BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0422.0022.p (446 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKZ9.1 B3KKZ9_9BACI Trigger factor 555 e-156 B1DDU3.1 B1DDU3_9BACL Trigger factor 518 e-145 Q5WEN8.1 TIG_BACSK Trigger factor 445 e-123 Q5KWJ8.1 TIG_GEOKA Trigger factor 438 e-121 C3IY08.1 C3IY08_9BACI Trigger factor 437 e-120 >B3KKZ9.1 B3KKZ9_9BACI Trigger factor Length = 440 Score = 555 bits (1430), Expect = e-156, Method: Compositional matrix adjust. Identities = 300/427 (70%), Positives = 341/427 (79%) Query: 1 MKATWEKIEKNXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXPGFRKGKVPRPIFESRFGV 60 MKATWEKIEKN D PGFRKGKVPRPIFE+RFGV Sbjct: 1 MKATWEKIEKNLGVLDVEVDAERVASALDKAFNKVAKKANVPGFRKGKVPRPIFEARFGV 60 Query: 61 ESLYQDAIDILLPEAYGEAVEETDIFPVDRPEVDIEQFAKGQPFIFKAKVTVKPEVVLGQ 120 ESLYQDAIDILLPE Y EAVE+ DIFPVDRPEVDIEQFAKG+ F FKA+VTVKPEV LG+ Sbjct: 61 ESLYQDAIDILLPEVYSEAVEQADIFPVDRPEVDIEQFAKGETFKFKARVTVKPEVKLGE 120 Query: 121 YKGLEVPAQKAEITEDELNAELKRLQERHAELVVVDDEPAANGDIAVIDFDGSVDGVQFE 180 YKG+EV A AE++++ELN EL+RLQ+RHAEL V+D+ + +GDI VIDFDGSVDGV FE Sbjct: 121 YKGVEVAAVAAEVSDEELNEELERLQQRHAELTVIDEGASQSGDIVVIDFDGSVDGVPFE 180 Query: 181 GGQAERHSLELGSNSFIPGFEEQVVGMSTGDFKDVEVTFPEAYHAENLAGKAAVFKVKVH 240 GGQAER+SLELGSN+FIPGFE+QV+GM+TGDFKDVEVTFPE YHAE LA K AVFKVKVH Sbjct: 181 GGQAERYSLELGSNTFIPGFEDQVIGMATGDFKDVEVTFPETYHAEELANKQAVFKVKVH 240 Query: 241 EIKRKQLPELDDEFAKDVSEFDTLEEYKADLKAQLESRKQEELKGXXXXXXXXXXXXXXX 300 EIKRKQLPELDDEFAKDVSEFDTL+EYK DLK QL +RK++E +G Sbjct: 241 EIKRKQLPELDDEFAKDVSEFDTLDEYKGDLKKQLLTRKEQEAQGVRENEAVEKAAANAE 300 Query: 301 XXIPDAMIASEVANMVRDFDNRLRQQGMNMDMFLSFSGQTREDLELQMKGDAEKRVRNNL 360 IP+AMI SEV NM+RDFDNRLRQQGMN++MFLSFSGQT DLE QMK DAEKRVRNNL Sbjct: 301 VEIPEAMIQSEVQNMMRDFDNRLRQQGMNLEMFLSFSGQTNADLEGQMKDDAEKRVRNNL 360 Query: 361 VLEVIAKAENIEVSEEEVNAELASMAESFKRTPEEIRSILAANGSLSSLNDEISLRKTID 420 VLE IAK E +EVSEEE+N EL +MA+++KR+ +EIRSIL ANGSL SL +E+ LRKTID Sbjct: 361 VLEQIAKEEKLEVSEEEINKELENMADTYKRSADEIRSILGANGSLDSLREELLLRKTID 420 Query: 421 FLVENSV 427 FL+ENSV Sbjct: 421 FLLENSV 427 >B1DDU3.1 B1DDU3_9BACL Trigger factor Length = 434 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 264/426 (61%), Positives = 320/426 (75%) Query: 1 MKATWEKIEKNXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXPGFRKGKVPRPIFESRFGV 60 MKATWEKI+KN