 422 L V F E++ K+ +G+VDF+DLEH+CL+IL + + G LPS+ A+ YRD F Sbjct: 350 VLVRLVRSFSEKFNSVKSEKGLVDFADLEHFCLEILSDPSARKEGAILPSEPALTYRDHF 409 Query: 423 DEVLLDEYQDTNSVQEEIVRLISR--ESPGNRFMVGDMKQSIYRFRLAEPGLFLDKYKSF 480 EVL+DEYQDTN VQE I++L+++ E GN FMVGD+KQSIYRFRLAEP LFL KY F Sbjct: 410 REVLVDEYQDTNMVQEAILQLVTKEGEETGNLFMVGDVKQSIYRFRLAEPNLFLGKYTRF 469 Query: 481 G-SAAGGGSVIDLARNFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGAHFPGAA 539 G IDLARNFRSR EV++ N +F+Q+M V EI YD+ AELV GA +P Sbjct: 470 TVDGEKTGLKIDLARNFRSRKEVLDGTNFLFKQVMGKKVGEIDYDQAAELVKGASYP--- 526 Query: 540 EKGPDTYFAPELLLIDXXXXXXXXXXXXAEDGELPPQENEAMES---------ETAQLEA 590 D + EL LID DG+ + EA E+ E +Q EA Sbjct: 527 ---EDLPYPVELHLIDL-------------DGQEKAESGEADETDAGYDLEDLEQSQHEA 570 Query: 591 RAIVRRISQMTGMSGGEPLMIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEELRLEGI 650 R + +I +M +S G+ +Y+ RP++Y DIVILLRS W P ++EE + +GI Sbjct: 571 RLMAEKIKEM--LSSGKK--VYEPKSGAYRPLMYRDIVILLRSM-TWAPQIMEEFKKQGI 625 Query: 651 PAYGDQNKGYFQATEVEIALSLLQIVDNPRQDIPLAGVLRSPVVNLREEELAAVRLC-SD 709 P Y + + GYF+ATE+ I +SLL+++DNP QDIPLA VLRSP+V L EEELA +R+ Sbjct: 626 PIYANLSSGYFEATEITIMMSLLKVIDNPHQDIPLASVLRSPIVGLNEEELAQIRIADKK 685 Query: 710 GSFLDAVLAAAGEQTEIGDGSGGHHAFKXXXXXXXXXXXXXXXXXXGDVPSADHMAGKAA 769 GS+ +A + A E + GD Sbjct: 686 GSYYEA-MKAFCETKKSGD----------------------------------------- 703 Query: 770 MPEISGKLRKKLQVFLRQLEGWRTAAHQGSLSTLIWRIYTESGYLEWVGGLPGGFQRQNN 829 L K++ F + WR+ A +G LS LIW++Y ++ + ++ GG+PGG QRQ N Sbjct: 704 -------LYDKVKPFFLDIAEWRSMARKGGLSELIWQLYRDTHFYDFAGGMPGGKQRQAN 756 Query: 830 LTALYDRAVQFENDTNARGLFRFLVFINRLRXXXXXXXXXXXXXXXXXXVRIMTIHKSKG 889 L ALYDRA Q+E +T+ RGLFRFL FI R+R VR+MTIH SKG Sbjct: 757 LRALYDRARQYE-ETSFRGLFRFLRFIERMRERGDDLGAARALGEQEDVVRMMTIHSSKG 815 Query: 890 LEFPVVFLAGMAKPFNRQDLHSPFLMHKELGFGPRFVEPKTRVTYPTLPYLAISRRSRLE 949 LEFPVVF AG+A+ FN DL +L+ KE GF ++V P+ R++YP+LP LA R+ ++E Sbjct: 816 LEFPVVFAAGLARQFNTMDLKKTYLLDKEYGFAAKYVNPEKRISYPSLPQLAFKRKKKME 875 Query: 950 LLAEEMRVLYVGLTRPRDKMILVGTVRDLPRTLAGWSSVQGREQMLLEDHMLARGRSYLD 1009 +LAEEMRVLYV LTR ++ + LV +V++ + LAGW ++ LL+++ A SYLD Sbjct: 876 MLAEEMRVLYVALTRAKEHLFLVASVKNADKKLAGWQQGAKKDSWLLDEYDRAAASSYLD 935 Query: 1010 