BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0423.0002.p (393 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG23.1 B3KG23_9BACI Nuclease SbcCD, D subunit 590 e-166 C3J2Q2.1 C3J2Q2_9BACI Nuclease SbcCD, D subunit 419 e-115 B7YBE2.1 B7YBE2_9BACI Nuclease SbcCD, D subunit 419 e-115 Q5L262.1 Q5L262_GEOKA DNA repair exonuclease 418 e-115 C5D6P8.1 C5D6P8_9BACI Nuclease SbcCD, D subunit 417 e-114 >B3KG23.1 B3KG23_9BACI Nuclease SbcCD, D subunit Length = 394 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 285/370 (77%), Positives = 321/370 (86%) Query: 1 MRILHTGDWHLGRTLEGRSRQKEQEQFIDELVEIADAAQADLILMAGDVYDSVNPPAAAE 60 MRILHTGDWHLGRTLEGRSR EQE+F+DELV++AD QADLILMAGDVYDSVNPPA+AE Sbjct: 1 MRILHTGDWHLGRTLEGRSRLAEQERFLDELVKLADDQQADLILMAGDVYDSVNPPASAE 60 Query: 61 QLFYDAAARLTADGRPLVVISGNHDQPERVASVSPLVRRQGIALVGMPTSEPVTVHAART 120 QLFY+AAARLT GRP+VVI+GNHDQPERVASV+PLV +GI L+G P ++ VTV ART Sbjct: 61 QLFYEAAARLTEGGRPMVVIAGNHDQPERVASVTPLVAARGITLIGTPIADAVTVATART 120 Query: 121 GEVAKIAALPYPSEARLGELLAGDAGEDELRLAYSARVGRLMNLLGREFTPQTVNLAMSH 180 GE AKIAALPYPSEARL ELL+ D ED+LR AYS RVG+LM ++ REF+PQTVNLAMSH Sbjct: 121 GETAKIAALPYPSEARLNELLSVDGDEDQLRRAYSERVGKLMRMMAREFSPQTVNLAMSH 180 Query: 181 IYVLGGVESDSERPIQVGGAYTVDPSALSCGAQYTALGHLHRAQRVKGDSMIRYSGSPLA 240 IYVLGGVESDSERPIQVGGAYTVDPSAL+ GA YTALGHLHR+Q VKGD MIRYSGSPLA Sbjct: 181 IYVLGGVESDSERPIQVGGAYTVDPSALAVGAAYTALGHLHRSQAVKGDGMIRYSGSPLA 240 Query: 241 YSFSEAGQAKSVALIEVAPGGEPSFEEIYLRCGRPLVNWKSSGGLQEVYGWLDEGRDATA 300 YSFSEAGQAKSV +++V+PGG P EE++L GRPLV WK+ GGL EVY WLDEGRD A Sbjct: 241 YSFSEAGQAKSVTMVDVSPGGSPVIEELFLSSGRPLVRWKAKGGLDEVYRWLDEGRDPEA 300 Query: 301 FIDLELRLTEAMSLNDIQRLRKSREGIIHIRPVYPQMEQELEEMARSRMPVQELFRRFYQ 360 FIDLE+ LTEAM L DIQRLRKSR+GI+HIRPVYP+ME E RSR+P+ +LFR+FYQ Sbjct: 301 FIDLEVSLTEAMGLADIQRLRKSRDGIVHIRPVYPEMEALELESERSRLPLPDLFRKFYQ 360 Query: 361 RQTGGAEPED 370 RQTGGAEPED Sbjct: 361 RQTGGAEPED 370 >C3J2Q2.1 C3J2Q2_9BACI Nuclease SbcCD, D subunit Length = 392 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 204/372 (54%), Positives = 262/372 (70%), Gaps = 2/372 (0%) Query: 