BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0422.0024.p
         (109 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A9VRB8.1 A9VRB8_BACWK NAD-dependent epimerase/dehydratase              97   3e-19
C3R119.1 C3R119_9BACE NAD-dependent epimerase/dehydratase              86   1e-15
B7HXA9.1 B7HXA9_BACC7 UDP-glucose 4-epimerase                          84   3e-15
C2SBT9.1 C2SBT9_BACCE NAD-dependent epimerase/dehydratase              84   3e-15
A8RE00.1 A8RE00_9FIRM Putative uncharacterized protein                 84   3e-15

>A9VRB8.1 A9VRB8_BACWK NAD-dependent epimerase/dehydratase
          Length = 287

 Score = 97.4 bits (241), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 52/77 (67%)

Query: 1  LQQWPEQYEVEEISVRGEEWKKHDFSIYDVVLHVAGIAHVSADPSKESEYYRINRDLAIE 60
          +  WP QY VE+ISVR ++WK  DFS YDVVLHVAGIAHVSA+P  E  YY+INRDLAI 
Sbjct: 23 VNNWPNQYVVEKISVRNDDWKMEDFSKYDVVLHVAGIAHVSANPKMEDMYYKINRDLAIN 82

Query: 61 XXXXXXXXXXXXFIFMS 77
                      FIFMS
Sbjct: 83 IAEKAEKENVKQFIFMS 99


>C3R119.1 C3R119_9BACE NAD-dependent epimerase/dehydratase
          Length = 292

 Score = 85.5 bits (210), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 48/77 (62%)

Query: 1  LQQWPEQYEVEEISVRGEEWKKHDFSIYDVVLHVAGIAHVSADPSKESEYYRINRDLAIE 60
          L   PEQY+++ +   G+ WK  D+S YDVV HVAGIAHV+ADP  E  YY++NRDL IE
Sbjct: 22 LGTAPEQYQIDSVDTMGDNWKMADYSQYDVVFHVAGIAHVNADPKMEPLYYKVNRDLTIE 81

Query: 61 XXXXXXXXXXXXFIFMS 77
                      FIFMS
Sbjct: 82 VAKHAKANCVKQFIFMS 98


>B7HXA9.1 B7HXA9_BACC7 UDP-glucose 4-epimerase
          Length = 290

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 46/77 (59%)

Query: 1  LQQWPEQYEVEEISVRGEEWKKHDFSIYDVVLHVAGIAHVSADPSKESEYYRINRDLAIE 60
          L QWP++Y +E IS+R EEWK  DFS+YDV+ HVA I H    P  E  YYR+NRDL I 
Sbjct: 20 LLQWPDKYLIEYISLRNEEWKDKDFSLYDVIFHVAAIVHQKEKPEMEELYYRVNRDLTIA 79

Query: 61 XXXXXXXXXXXXFIFMS 77
                      FIFMS
Sbjct: 80 LANKAKNAGVKQFIFMS 96


>C2SBT9.1 C2SBT9_BACCE NAD-dependent epimerase/dehydratase
          Length = 290

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 46/77 (59%)

Query: 1  LQQWPEQYEVEEISVRGEEWKKHDFSIYDVVLHVAGIAHVSADPSKESEYYRINRDLAIE 60
          L QWP++Y +E IS+R EEWK  DFS+YDV+ HVA I H    P  E  YYR+NRDL I 
Sbjct: 20 LLQWPDKYLIEYISLRNEEWKDKDFSLYDVIFHVAAIVHQKEKPEMEELYYRVNRDLTIA 79

Query: 61 XXXXXXXXXXXXFIFMS 77
                      FIFMS
Sbjct: 80 LANKAKNAGVKQFIFMS 96


>A8RE00.1 A8RE00_9FIRM Putative uncharacterized protein
          Length = 286

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 6/109 (5%)

Query: 1   LQQWPEQYEVEEISVRGEEWKKHDFSIYDVVLHVAGIAHVSADPSKESEYYRINRDLAIE 60
           L ++P+ Y+V+E+ +R ++WK+HDFS+YDVV HVAG+AH + D S+ + YYR+N DL  E
Sbjct: 21  LSKYPKDYQVDELEMRDDDWKQHDFSVYDVVYHVAGLAHSTPDESQRALYYRVNTDLTYE 80

Query: 61  XXXXXXXXXXXXFIFMS---LYPAELPGHKSITEKQAKIMLPYVDNFFN 106
                       FIFMS   +Y +   G   +  K   +     DNF+ 
Sbjct: 81  VAKKAKEAGVKQFIFMSSIIVYGSGKIGEDRVITKDTPLT---PDNFYG 126


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 576,164,098
Number of extensions: 16522712
Number of successful extensions: 34448
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 34443
Number of HSP's successfully gapped: 33
Length of query: 109
Length of database: 3,060,696,203
Length adjustment: 77
Effective length of query: 32
Effective length of database: 2,335,278,048
Effective search space: 74728897536
Effective search space used: 74728897536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)