WVGPALIRHPRAAILRK-----LAGADGPVSAVLHGDASNWSISAVNAQEXXXXXXXXXX 1064 W+G ALIRH LR AG+ G ++ LH S+WS+ A Sbjct: 936 WIGSALIRHRDGEPLRSGQEDAAAGSQGEIA--LH--PSSWSVEVRQA-------AVTPA 984 Query: 1065 XTADRNEERQAVLEALRHGRRVPNGSAAREAEVTGRLKWVYPYAAASGIPAKTSVTELKS 1124 D +E + ++++ G+ VP S +E ++ L W Y Y +A+ +K SV+E+K Sbjct: 985 QDEDSDEAGEQWIDSVYEGKPVPAESPFKE-KIKNSLSWQYSYPSAASHKSKQSVSEMKR 1043 Query: 1125 MLSMQEQPSYDLLEESLHGDAGLSLTRGAAGTDSLHLQRPKFMEKRGLSPSERGTAYHTV 1184 ++++ S G L R L RP+FM+++ ++P+ERGTA H V Sbjct: 1044 QSEVKDEES------------GSDLVRNLKKP---ILNRPRFMQEKSMTPAERGTAMHMV 1088 Query: 1185 MQHVPLEGVVDRSVLEATIARLTRLAILTGEQAEAVEISDIEAFYSGEMGRRLIGASWKR 1244 MQH L V +E +A + +LT EQ + ++ + I F+ +G+R+ A+ + Sbjct: 1089 MQHADLSNPVTEESIERQLAEMKDRELLTDEQVQVIDPALIAGFFQSPLGQRMRKAARIQ 1148 Query: 1245 REQPFSYMVPAGEAY---HGLEYXXXXXXXXXXXXXXXXFGESVLIQGVIDCLFREEGRL 1301 RE PF+ +PA AY G E E VL+QG+IDC+F +E Sbjct: 1149 REVPFNLALPARTAYPDWKGTE-------------------EPVLVQGIIDCIFEDEHGT 1189 Query: 1302 ILLDYKTDAVL-EHQGGLE----TLKEKYRFQLELYSKALLDILGEPVSEIWLYFFDGGH 1356 +LLDYK+D++ + GG E LK +Y Q+ LY+KA I +PV E +L+FFDGGH Sbjct: 1190 VLLDYKSDSIHGRYTGGFEEAMPVLKRRYDVQISLYAKAYEAITKDPVDERYLFFFDGGH 1249 Query: 1357 AVKL 1360 +KL Sbjct: 1250 ILKL 1253 >C3J2Q1.1 C3J2Q1_9BACI Recombination helicase AddA Length = 1242 Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust. Identities = 574/1366 (42%), Positives = 776/1366 (56%), Gaps = 137/1366 (10%) Query: 5 AEIEPKPEGSLWSDDQWRAIAESGDDILVAAAAGSGKTAVLVERIIRKISNEENGFSVDR 64 A I PKP GS W+D+QW+AIA G DILVAAAAGSGKTAVLVERII+K++ EE +DR Sbjct: 3 ATIRPKPAGSRWTDEQWKAIAAGGRDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDR 62 Query: 65 LLVATFTKAAAAEMRQRIREAXXXXXXXXXXXXXXXXXXXXXXRRQLALLGRASITTLHS 124 LLV TFT AAAAEM+ RI EA RRQL+LL RA+I+TLHS Sbjct: 63 LLVVTFTNAAAAEMKARIGEALERELAKRPHSLHL--------RRQLSLLPRAAISTLHS 114 Query: 125 FCLEVIRRYYQLIPIDPGFRILNEHEAEMMRQXXXXXXXXXKYGEVAGDGEDTVFVRLAD 184 FCL+VIR+YY L+ +DP FRI +E E E++++ +YG+ ++ F + D Sbjct: 115 FCLDVIRKYYYLLDLDPSFRIADETEIELLKEDVLEELLEEEYGK----PDNERFFAVVD 170 Query: 185 WFSGERSDDAVHSLVQRLHDFARSHPWPAQWLRDTAADFSLPDTEALSRTPWVQSILADA 244 ++G+RSD + ++ L++F+RSHP P +WL + +++ + + P + I A Sbjct: 171 AYTGDRSDAELQEMIVALYEFSRSHPEPDEWLAGLTSMYNVDERTDIKTLPAARYIAQHA 