1 MRILHTGDWHLGRTLEGRSRQKEQEQFIDELVEIADAAQADLILMAGDVYDSVNPPAAAE 60 MRILHT DWH GRTLEGRSR EQE F+DELVEI Q D+IL+AGDV+DSVNPPAAAE Sbjct: 1 MRILHTADWHFGRTLEGRSRMAEQEAFVDELVEIVKKEQIDIILVAGDVFDSVNPPAAAE 60 Query: 61 QLFYDAAARLTADGR-PLVVISGNHDQPERVASVSPLVRRQGIALVGMPTSEPVTVHAAR 119 QLFY++ ARL+ GR P+ VISGNHD P+R+++ L+ I L G P + + Sbjct: 61 QLFYESLARLSDKGRRPVAVISGNHDHPDRISAARTLMCAHNIFLFGRPQAAVCRIDVPS 120 Query: 120 TGEVAKIAALPYPSEARLGELLAGDAGEDELRLAYSARVGRLMNLLGREFTPQTVNLAMS 179 GE +A L YPSE+RL ELL+ D E +R Y R+ L+ + FT +TVN+AMS Sbjct: 121 CGETMMLAPLAYPSESRLAELLSSDCKETTMRDRYDDRIRALLAAMAASFTAETVNIAMS 180 Query: 180 HIYVLGGVESDSERPIQVGGAYTVDPSALSCGAQYTALGHLHRAQRVK-GDSMIRYSGSP 238 H+YV GG SDSERPI+VGGAYTV +L AQY ALGHLHR Q VK + RYSGSP Sbjct: 181 HLYVAGGRTSDSERPIEVGGAYTVAAESLPKAAQYVALGHLHRPQDVKQAKTAARYSGSP 240 Query: 239 LAYSFSEAGQAKSVALIEVAPGGEPSFEEIYLRCGRPLVNWKSSGGLQEVYGWLDEGRDA 298 LAYSFSEAGQAKSV +++V PGG EI L G+PL+ WK++ GL +VY W +EGRD Sbjct: 241 LAYSFSEAGQAKSVTVVDVHPGGAAKVAEIPLAAGKPLIRWKATEGLAQVYRWCEEGRDR 300 Query: 299 TAFIDLELRLTEAMSLNDIQRLRKSREGIIHIRPVYPQMEQELEEMARSRMPVQELFRRF 358 +++IDLE+ +TE++++ +I RLRK G +HIRPV P +E+ EM+R + ++E+F RF Sbjct: 301 SSWIDLEIHVTESLTMEEIDRLRKLHPGFVHIRPVLPNRAEEMMEMSREPLSLEEMFHRF 360 Query: 359 YQRQTGGAEPED 370 Y+RQTGG P++ Sbjct: 361 YERQTGGQTPDE 372 >B7YBE2.1 B7YBE2_9BACI Nuclease SbcCD, D subunit Length = 392 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 204/372 (54%), Positives = 262/372 (70%), Gaps = 2/372 (0%) Query: 1 MRILHTGDWHLGRTLEGRSRQKEQEQFIDELVEIADAAQADLILMAGDVYDSVNPPAAAE 60 MRILHT DWH GRTLEGRSR EQE F+DELVEI Q D+IL+AGDV+DSVNPPAAAE Sbjct: 1 MRILHTADWHFGRTLEGRSRMAEQEAFVDELVEIVKKEQIDIILVAGDVFDSVNPPAAAE 60 Query: 61 QLFYDAAARLTADGR-PLVVISGNHDQPERVASVSPLVRRQGIALVGMPTSEPVTVHAAR 119 QLFY++ ARL+ GR P+ VISGNHD P+R+++ L+ I L G P + + Sbjct: 61 QLFYESLARLSDKGRRPVAVISGNHDHPDRISAARTLMCAHNIFLFGRPQAAVCRIDVPS 120 Query: 120 TGEVAKIAALPYPSEARLGELLAGDAGEDELRLAYSARVGRLMNLLGREFTPQTVNLAMS 179 GE +A L YPSE+RL ELL+ D E +R Y R+ L+ + FT +TVN+AMS Sbjct: 121 CGETMMLAPLAYPSESRLAELLSSDCKETTMRDRYDDRIRALLAAMAASFTAETVNIAMS 180 