BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0422.0016.p (432 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL03.1 B3KL03_9BACI ATP-dependent protease LonB EC=3.4.21.53 674 0.0 B1DDT9.1 B1DDT9_9BACL ATP-dependent protease LonB EC=3.4.21.53 646 0.0 C3IY10.1 C3IY10_9BACI ATP-dependent protease LonB EC=3.4.21.53 561 e-158 B7Y663.1 B7Y663_9BACI ATP-dependent protease LonB EC=3.4.21.53 561 e-158 A4IRH1.1 A4IRH1_GEOTN ATP-dependent Lon protease 561 e-158 >B3KL03.1 B3KL03_9BACI ATP-dependent protease LonB EC=3.4.21.53 Length = 576 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/394 (82%), Positives = 353/394 (89%) Query: 1 MELSILLMIVQLFFALVIGVYFWNLLRGQKTNKTAVDRESRKELDKLRKMRMISLTKPLS 60 M LSI++M+VQLFFA++IG+YFWNLLRGQKT+KTAVDRESRKELDKLRK+R +SLTKPL+ Sbjct: 1 MNLSIVIMLVQLFFAVIIGIYFWNLLRGQKTSKTAVDRESRKELDKLRKLRSVSLTKPLA 60 Query: 61 EKTRPASIGDIVGQKDGLRALKAALCSANPQHVIIYGPPGVGKTAAARVVMEEAKKNGLS 120 EKTRP ++ DIVGQKDGLRALKAALCSANPQHVI+YGPPGVGKTAAARVVMEEAKKN S Sbjct: 61 EKTRPQTMDDIVGQKDGLRALKAALCSANPQHVIVYGPPGVGKTAAARVVMEEAKKNPQS 120 Query: 121 PFKSDAKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAGVPQPKPGAVTKAHG 180 PFK DAKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAG+PQPKPGAVTKAHG Sbjct: 121 PFKYDAKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAGIPQPKPGAVTKAHG 180 Query: 181 GILFLDEIGELHPIQMNKLLKVLEDRKVLLESAYYNSEDSNTPAYIHDIFQNGLPADFRL 240 GILF+DEIGELHPIQMNKLLKVLEDRKVLLESAYYNSED+NTPAYIHDIFQNGLPADFRL Sbjct: 181 GILFIDEIGELHPIQMNKLLKVLEDRKVLLESAYYNSEDANTPAYIHDIFQNGLPADFRL 240 Query: 241 VGATTRSPEEISPALRSRCMEIYFRPLLPEEIAVIGRDAVQKIGLKPSPEAIEVVQQYAT 300 VGATTRSPEEI+PALRSRCMEI+FRPLLPEEI I DA+QKIGL PEA+EVV+QY + Sbjct: 241 VGATTRSPEEIAPALRSRCMEIFFRPLLPEEIGRIAEDAIQKIGLNAPPEAVEVVKQYCS 300 Query: 301 NGREAVNMIQLAAGLALTEGRDTLXXXXXXXXXXXXQLPMRTERKIPSSPQIGLVNGLAV 360 NGREAVNMIQLAAGLALTE RD L QL R +RKIP PQ+G+VNGLAV Sbjct: 301 NGREAVNMIQLAAGLALTEKRDALRAADVEWVASSSQLQPRPDRKIPEKPQVGVVNGLAV 360 Query: 361 YGPGMGTLLEIEVSAAPAKSGQGRLNVTGVVDEE 394 YGP MG LLEIEVSA P + G+G N+TGVVDEE Sbjct: 361 YGPNMGALLEIEVSAVPVEEGRGTYNITGVVDEE 394 >B1DDT9.1 B1DDT9_9BACL ATP-dependent protease LonB EC=3.4.21.53 Length = 567 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/394 (77%), Positives = 350/394 (88%) Query: 1 