230 Query: 245 KLTLDGAASQLRQGREIALQPGGPAPYADNLAADLEMVQALQEALEFRPWAELYDIFIEI 304 + L A +R+ E+A +PGGP PYA L DLE + L+ L W L+ + Sbjct: 231 AMELAAAKRLIRRALELAEEPGGPRPYAARLREDLERIAELEVHLS-GTWDGLHHALKAL 289 Query: 305 SFGKLKACKKDSTDPGLQERVKELRDNVKKSLLELQKSLFGRPAEAFLGELHEAAPLMRE 364 SFG+L AC+ D L + K LRD KK + L+ ++F +L + E P++ Sbjct: 290 SFGRLPACRGKDYDERLIDEAKSLRDQAKKKVEALRDNVFSLDPSVWLRHMREMKPIVET 349 Query: 365 LAETVIEFGERYRIEKAGRGMVDFSDLEHYCLQILRHADSEPGHSLPSDAAMEYRDQFDE 424 +A V F ++ K +G+VDFSDLEHYCL ILR D E G S PS AA+EY+ QFDE Sbjct: 350 IANLVRRFAVMFQAAKREKGIVDFSDLEHYCLHILRRRDPETGESQPSSAALEYQAQFDE 409 Query: 425 VLLDEYQDTNSVQEEIVRLISR--ESPGNRFMVGDMKQSIYRFRLAEPGLFLDKYKSFGS 482 VL+DEYQDTN VQE I++L+ + E GN FMVGD+KQSIYRFRLAEP LFLDKYK F + Sbjct: 410 VLVDEYQDTNLVQEAILQLVKKGSERTGNLFMVGDVKQSIYRFRLAEPMLFLDKYKRF-T 468 Query: 483 AAG--GGSVIDLARNFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGAHFPGAAE 540 A G GG IDLA NFRSR EV++ N +F Q+M TV E+ YDE A+L YGA +P Sbjct: 469 ADGEEGGMKIDLASNFRSRREVLDGTNFLFAQLMGETVGEMVYDEAAQLKYGADYP---- 524 Query: 541 KGPDTYFAPELLLIDXXXXXXXXXXXXAEDGELPPQENEAMESETAQLEARAIVRRISQM 600 +G D APE+++I+ E EA E E A+LEAR + ++I ++ Sbjct: 525 EGEDA--APEVMIINRQRAAEE-------------DEEEAAEWEAAELEARLMAKKIKEI 569 Query: 601 TGMSGGEPLMIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEELRLEGIPAYGDQNKGY 660 P +YD++ R +Y DIVIL+RS P M+E+L+ +GIPA D + GY Sbjct: 570 VSA----PFYVYDRSSGQPRRAMYRDIVILVRSM-TNAPQMIEQLQAQGIPAAADLSSGY 624 Query: 661 FQATEVEIALSLLQIVDNPRQDIPLAGVLRSPVVNLREEELAAVRLCS-DGSFLDAVLAA 719 FQATE+ I LSLL+++DNP QDIPLA VLRSP+ + E ELA +RL G+F +A+ + Sbjct: 625 FQATEISIMLSLLKVIDNPHQDIPLAAVLRSPLFHFDENELAMIRLADPKGTFYEALCSF 684 Query: 720 AGEQTEIGDGSGGHHAFKXXXXXXXXXXXXXXXXXXGDVPSADHMAGKAAMPEISGKLRK 779 + E + + + Sbjct: 685 RQKPAETKEEANAQ---------------------------------------------R 699 Query: 780 KLQVFLRQLEGWRTAAHQGSLSTLIWRIYTESGYLEWVGGLPGGFQRQNNLTALYDRAVQ 839 K FL +LEGWRT A + SL+ LIW++Y ++ + ++VG LPGG QRQ NL ALYDRA Q Sbjct: 700 KAAAFLERLEGWRTMARRRSLADLIWQLYRDTQFYDFVGALPGGRQRQANLRALYDRARQ 759 Query: 840 FENDTNARGLFRFLVFINRLRXXXXXXXXXXXXXXXXXXVRIMTIHKSKGLEFPVVFLAG 899 +E+ T+ RGLFRFL FI RL+ VRIMTIH SKGLEFP+VFLAG Sbjct: 760 