Query: 180 HIYVLGGVESDSERPIQVGGAYTVDPSALSCGAQYTALGHLHRAQRVK-GDSMIRYSGSP 238 H+YV GG SDSERPI+VGGAYTV +L AQY ALGHLHR Q VK + RYSGSP Sbjct: 181 HLYVAGGRTSDSERPIEVGGAYTVAAESLPKAAQYVALGHLHRPQDVKQAKTAARYSGSP 240 Query: 239 LAYSFSEAGQAKSVALIEVAPGGEPSFEEIYLRCGRPLVNWKSSGGLQEVYGWLDEGRDA 298 LAYSFSEAGQAKSV +++V PGG EI L G+PL+ WK++ GL +VY W +EGRD Sbjct: 241 LAYSFSEAGQAKSVTVVDVHPGGAAKVAEIPLAAGKPLIRWKATEGLAQVYRWCEEGRDR 300 Query: 299 TAFIDLELRLTEAMSLNDIQRLRKSREGIIHIRPVYPQMEQELEEMARSRMPVQELFRRF 358 +++IDLE+ +TE++++ +I RLRK G +HIRPV P +E+ EM+R + ++E+F RF Sbjct: 301 SSWIDLEIHVTESLTMEEIDRLRKLHPGFVHIRPVLPNRAEEMMEMSREPLSLEEMFHRF 360 Query: 359 YQRQTGGAEPED 370 Y+RQTGG P++ Sbjct: 361 YERQTGGQTPDE 372 >Q5L262.1 Q5L262_GEOKA DNA repair exonuclease Length = 392 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 204/372 (54%), Positives = 262/372 (70%), Gaps = 2/372 (0%) Query: 1 MRILHTGDWHLGRTLEGRSRQKEQEQFIDELVEIADAAQADLILMAGDVYDSVNPPAAAE 60 MRILHT DWH GRTLEGRSR EQE F+DELVEI Q D+IL+AGDV+DSVNPPAAAE Sbjct: 1 MRILHTADWHFGRTLEGRSRMAEQEAFVDELVEIVKKEQIDIILVAGDVFDSVNPPAAAE 60 Query: 61 QLFYDAAARLTADGR-PLVVISGNHDQPERVASVSPLVRRQGIALVGMPTSEPVTVHAAR 119 QLFY++ ARL+ GR P+ VISGNHD P+R+++ L+ I L G P + + Sbjct: 61 QLFYESLARLSDKGRRPVAVISGNHDHPDRISAARTLMCAHNIFLFGRPQAAVCRIDVPS 120 Query: 120 TGEVAKIAALPYPSEARLGELLAGDAGEDELRLAYSARVGRLMNLLGREFTPQTVNLAMS 179 GE +A L YPSE+RL ELL+ D E +R Y R+ L+ + FT +TVN+AMS Sbjct: 121 CGETMMLAPLAYPSESRLAELLSSDCKETTMRDRYDDRIRALLAAMAASFTAETVNIAMS 180 Query: 180 HIYVLGGVESDSERPIQVGGAYTVDPSALSCGAQYTALGHLHRAQRVK-GDSMIRYSGSP 238 H+YV GG SDSERPI+VGGAYTV +L AQY ALGHLHR Q VK + RYSGSP Sbjct: 181 HLYVAGGRTSDSERPIEVGGAYTVAAESLPKAAQYVALGHLHRPQDVKQAKTAARYSGSP 240 Query: 239 LAYSFSEAGQAKSVALIEVAPGGEPSFEEIYLRCGRPLVNWKSSGGLQEVYGWLDEGRDA 298 LAYSFSEAGQAKSV +++V PGG EI L G+PL+ WK++ GL +VY W +EGRD Sbjct: 241 LAYSFSEAGQAKSVTVVDVHPGGAAKVAEIPLVAGKPLIRWKATEGLAQVYRWCEEGRDR 300 Query: 299 TAFIDLELRLTEAMSLNDIQRLRKSREGIIHIRPVYPQMEQELEEMARSRMPVQELFRRF 358 +++IDLE+ +TE++++ +I RLRK G +HIRPV P +E+ EM+R + ++E+F RF Sbjct: 301 SSWIDLEIHVTESLTMEEIDRLRKLHPGFVHIRPVLPNRVEEMMEMSREPLSLEEMFHRF 