BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0422.0020.p
         (76 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KL00.1 B3KL00_9BACI ATP-dependent Clp protease proteolytic sub...   142   1e-32
B1DDU2.1 B1DDU2_9BACL ATP-dependent Clp protease proteolytic sub...   131   2e-29
B7DTZ4.1 B7DTZ4_9BACL ATP-dependent Clp protease proteolytic sub...   118   2e-25
C1PTM3.1 C1PTM3_ALIAC ATP-dependent Clp protease proteolytic sub...   118   2e-25
A5H0E1.1 A5H0E1_STAXY ATP-dependent Clp protease proteolytic sub...   114   2e-24

>B3KL00.1 B3KL00_9BACI ATP-dependent Clp protease proteolytic subunit
          Length = 196

 Score =  142 bits (358), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 70/76 (92%)

Query: 1   MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60
           MIHQPLGG+QGQASDI IH DWI+KTRQKLNQIYV+RTGQPLEKIERDTDRD FMSAEEA
Sbjct: 121 MIHQPLGGIQGQASDIQIHADWIIKTRQKLNQIYVERTGQPLEKIERDTDRDFFMSAEEA 180

Query: 61  KEYGLIDQVLSSPIKS 76
           K YG+ID VLSSP KS
Sbjct: 181 KAYGIIDDVLSSPTKS 196


>B1DDU2.1 B1DDU2_9BACL ATP-dependent Clp protease proteolytic subunit
          Length = 195

 Score =  131 bits (330), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 69/74 (93%)

Query: 1   MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60
           MIHQPLGGV+GQASDI IH DWILKT+QKLN+IYV+RTGQP EKI+RDTDRDNFMSAE+A
Sbjct: 121 MIHQPLGGVRGQASDIKIHADWILKTKQKLNEIYVERTGQPYEKIDRDTDRDNFMSAEDA 180

Query: 61  KEYGLIDQVLSSPI 74
             YGLID+V+++P+
Sbjct: 181 LNYGLIDKVITTPV 194


>B7DTZ4.1 B7DTZ4_9BACL ATP-dependent Clp protease proteolytic subunit
          Length = 198

 Score =  118 bits (295), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 63/70 (90%)

Query: 1   MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60
           MIHQPLGGV+GQASDI IH +WILKT+ KLN++  +RTGQPLE IERDTDRD+FM+AEEA
Sbjct: 122 MIHQPLGGVEGQASDIKIHAEWILKTKDKLNRLLSERTGQPLEVIERDTDRDHFMTAEEA 181

Query: 61  KEYGLIDQVL 70
           K YGLID+VL
Sbjct: 182 KAYGLIDEVL 191


>C1PTM3.1 C1PTM3_ALIAC ATP-dependent Clp protease proteolytic subunit ClpP
           EC=3.4.21.92
          Length = 198

 Score =  118 bits (295), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 63/70 (90%)

Query: 1   MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60
           MIHQPLGGV+GQASDI IH +WILKT+ KLN++  +RTGQPLE IERDTDRD+FM+AEEA
Sbjct: 122 MIHQPLGGVEGQASDIKIHAEWILKTKDKLNRLLSERTGQPLEVIERDTDRDHFMTAEEA 181

Query: 61  KEYGLIDQVL 70
           K YGLID+VL
Sbjct: 182 KAYGLIDEVL 191


>A5H0E1.1 A5H0E1_STAXY ATP-dependent Clp protease proteolytic subunit
          Length = 194

 Score =  114 bits (286), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 61/70 (87%)

Query: 1   MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60
           MIHQPLGG QGQA++I I  + ILKTR KLNQI  +RTGQ +EKIE+DTDRDNF+SAEEA
Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTRAKLNQILAERTGQSIEKIEKDTDRDNFLSAEEA 180

Query: 61  KEYGLIDQVL 70
           KEYGL+DQV+
Sbjct: 181 KEYGLVDQVM 190


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 461,234,206
Number of extensions: 15082497
Number of successful extensions: 42694
Number of sequences better than 1.0e-05: 2458
Number of HSP's gapped: 42599
Number of HSP's successfully gapped: 2458
Length of query: 76
Length of database: 3,060,696,203
Length adjustment: 47
Effective length of query: 29
Effective length of database: 2,617,908,498
Effective search space: 75919346442
Effective search space used: 75919346442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)