D PGFRKGKVPR +FESRFGV Sbjct: 1 MKATWEKIDKNLVSIDVEVDAEKVAAALDQAFKKVVQKVNVPGFRKGKVPRGMFESRFGV 60 Query: 61 ESLYQDAIDILLPEAYGEAVEETDIFPVDRPEVDIEQFAKGQPFIFKAKVTVKPEVVLGQ 120 ESLYQDAIDILLP+AY EAV+ T+ PVDRPE+D+EQFAKGQ F FKAKV V+PEV LG+ Sbjct: 61 ESLYQDAIDILLPQAYEEAVKVTEQRPVDRPEIDVEQFAKGQSFKFKAKVIVRPEVTLGE 120 Query: 121 YKGLEVPAQKAEITEDELNAELKRLQERHAELVVVDDEPAANGDIAVIDFDGSVDGVQFE 180 YKGLEVP+ +A ++E+E+NAEL+RLQ+RHAEL V+++ A NGDI VIDFDG VDG F+ Sbjct: 121 YKGLEVPSFEATVSEEEVNAELERLQQRHAELTVLEEGAAQNGDITVIDFDGYVDGEAFD 180 Query: 181 GGQAERHSLELGSNSFIPGFEEQVVGMSTGDFKDVEVTFPEAYHAENLAGKAAVFKVKVH 240 GG+AE +SLELGSNSFIPGFE+QVVGM TGDFKDVEVTFPE+YHAENLAGK AVFKVK+H Sbjct: 181 GGKAESYSLELGSNSFIPGFEDQVVGMQTGDFKDVEVTFPESYHAENLAGKPAVFKVKLH 240 Query: 241 EIKRKQLPELDDEFAKDVSEFDTLEEYKADLKAQLESRKQEELKGXXXXXXXXXXXXXXX 300 EIKRK LP LDDEFAKD+SEFDTLEEYK DL ++L+ K+ E + Sbjct: 241 EIKRKNLPALDDEFAKDISEFDTLEEYKQDLVSKLKENKEGEAERNLQNAVIEKAAEAAE 300 Query: 301 XXIPDAMIASEVANMVRDFDNRLRQQGMNMDMFLSFSGQTREDLELQMKGDAEKRVRNNL 360 +P+ MI +EV M+RDF+NRLR QGMN+D++ FSGQ+ + L QMK DA+KRVRNNL Sbjct: 301 VEVPEPMINTEVDFMLRDFENRLRMQGMNIDLYYQFSGQSEQVLRDQMKEDAQKRVRNNL 360 Query: 361 VLEVIAKAENIEVSEEEVNAELASMAESFKRTPEEIRSILAANGSLSSLNDEISLRKTID 420 VL IAK+ENI+VSEE+VN EL S+++++ R E+R + NG SL ++I LRKTI+ Sbjct: 361 VLNAIAKSENIQVSEEDVNEELESLSKAYNRPAAELRDVFEKNGQFDSLKEDIELRKTIE 420 Query: 421 FLVENS 426 FLVENS Sbjct: 421 FLVENS 426 >Q5WEN8.1 TIG_BACSK Trigger factor Length = 434 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 240/427 (56%), Positives = 299/427 (70%), Gaps = 1/427 (0%) Query: 1 MKATWEKIEKNXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXPGFRKGKVPRPIFESRFGV 60 M A WEK E+N D PGFRKGKVPR +FE +FGV Sbjct: 1 MSAKWEKTEENTGVLTIEVEADKVNDALDKAFKKVVKKVNVPGFRKGKVPRGLFEKQFGV 60 Query: 61 ESLYQDAIDILLPEAYGEAVEETDIFPVDRPEVDIEQFAKGQPFIFKAKVTVKPEVVLGQ 120 ESLYQDAIDILLPEAY AVEET I+PVDRPE+D+E K +P I KA VTVKPEV LG Sbjct: 61 ESLYQDAIDILLPEAYANAVEETGIYPVDRPEIDVESIGKNEPLIVKATVTVKPEVKLGD 120 Query: 121 YKGLEVPAQKAEITEDELNAELKRLQERHAELVVVDDEPAANGDIAVIDFDGSVDGVQFE 180 YKGLEV ++T++++ AELK+LQE+HAELVV+++ ANGD AVIDF G VDG FE Sbjct: 121 YKGLEVEVPSTDVTDEDVEAELKKLQEQHAELVVLEEGEIANGDTAVIDFAGYVDGEAFE 180 Query: 181 GGQAERHSLELGSNSFIPGFEEQVVGMSTGDFKDVEVTFPEAYHAENLAGKAAVFKVKVH 240 GG AE +SLE+GSNSFIPGFEEQ+VG+ +G+ KDVEVTFPE YHAE LAGK A