BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0422.0019.p (418 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL01.1 B3KL01_9BACI ATP-dependent Clp protease, ATP-binding su... 726 0.0 B1DDU1.1 B1DDU1_9BACL ATP-dependent Clp protease, ATP-binding su... 703 0.0 C0ZAG3.1 CLPX_BREBN ATP-dependent Clp protease ATP-binding subun... 652 0.0 B7GH25.1 CLPX_ANOFW ATP-dependent Clp protease ATP-binding subun... 640 0.0 C5D5L4.1 C5D5L4_9BACI ATP-dependent Clp protease, ATP-binding su... 640 0.0 >B3KL01.1 B3KL01_9BACI ATP-dependent Clp protease, ATP-binding subunit ClpX Length = 421 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/399 (89%), Positives = 373/399 (93%) Query: 1 MFKFNDEKGQLKCSFCGKSQEQVRKLVAGPGVYICDECIELCTXXXXXXXXXXXXXXXKD 60 MFKFND+KGQLKCSFCGKSQEQVRKLVAGPGVYICDECI+LC+ KD Sbjct: 1 MFKFNDDKGQLKCSFCGKSQEQVRKLVAGPGVYICDECIDLCSEIVEEELGHEEEVDLKD 60 Query: 61 IPKPKEIRDILDQYVIGQEQAKKSLSVAVYNHYKRVNSQSKIEDVELTKSNILLLGPTGS 120 IPKP+EIRDILDQYVIGQ+QAKKSLSVAVYNHYKR+N+QSKIEDVEL KSNILLLGPTGS Sbjct: 61 IPKPREIRDILDQYVIGQDQAKKSLSVAVYNHYKRINTQSKIEDVELQKSNILLLGPTGS 120 Query: 121 GKTLLAQTMAKIINVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYI 180 GKTLLAQTMAKI+NVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYI Sbjct: 121 GKTLLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYI 180 Query: 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI Sbjct: 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 Query: 241 LFIVGGAFDGLEQMIKRRIGKKVIGFNAAVEGQKDLKTGEYLSMVLPEDLLKFGLIPEFV 300 LFI GGAFDGLEQ IKRRIGKKVIGFNA+ E QKDLK GEYL+MVLPEDLLKFGLIPEFV Sbjct: 241 LFICGGAFDGLEQYIKRRIGKKVIGFNASGESQKDLKPGEYLTMVLPEDLLKFGLIPEFV 300 Query: 301 GRLPVISTLEPLDENTLVRILSEPKNALTKQYIKLLEMDNVALKFEPLALEAIAKEAIKR 360 GRLPV+STLEPLDE TLVRILSEPKNALTKQY KLLE DNV LKFEP ALEAIA+EAIKR Sbjct: 301 GRLPVVSTLEPLDEATLVRILSEPKNALTKQYQKLLEFDNVNLKFEPSALEAIAREAIKR 360 Query: 361 NTGARGLRAIIESIMLDVMYEVPSRDDIKDCVITEQVVQ 399 NTGARGLR+IIESIMLDVMYEVPSRDDIKDCVITEQVV+ Sbjct: 361 NTGARGLRSIIESIMLDVMYEVPSRDDIKDCVITEQVVR 399 >B1DDU1.1 B1DDU1_9BACL ATP-dependent Clp protease, ATP-binding subunit ClpX Length = 418 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/399 (87%), Positives = 363/399 (90%) Query: 1 MFKFNDEKGQLKCSFCGKSQEQVRKLVAGPGVYICDECIELCTXXXXXXXXXXXXXXXKD 60 MFKFNDEKGQLKCSFCGKSQEQVRKLVAGPGVYICDECIELCT KD Sbjct: 1 MFKFNDEKGQLKCSFCGKSQEQVRKLVAGPGVYICDECIELCTEIVEEELGHEEELDLKD 60 Query: 61 IPKPKEIRDILDQYVIGQEQAKKSLSVAVYNHYKRVNSQSKIEDVELTKSNILLLGPTGS 120 IPKPK+IR ILD YVIGQE AKKSLSVAVYNHYKR+NSQSKIEDVEL KSNILL+GPTGS Sbjct: 61 IPKPKDIRAILDSYVIGQEFAKKSLSVAVYNHYKRINSQSKIEDVELQKSNILLVGPTGS 120 Query: 121 GKTLLAQTMAKIINVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYI 180 GKTLLAQTMAKI+NVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYI Sbjct: 121 GKTLLAQTMAKILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYI 180 Query: 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI Sbjct: 