MELSILLMIVQLFFALVIGVYFWNLLRGQKTNKTAVDRESRKELDKLRKMRMISLTKPLS 60 M LS++LM++Q+FFA+VIG+YFWNLLR QKTN++AVDRESRKE+DKLRK+R +SLTKPL+ Sbjct: 1 MSLSMVLMLIQVFFAVVIGLYFWNLLRNQKTNRSAVDRESRKEMDKLRKLRSVSLTKPLA 60 Query: 61 EKTRPASIGDIVGQKDGLRALKAALCSANPQHVIIYGPPGVGKTAAARVVMEEAKKNGLS 120 EKTRP ++ DIVGQ DGLRALKAALCSANPQHVIIYGPPGVGKTAAARVV+EEAKKN S Sbjct: 61 EKTRPQAMQDIVGQTDGLRALKAALCSANPQHVIIYGPPGVGKTAAARVVLEEAKKNPSS 120 Query: 121 PFKSDAKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAGVPQPKPGAVTKAHG 180 PF ++AKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAG+PQPKPGAVTKAHG Sbjct: 121 PFLNEAKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAGIPQPKPGAVTKAHG 180 Query: 181 GILFLDEIGELHPIQMNKLLKVLEDRKVLLESAYYNSEDSNTPAYIHDIFQNGLPADFRL 240 GILF+DEIGELHPIQMNKLLKVLEDRKV LESAYYNSED+N P YIHDIFQNGLPADFRL Sbjct: 181 GILFIDEIGELHPIQMNKLLKVLEDRKVFLESAYYNSEDANIPLYIHDIFQNGLPADFRL 240 Query: 241 VGATTRSPEEISPALRSRCMEIYFRPLLPEEIAVIGRDAVQKIGLKPSPEAIEVVQQYAT 300 VGATTRSP+++ PA+RSRCMEIYFRPLL EIA I +AV+KIG P P+A++VV++YAT Sbjct: 241 VGATTRSPQDLPPAIRSRCMEIYFRPLLASEIASIAENAVKKIGFGPCPDAVDVVKKYAT 300 Query: 301 NGREAVNMIQLAAGLALTEGRDTLXXXXXXXXXXXXQLPMRTERKIPSSPQIGLVNGLAV 360 NGREAVN+IQLAAG+AL+E RD + Q+P R +RK+P +PQIG VNGLAV Sbjct: 301 NGREAVNVIQLAAGIALSEKRDAITAADVEWVVNSSQIPPRPDRKVPEAPQIGFVNGLAV 360 Query: 361 YGPGMGTLLEIEVSAAPAKSGQGRLNVTGVVDEE 394 YGP MGTLLEIEVSA PA +G+G+ +TGVVDEE Sbjct: 361 YGPNMGTLLEIEVSAIPAAAGKGQYTITGVVDEE 394 >C3IY10.1 C3IY10_9BACI ATP-dependent protease LonB EC=3.4.21.53 Length = 557 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 265/394 (67%), Positives = 325/394 (82%), Gaps = 1/394 (0%) Query: 1 MELSILLMIVQLFFALVIGVYFWNLLRGQKTNKTAVDRESRKELDKLRKMRMISLTKPLS 60 M+ + +++++QLFF ++IG+YFWNLLRGQ+ K ++D+ESRKE+++LRK+R ISLT+PL+ Sbjct: 1 MDWTNIVLVIQLFFGVIIGLYFWNLLRGQRVQKVSIDKESRKEMEQLRKLRSISLTEPLA 60 Query: 61 EKTRPASIGDIVGQKDGLRALKAALCSANPQHVIIYGPPGVGKTAAARVVMEEAKKNGLS 120 EK RP S DIVGQ+DG++ALKAALC NPQHVIIYGPPGVGKTAAAR+V+EEAKKN LS Sbjct: 61 EKVRPKSFDDIVGQEDGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPLS 120 Query: 121 PFKSDAKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAGVPQPKPGAVTKAHG 180 PFK +A F E+DATTARFDERGIADPLIGSVHDPIYQGAGAMG AG+PQPK GAVT AHG Sbjct: 121 PFKKNAVFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQAGIPQPKQGAVTNAHG 180 Query: 181 GILFLDEIGELHPIQMNKLLKVLEDRKVLLESAYYNSEDSNTPAYIHDIFQNGLPADFRL 240 G+LF+DEIGELHPIQMNKLLKVLEDRKV ESAYY+ E+ P++IHDIFQNGLPADFRL Sbjct: 181 GVLFIDEIGELHPIQMNKLLKVLEDRKVFFESAYYSKENPQIPSHIHDIFQNGLPADFRL 240 Query: 241 VGATTRSPEEISPALRSRCMEIYFRPLLPEEIAVIGRDAVQKIGLKPSPEAIEVVQQYAT 300 VGATTR+P EI PA+RSRC+E++FR L +EIA+I + A +KI L S I ++ YA Sbjct: 241 VGATTRTPNEIPPAIRSRCLEVFFRELDQDEIALIAKKAAEKIRLNVSESGIRLLAAYAR 300 Query: 301 NGREAVNMIQLAAGLALTEGRDTLXXXXXXXXXXXXQLPMRTERKIPSSPQIGLVNGLAV 360 NGREAVNM+Q+AAGLA+TE R+ + Q+ R E+KI S+P +G+VNGLAV Sbjct: 301 NGREAVNMMQIAAGLAITENRENILDKDIEWVIQSSQMTPRYEKKIASAPAVGVVNGLAV 360 Query: 361 YGPGMGTLLEIEVSAAPAKSGQGRLNVTGVVDEE 394 YGP G LLEIEV+A PAK G+G +NVTG+V+EE Sbjct: 361 YGPNTGALLEIEVTALPAK-GKGSINVTGIVEEE 393 >B7Y663.1 B7Y663_9BACI ATP-dependent protease LonB EC=3.4.21.53 Length = 557 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 265/394 (67%), Positives = 325/394 (82%), Gaps = 1/394 (0%) Query: 1 MELSILLMIVQLFFALVIGVYFWNLLRGQKTNKTAVDRESRKELDKLRKMRMISLTKPLS 60 M+ + +++++QLFF ++IG+YFWNLLRGQ+ K ++D+ESRKE+++LRK+R ISLT+PL+ Sbjct: 1 MDWTNIVLVIQLFFGVIIGLYFWNLLRGQRVQKVSIDKESRKEMEQLRKLRSISLTEPLA 60 Query: 61 EKTRPASIGDIVGQKDGLRALKAALCSANPQHVIIYGPPGVGKTAAARVVMEEAKKNGLS 120 EK RP S DIVGQ+DG++ALKAALC NPQHVIIYGPPGVGKTAAAR+V+EEAKKN LS Sbjct: 61 EKVRPKSFDDIVGQEDGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPLS 120 Query: 121 PFKSDAKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAGVPQPKPGAVTKAHG 180 PFK +A F E+DATTARFDERGIADPLIGSVHDPIYQGAGAMG AG+PQPK GAVT AHG Sbjct: 121 PFKKNAVFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQAGIPQPKQGAVTNAHG 180 Query: 181 GILFLDEIGELHPIQMNKLLKVLEDRKVLLESAYYNSEDSNTPAYIHDIFQNGLPADFRL 240 G+LF+DEIGELHPIQMNKLLKVLEDRKV ESAYY+ E+ P++IHDIFQNGLPADFRL Sbjct: 181 GVLFIDEIGELHPIQMNKLLKVLEDRKVFFESAYYSKENPQIPSHIHDIFQNGLPADFRL 240 Query: 241 VGATTRSPEEISPALRSRCMEIYFRPLLPEEIAVIGRDAVQKIGLKPSPEAIEVVQQYAT 300 VGATTR+P EI PA+RSRC+E++FR L +EIA+I + A +KI L S I ++ YA Sbjct: 241 VGATTRTPNEIPPAIRSRCLEVFFRELDQDEIALIAKKAAEKIRLNVSESGIRLLAAYAR 300 Query: 301 NGREAVNMIQLAAGLALTEGRDTLXXXXXXXXXXXXQLPMRTERKIPSSPQIGLVNGLAV 360 NGREAVNM+Q+AAGLA+TE R+ + Q+ R E+KI S+P +G+VNGLAV Sbjct: 301 NGREAVNMMQIAAGLAITENRENILDKDIEWVIQSSQMTPRYEKKIASAPAVGVVNGLAV 