FKVKVH Sbjct: 181 GGTAENYSLEIGSNSFIPGFEEQLVGLKSGEEKDVEVTFPEEYHAEELAGKPATFKVKVH 240 Query: 241 EIKRKQLPELDDEFAKDVSE-FDTLEEYKADLKAQLESRKQEELKGXXXXXXXXXXXXXX 299 +IKRK+LPELDDEFAKDV+E +TL+E K +L++ LE +K+ + Sbjct: 241 DIKRKELPELDDEFAKDVNEKVETLDELKNELRSTLEEQKKTASENAVRDSLLEKAAEQA 300 Query: 300 XXXIPDAMIASEVANMVRDFDNRLRQQGMNMDMFLSFSGQTREDLELQMKGDAEKRVRNN 359 +P+AMI +E M+++F RL+ QGMN+DM+ FSGQT ED+ Q K DAEKRVR N Sbjct: 301 EINVPEAMIETETDRMLQEFGQRLQAQGMNLDMYFQFSGQTEEDMRNQFKEDAEKRVRVN 360 Query: 360 LVLEVIAKAENIEVSEEEVNAELASMAESFKRTPEEIRSILAANGSLSSLNDEISLRKTI 419 L LE IA+AEN+EVSEEE+ E MA+ ++R+ EEI+++LAA G ++ ++ LRK I Sbjct: 361 LTLEAIAEAENVEVSEEEIEEEFQKMADMYQRSVEEIKALLAAQGGTDNVKGDLKLRKAI 420 Query: 420 DFLVENS 426 D LVENS Sbjct: 421 DVLVENS 427 >Q5KWJ8.1 TIG_GEOKA Trigger factor Length = 428 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 230/427 (53%), Positives = 289/427 (67%), Gaps = 4/427 (0%) Query: 1 MKATWEKIEKNXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXPGFRKGKVPRPIFESRFGV 60 M WEK+E N D PGFRKGKVPR +FE RFGV Sbjct: 1 MSVKWEKLEGNEGVLTVEVDAEKVNKGLDAAFKKVVKNITLPGFRKGKVPRVLFEKRFGV 60 Query: 61 ESLYQDAIDILLPEAYGEAVEETDIFPVDRPEVDIEQFAKGQPFIFKAKVTVKPEVVLGQ 120 E+LYQDA+DILLPEAY +AVEE I PV PE+DIEQ KG+ IFKAKVTVKPEV LGQ Sbjct: 61 EALYQDALDILLPEAYAKAVEEAGIEPVSMPEIDIEQMEKGKSLIFKAKVTVKPEVKLGQ 120 Query: 121 YKGLEVPAQKAEITEDELNAELKRLQERHAELVVVDDEPAANGDIAVIDFDGSVDGVQFE 180 YKGLEV +T++++ ELKRLQE +AELVV +D NGD VIDF+G VDG FE Sbjct: 121 YKGLEVEKMDTTVTDEDVENELKRLQEDYAELVVKEDGTVENGDTVVIDFEGFVDGEPFE 180 Query: 181 GGQAERHSLELGSNSFIPGFEEQVVGMSTGDFKDVEVTFPEAYHAENLAGKAAVFKVKVH 240 GG+AE +SLE+GS +FIPGFEEQ+VGM G+ K+++VTFP+ YHA+ LAGK A FKVKVH Sbjct: 181 GGKAENYSLEIGSGTFIPGFEEQLVGMKAGEEKEIQVTFPDEYHAKQLAGKPATFKVKVH 240 Query: 241 EIKRKQLPELDDEFAKDVS-EFDTLEEYKADLKAQLESRKQEELKGXXXXXXXXXXXXXX 299 E+K KQLP LDDEFAKDV E +TL+E KA ++A+LE K+ E + Sbjct: 241 EVKAKQLPALDDEFAKDVDEEVETLDELKAKIRARLEEAKKNEAETALRNAVVEKAAANA 300 Query: 300 XXXIPDAMIASEVANMVRDFDNRLRQQGMNMDMFLSFSGQTREDLELQMKGDAEKRVRNN 359 IP+ MI +E M+R+FD RL+ QG+N+ ++ FSGQ L QMK DAEKRVR Sbjct: 301 EMDIPEVMIKNETDRMLREFDQRLQMQGLNLQLYYQFSGQDEASLREQMKEDAEKRVRAA 360 Query: 360 LVLEVIAKAENIEVSEEEVNAELASMAESFKRTPEEIRSILAANGSLSSLNDEISLRKTI 419 L LE IAKAENIEV++EEVN EL MAE++K + ++++ +L GSL + +++ RKT+ Sbjct: 361 LTLEAIAKAENIEVTDEEVNKELEKMAEAYKLSVDKLKELL---GSLDGVKEDLKWRKTV 