360 Query: 359 YQRQTGGAEPED 370 Y+RQTGG P++ Sbjct: 361 YERQTGGQTPDE 372 >C5D6P8.1 C5D6P8_9BACI Nuclease SbcCD, D subunit Length = 393 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/372 (54%), Positives = 267/372 (71%), Gaps = 2/372 (0%) Query: 1 MRILHTGDWHLGRTLEGRSRQKEQEQFIDELVEIADAAQADLILMAGDVYDSVNPPAAAE 60 MRILHT DWHLGRTLEGRSR EQEQFIDELV+I + + D++LMAGDV+DSVNPPAAAE Sbjct: 1 MRILHTADWHLGRTLEGRSRLPEQEQFIDELVDIVEKEKIDVVLMAGDVFDSVNPPAAAE 60 Query: 61 QLFYDAAARLTADG-RPLVVISGNHDQPERVASVSPLVRRQGIALVGMPTSEPVTVHAAR 119 QLFY++ ARL+ G RP+ VI+GNHD PER+++ LV GI L+G P + + Sbjct: 61 QLFYESLARLSDKGKRPVAVIAGNHDHPERISAARKLVADYGILLLGWPDTTVYRIEVPA 120 Query: 120 TGEVAKIAALPYPSEARLGELLAGDAGEDELRLAYSARVGRLMNLLGREFTPQTVNLAMS 179 E +A LPYPSE+RL ELL+ + E LR Y R+ L + F+ +TVN+AMS Sbjct: 121 RNETMMLAPLPYPSESRLAELLSKEHSEISLRDRYDERIRHLFAAMSASFSEKTVNIAMS 180 Query: 180 HIYVLGGVESDSERPIQVGGAYTVDPSALSCGAQYTALGHLHRAQRVK-GDSMIRYSGSP 238 HIYV GG SDSERPI+VGGAYTV ++L AQY ALGHLHR Q VK ++ RYSGSP Sbjct: 181 HIYVAGGSTSDSERPIEVGGAYTVAATSLPKQAQYVALGHLHRPQDVKRAETAARYSGSP 240 Query: 239 LAYSFSEAGQAKSVALIEVAPGGEPSFEEIYLRCGRPLVNWKSSGGLQEVYGWLDEGRDA 298 LAYSFSEAG AKSV +++V P + EI L G+PLV W+++ G+ +VY W +EG+D Sbjct: 241 LAYSFSEAGYAKSVTIVDVKPREKAIVSEIPLSSGKPLVRWQATEGIAQVYRWCEEGKDP 300 Query: 299 TAFIDLELRLTEAMSLNDIQRLRKSREGIIHIRPVYPQMEQELEEMARSRMPVQELFRRF 358 +A+IDLE+ L++ +S+ +I RLRK G +HIRPV+P+ E+ +E + R+ ++E+FRRF Sbjct: 301 SAWIDLEIHLSQPLSMEEIYRLRKLHSGFVHIRPVFPEKEEHIENRKQERLSLEEMFRRF 360 Query: 359 YQRQTGGAEPED 370 Y+RQTGG + +D Sbjct: 361 YERQTGGGKADD 372 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,233,637,076 Number of extensions: 94307506 Number of successful extensions: 268459 Number of sequences better than 1.0e-05: 779 Number of HSP's gapped: 266687 Number of HSP's successfully gapped: 804 Length of query: 393 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 255 Effective length of database: 1,760,596,133 Effective search space: 448952013915 Effective search space used: 448952013915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)