360 Query: 361 YGPGMGTLLEIEVSAAPAKSGQGRLNVTGVVDEE 394 YGP G LLEIEV+A PAK G+G +NVTG+V+EE Sbjct: 361 YGPNTGALLEIEVTALPAK-GKGSINVTGIVEEE 393 >A4IRH1.1 A4IRH1_GEOTN ATP-dependent Lon protease Length = 558 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 266/401 (66%), Positives = 326/401 (81%), Gaps = 1/401 (0%) Query: 1 MELSILLMIVQLFFALVIGVYFWNLLRGQKTNKTAVDRESRKELDKLRKMRMISLTKPLS 60 M + +++++QLFF +VIG+YFWNLL+GQ+ K ++D+ESRKE+++LRK+R ISLT+PL+ Sbjct: 1 MNWTNIVLVIQLFFGVVIGLYFWNLLKGQRVQKVSIDKESRKEMEQLRKLRSISLTEPLA 60 Query: 61 EKTRPASIGDIVGQKDGLRALKAALCSANPQHVIIYGPPGVGKTAAARVVMEEAKKNGLS 120 EK RP S DIVGQ+DG++ALKAALC NPQHVIIYGPPGVGKTAAAR+V+EEAKKN LS Sbjct: 61 EKVRPKSFDDIVGQEDGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPLS 120 Query: 121 PFKSDAKFTEIDATTARFDERGIADPLIGSVHDPIYQGAGAMGVAGVPQPKPGAVTKAHG 180 PFK +A F E+DATTARFDERGIADPLIGSVHDPIYQGAGAMG AG+PQPK GAVT AHG Sbjct: 121 PFKKNAVFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQAGIPQPKQGAVTNAHG 180 Query: 181 GILFLDEIGELHPIQMNKLLKVLEDRKVLLESAYYNSEDSNTPAYIHDIFQNGLPADFRL 240 G+LF+DEIGELHPIQMNKLLKVLEDRKV ESAYY+ E+ P++IHDIFQNGLPADFRL Sbjct: 181 GVLFIDEIGELHPIQMNKLLKVLEDRKVFFESAYYSKENPQIPSHIHDIFQNGLPADFRL 240 Query: 241 VGATTRSPEEISPALRSRCMEIYFRPLLPEEIAVIGRDAVQKIGLKPSPEAIEVVQQYAT 300 VGATTR+P EI PA+RSRC+E++FR L +EIA+I + A +KI L S I ++ YA Sbjct: 241 VGATTRTPNEIPPAIRSRCLEVFFRELDQDEIALIAKKAAEKIRLNVSESGIRLLAAYAR 300 Query: 301 NGREAVNMIQLAAGLALTEGRDTLXXXXXXXXXXXXQLPMRTERKIPSSPQIGLVNGLAV 360 NGREAVNM+Q+AAGLA+TE R+ + Q+ R E+KI S+P +G+VNGLAV Sbjct: 301 NGREAVNMMQIAAGLAITENREKILDKDIEWVIHSSQMAPRYEKKIGSAPAVGVVNGLAV 360 Query: 361 YGPGMGTLLEIEVSAAPAKSGQGRLNVTGVVDEEXXXXPRR 401 YGP G LLEIEV+A PAK G+G +NVTG+V+EE P + Sbjct: 361 YGPNTGALLEIEVTALPAK-GKGSINVTGIVEEESIGSPEK 400 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,528,972,996 Number of extensions: 106283468 Number of successful extensions: 393547 Number of sequences better than 1.0e-05: 1050 Number of HSP's gapped: 395292 Number of HSP's successfully gapped: 1050 Length of query: 432 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 293 Effective length of database: 1,751,175,118 Effective search space: 513094309574 Effective search space used: 513094309574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)