417 Query: 420 DFLVENS 426 DFLVE+S Sbjct: 418 DFLVEHS 424 >C3IY08.1 C3IY08_9BACI Trigger factor Length = 428 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 229/427 (53%), Positives = 289/427 (67%), Gaps = 4/427 (0%) Query: 1 MKATWEKIEKNXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXPGFRKGKVPRPIFESRFGV 60 M WEK+E N D PGFRKGKVPR +FE RFGV Sbjct: 1 MSVKWEKLEGNEGVLTVEVDAEKVNKGLDAAFKKVVKNITLPGFRKGKVPRVLFEKRFGV 60 Query: 61 ESLYQDAIDILLPEAYGEAVEETDIFPVDRPEVDIEQFAKGQPFIFKAKVTVKPEVVLGQ 120 E+LYQDA+DILLPEAY +AVEE I PV PE+DIEQ KG+ IFKAKVTVKPEV LGQ Sbjct: 61 EALYQDALDILLPEAYAKAVEEAGIEPVSMPEIDIEQMEKGKSLIFKAKVTVKPEVKLGQ 120 Query: 121 YKGLEVPAQKAEITEDELNAELKRLQERHAELVVVDDEPAANGDIAVIDFDGSVDGVQFE 180 YKGLEV +T++++ ELKRLQE +AELVV +D NGD VIDF+G VDG FE Sbjct: 121 YKGLEVEKMDTTVTDEDVENELKRLQEDYAELVVKEDGTVENGDTVVIDFEGFVDGEPFE 180 Query: 181 GGQAERHSLELGSNSFIPGFEEQVVGMSTGDFKDVEVTFPEAYHAENLAGKAAVFKVKVH 240 GG+AE +SLE+GS +FIPGFEEQ+VGM G+ K+++VTFP+ YHA+ LAGK A FKV+VH Sbjct: 181 GGKAENYSLEIGSGTFIPGFEEQLVGMKAGEEKEIQVTFPDEYHAKQLAGKPATFKVQVH 240 Query: 241 EIKRKQLPELDDEFAKDVS-EFDTLEEYKADLKAQLESRKQEELKGXXXXXXXXXXXXXX 299 E+K KQLP LDDEFAKDV E +TL+E KA ++A+LE K+ E + Sbjct: 241 EVKAKQLPALDDEFAKDVDEEVETLDELKAKIRARLEEAKKNEAETALRNAVVEKAAANA 300 Query: 300 XXXIPDAMIASEVANMVRDFDNRLRQQGMNMDMFLSFSGQTREDLELQMKGDAEKRVRNN 359 IP+ MI +E M+R+FD RL+ QG+N+ ++ FSGQ L QMK DAEKRVR Sbjct: 301 EMDIPEVMIKNETDRMLREFDQRLQMQGLNLQLYYQFSGQDEASLREQMKEDAEKRVRAA 360 Query: 360 LVLEVIAKAENIEVSEEEVNAELASMAESFKRTPEEIRSILAANGSLSSLNDEISLRKTI 419 L LE IAKAENIEV++EEVN EL MAE++K + ++++ +L GSL + +++ RKT+ Sbjct: 361 LTLEAIAKAENIEVTDEEVNKELEKMAEAYKLSVDKLKELL---GSLDGVKEDLKWRKTV 417 Query: 420 DFLVENS 426 DFLVE+S Sbjct: 418 DFLVEHS 424 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.133 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,110,548,819 Number of extensions: 85418916 Number of successful extensions: 242556 Number of sequences better than 1.0e-05: 1504 Number of HSP's gapped: 238773 Number of HSP's successfully gapped: 1509 Length of query: 446 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 307 Effective length of database: 1,751,175,118 Effective search space: 537610761226 Effective search space used: 537610761226 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)