YES-TSFRGLFRFLRFIERLQERGDDLGAARPLGEQEDVVRIMTIHSSKGLEFPIVFLAG 818 Query: 900 MAKPFNRQDLHSPFLMHKELGFGPRFVEPKTRVTYPTLPYLAISRRSRLELLAEEMRVLY 959 +A+ F+ +DLH P+L+ KELGF RFV P+ R++YPTLP LAI + RLELLAEEMR+LY Sbjct: 819 LARSFHTRDLHHPYLLDKELGFAARFVHPRLRISYPTLPLLAIQTKKRLELLAEEMRILY 878 Query: 960 VGLTRPRDKMILVGTVRDLPRTLAGWSSVQGREQMLLEDHMLARGRSYLDWVGPALIRHP 1019 V LTR ++K+ L+ +V D + + W S LL D + A RSYLDW+G ALIRH Sbjct: 879 VALTRAKEKLYLLASVNDAAKEIEKWKSAASERGWLLPDDVRASARSYLDWIGRALIRHR 938 Query: 1020 RAAILRKLAGADGPVSAVLHGDASNWSISAVNAQEXXXXXXXXXXXTADRNEERQAVLEA 1079 LAG P H S W ++ V A + A R E VL A Sbjct: 939 DGG---ALAGTKAPEEVASH--PSVWRVAIVPAAD-------LRGQEAAREEMDGGVLLA 986 Query: 1080 LRHGRRVPNGSAAREAEVTGRLKWVYPYAAASGIPAKTSVTELKSMLSMQEQPSYDLLEE 1139 L GR VP G +E E RL W Y Y + + AK SV+ELK + Sbjct: 987 LEQGRPVPVGGGWQE-EAKRRLLWRYSYEKETAVRAKQSVSELKE-------------QR 1032 Query: 1140 SLHGDAGLSLTRGAAGTDSLHLQRPKFMEKRGLSPSERGTAYHTVMQHVPLEGVVDRSVL 1199 +L G+ R GT + RP+FM+++ L+P+E+GTA H VM+H+ L+ +D S + Sbjct: 1033 ALFGEQA-DEWRPRQGTAPV-FSRPRFMQEKTLTPAEKGTALHVVMRHLDLQAPLDESSI 1090 Query: 1200 EATIARLTRLAILTGEQAEAVEISDIEAFYSGEMGRRLIGASWKRREQPFSYMVPAGEAY 1259 + I RL +L+ EQAEAV+ + I AF++ ++GRRL A RE PFS + A E Y Sbjct: 1091 RSQIVRLVEKELLSAEQAEAVDPAAIAAFFTADLGRRLCAAREVHREVPFSLGLKAAELY 1150 Query: 1260 HGLEYXXXXXXXXXXXXXXXXFGESVLIQGVIDCLFREEGRLILLDYKTDAVLEHQGGLE 1319 G G VL+QGVIDC+F +E +++DYKTD V+ G + Sbjct: 1151 GG---------------EGTESGRRVLVQGVIDCVFADECGYVMIDYKTDEVVHRFAGQK 1195 Query: 1320 T-----LKEKYRFQLELYSKALLDILGEPVSEIWLYFFDGGHAVKL 1360 L +Y Q+ LY +A+ I PV+E +LY FDGG V + Sbjct: 1196 EEAARFLLGRYGTQMRLYRRAIEQIWRAPVAECYLYSFDGGFVVAV 1241 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 7,395,750,379 Number of extensions: 292540666 Number of successful extensions: 750656 Number of sequences better than 1.0e-05: 1639 Number of HSP's gapped: 750819 Number of HSP's successfully gapped: 2215 Length of query: 1360 Length of database: 3,060,696,203 Length adjustment: 148 Effective length of query: 1212 Effective length of database: 1,666,385,983 Effective search space: 2019659811396 Effective search space used: 2019659811396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 138 (57.8 bits)