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 Query: 241 LFIVGGAFDGLEQMIKRRIGKKVIGFNAAVEGQKDLKTGEYLSMVLPEDLLKFGLIPEFV 300 LFI GGAFDGLE +IKRRIGKKVIGF++ E QKDLK GEYLSMVLPEDLLKFGLIPEFV Sbjct: 241 LFICGGAFDGLESLIKRRIGKKVIGFSSTGEVQKDLKPGEYLSMVLPEDLLKFGLIPEFV 300 Query: 301 GRLPVISTLEPLDENTLVRILSEPKNALTKQYIKLLEMDNVALKFEPLALEAIAKEAIKR 360 GRLPVISTLEPLDE L+RILSEPKNAL KQY KLLEMDNV L FEP ALEAIAKEAIKR Sbjct: 301 GRLPVISTLEPLDEAALMRILSEPKNALVKQYQKLLEMDNVKLDFEPAALEAIAKEAIKR 360 Query: 361 NTGARGLRAIIESIMLDVMYEVPSRDDIKDCVITEQVVQ 399 NTGARGLRAIIE IML+VMYEVPSRDD+ C+ITE+ V+ Sbjct: 361 NTGARGLRAIIEGIMLEVMYEVPSRDDVSTCLITEKNVK 399 >C0ZAG3.1 CLPX_BREBN ATP-dependent Clp protease ATP-binding subunit clpX Length = 421 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/403 (80%), Positives = 355/403 (88%), Gaps = 6/403 (1%) Query: 1 MFKFNDEKGQLKCSFCGKSQEQVRKLVAGPGVYICDECIELCTXXXXXXXXXXXXXXXKD 60 MFKFND+KGQLKCSFCGKSQEQVRKLVAGPGVYICDECIELC K+ Sbjct: 1 MFKFNDDKGQLKCSFCGKSQEQVRKLVAGPGVYICDECIELCNEIVQEELGTEEEIDMKE 60 Query: 61 IPKPKEIRDILDQYVIGQEQAKKSLSVAVYNHYKRVNSQSKIEDVELTKSNILLLGPTGS 120 IPKP EIR ILD YVIGQ+ AKKSLSVAVYNHYKR+NS +KIEDVEL KSNI+L+GPTGS Sbjct: 61 IPKPVEIRKILDDYVIGQDMAKKSLSVAVYNHYKRINSGAKIEDVELQKSNIMLIGPTGS 120 Query: 121 GKTLLAQTMAKIINVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYI 180 GKTLLAQT+A+I+NVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAE+GIIYI Sbjct: 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 Query: 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT+NI Sbjct: 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTSNI 240 Query: 241 LFIVGGAFDGLEQMIKRRIGKKVIGFNA----AVEGQKDLKTGEYLSMVLPEDLLKFGLI 296 LFI GGAFDG+EQ+IKRR+GKKVIGF A V+G DLK GEYL +LPEDLLKFGLI Sbjct: 241 LFICGGAFDGVEQIIKRRLGKKVIGFGADFGDGVKG--DLKAGEYLKYILPEDLLKFGLI 298 Query: 297 PEFVGRLPVISTLEPLDENTLVRILSEPKNALTKQYIKLLEMDNVALKFEPLALEAIAKE 356 PEFVGRLPV++TLEPLDE TLVRIL+EPKN+L KQY KLL +D V L+F+ AL IAKE Sbjct: 299 PEFVGRLPVLATLEPLDEETLVRILTEPKNSLVKQYQKLLSLDGVELEFDNGALLQIAKE 358 Query: 357 AIKRNTGARGLRAIIESIMLDVMYEVPSRDDIKDCVITEQVVQ 399 AIKRNTGARGLRAIIE IMLD+MYE+PSR+D+ CVITE+ V+ Sbjct: 359 AIKRNTGARGLRAIIEQIMLDMMYELPSREDVNKCVITEETVR 401 >B7GH25.1 CLPX_ANOFW ATP-dependent Clp protease ATP-binding subunit clpX Length = 420 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/399 (77%), Positives = 356/399 (89%), Gaps = 2/399 (0%) Query: 1 MFKFNDEKGQLKCSFCGKSQEQVRKLVAGPGVYICDECIELCTXXXXXXXXXXXXXXXKD 60 MFKFNDEKGQLKCSFCGK+QEQVRKLVAGPGVYICDECIELCT KD Sbjct: 1 MFKFNDEKGQLKCSFCGKTQEQVRKLVAGPGVYICDECIELCTEIVQEELGSEEEVEFKD 60 Query: 61 IPKPKEIRDILDQYVIGQEQAKKSLSVAVYNHYKRVNSQSKIEDVELTKSNILLLGPTGS 120 +PKPKEIRDILD+YVIGQ++AKK+LSVAVYNHYKR+NS SKI+DVEL KSNIL++GPTGS Sbjct: 61 VPKPKEIRDILDEYVIGQDEAKKALSVAVYNHYKRINSNSKIDDVELAKSNILMIGPTGS 120 Query: 121 GKTLLAQTMAKIINVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYI 180 GKTLLAQT+A+I+NVPFAIADATSLTEAGYVGEDVENILLKLIQAADYD+E+AE+GIIYI Sbjct: 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDIERAEKGIIYI 180 Query: 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 DEIDK+ARKSENPSITRDVSGEGVQQALLKILEGT+ASVPPQGGRKHPHQEFIQIDTTNI Sbjct: 181 DEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNI 240 Query: 241 LFIVGGAFDGLEQMIKRRIGKKVIGFNAAVEGQKDLKTGEYLSMVLPEDLLKFGLIPEFV 300 LFI GGAFDGLE +IKRR+GKKVIGF++ + Q +++ + LS VLPEDLLKFGLIPEFV Sbjct: 241 LFICGGAFDGLEPIIKRRLGKKVIGFSS--DAQAEVEEKDLLSKVLPEDLLKFGLIPEFV 298 Query: 301 GRLPVISTLEPLDENTLVRILSEPKNALTKQYIKLLEMDNVALKFEPLALEAIAKEAIKR 360 GRLPVI++L+PLDE+ LV IL +PKNAL KQY K+LE+D+V L+FE AL IAK AI+R Sbjct: 299 GRLPVITSLQPLDEDALVDILVKPKNALVKQYEKMLELDDVELEFEEEALREIAKRAIER 358 Query: 361 NTGARGLRAIIESIMLDVMYEVPSRDDIKDCVITEQVVQ 399 TGARGLR+IIE IMLDVM+E+PSR+D++ C+IT + V+ Sbjct: 359 KTGARGLRSIIEGIMLDVMFELPSREDVQKCIITAETVR 397 >C5D5L4.1 C5D5L4_9BACI ATP-dependent Clp protease, ATP-binding subunit ClpX Length = 421 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/399 (78%), Positives = 355/399 (88%), Gaps = 1/399 (0%) Query: 1 MFKFNDEKGQLKCSFCGKSQEQVRKLVAGPGVYICDECIELCTXXXXXXXXXXXXXXXKD 60 MFKFNDEKGQLKCSFCGK+Q+QVRKLVAGPGVYICDECIELCT KD Sbjct: 1 MFKFNDEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGNEEEFEFKD 60 Query: 61 IPKPKEIRDILDQYVIGQEQAKKSLSVAVYNHYKRVNSQSKIEDVELTKSNILLLGPTGS 120 IPKPKEIR+ILD+YVIGQ++AKKSL+VAVYNHYKR+NS SKI+DVEL+KSNIL++GPTGS Sbjct: 61 IPKPKEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGS 120 Query: 121 GKTLLAQTMAKIINVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAERGIIYI 180 GKTLLAQT+A+I+NVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVE+AE+GIIYI Sbjct: 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVERAEKGIIYI 180 Query: 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 DEIDK+ARKSENPSITRDVSGEGVQQALLKILEGT+ASVPPQGGRKHPHQEFIQIDTTNI Sbjct: 181 DEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNI 240 Query: 241 LFIVGGAFDGLEQMIKRRIGKKVIGFNAAVEGQKDLKTGEYLSMVLPEDLLKFGLIPEFV 300 LFI GGAFDGLE +IKRR+GKKVIGF A ++ Q D+ LS VLPEDLLKFGLIPEFV Sbjct: 241 LFICGGAFDGLEPIIKRRLGKKVIGFGADIQ-QSDVDEKNLLSKVLPEDLLKFGLIPEFV 299 Query: 301 GRLPVISTLEPLDENTLVRILSEPKNALTKQYIKLLEMDNVALKFEPLALEAIAKEAIKR 360 GRLPVI+TLEPLDE LV IL++PKNA+ KQY K+LE+D V L+FE AL IAK+AI+R Sbjct: 300 GRLPVITTLEPLDEQALVDILTKPKNAIVKQYQKMLELDGVELEFEEEALREIAKKAIER 359 Query: 361 NTGARGLRAIIESIMLDVMYEVPSRDDIKDCVITEQVVQ 399 TGARGLR+IIE IMLDVM+E+PSR+D++ C+IT + V+ Sbjct: 360 KTGARGLRSIIEGIMLDVMFELPSREDVQKCIITVETVR 398 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,143,748,636 Number of extensions: 85238466 Number of successful extensions: 411006 Number of sequences better than 1.0e-05: 3046 Number of HSP's gapped: 411276 Number of HSP's successfully gapped: 4059 Length of query: 418 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 280 Effective length of database: 1,760,596,133 Effective search space: 492966917240 Effective search space used: 492966917240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)