BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0422.0015.p
         (147 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KL03.1 B3KL03_9BACI ATP-dependent protease LonB EC=3.4.21.53        179   6e-44
B1DDT9.1 B1DDT9_9BACL ATP-dependent protease LonB EC=3.4.21.53        174   3e-42
C0ZAG4.1 C0ZAG4_BREBN ATP-dependent protease La homolog EC=3.4.21.-   155   2e-36
Q67SJ8.1 Q67SJ8_SYMTH Lon-like ATP-dependent protease                 144   3e-33
Q9K8F5.1 Q9K8F5_BACHD ATP-dependent proteinase La EC=3.4.21.-         141   2e-32

>B3KL03.1 B3KL03_9BACI ATP-dependent protease LonB EC=3.4.21.53
          Length = 576

 Score =  179 bits (455), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 91/140 (65%), Positives = 111/140 (79%), Gaps = 2/140 (1%)

Query: 1   MNLEPDRYDLHVNFPGGTPIDGPSAGVAMAVAIVSAIRHLPVDNTVAITGEIGIHGRVKP 60
           M   P  YDLH+NFPGGTPIDGPSAG+AMA AIVSAI+ + VDN VA+TGEI IHG+VKP
Sbjct: 423 MGFTPKNYDLHINFPGGTPIDGPSAGIAMATAIVSAIKGIEVDNKVAMTGEISIHGKVKP 482

Query: 61  VGGVIAKVEAAFQAGATTVLIPKENWQSLFADLA-PLQVIPMETVEEVFRHLFGAETADV 119
           +GGVIAKVEAAFQAGAT V+IPK+NWQ+LF DL+  L+VIP+E+V+EVF H+FG   A  
Sbjct: 483 IGGVIAKVEAAFQAGATRVIIPKDNWQTLFQDLSGGLRVIPVESVDEVFGHIFGGSFAPE 542

Query: 120 RLPAVSGETF-SAAPSLLKA 138
            +     E F S++ SLL+A
Sbjct: 543 VIQLPGNEVFPSSSASLLQA 562


>B1DDT9.1 B1DDT9_9BACL ATP-dependent protease LonB EC=3.4.21.53
          Length = 567

 Score =  174 bits (440), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 98/110 (89%)

Query: 3   LEPDRYDLHVNFPGGTPIDGPSAGVAMAVAIVSAIRHLPVDNTVAITGEIGIHGRVKPVG 62
           L P  +DLH+NFPGGTPIDGPSAG+AMA AI SAI+ +P+DN +A+TGE+GIHG VKPVG
Sbjct: 425 LTPQDFDLHINFPGGTPIDGPSAGIAMATAIASAIKEIPIDNKLAMTGEVGIHGNVKPVG 484

Query: 63  GVIAKVEAAFQAGATTVLIPKENWQSLFADLAPLQVIPMETVEEVFRHLF 112
           GV+AKVEAAFQ+GA TV+IP+ENWQ++FADL  L+VIP++ V+EVFR++F
Sbjct: 485 GVLAKVEAAFQSGAETVIIPRENWQAIFADLEGLKVIPVDRVDEVFRYVF 534


>C0ZAG4.1 C0ZAG4_BREBN ATP-dependent protease La homolog EC=3.4.21.-
          Length = 565

 Score =  155 bits (391), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 89/108 (82%)

Query: 1   MNLEPDRYDLHVNFPGGTPIDGPSAGVAMAVAIVSAIRHLPVDNTVAITGEIGIHGRVKP 60
           M + P  YDLH+NFPGG P+DGPSAG+ +A AI SAI + PVDN +A+TGE+ IHG+VKP
Sbjct: 425 MGVRPYDYDLHINFPGGIPVDGPSAGITIATAIYSAIVNQPVDNLLAMTGEVSIHGKVKP 484

Query: 61  VGGVIAKVEAAFQAGATTVLIPKENWQSLFADLAPLQVIPMETVEEVF 108
           VGGV+AKVEAA QAGAT VLIP+ENWQS+FAD+  +++IP+ TV EV 
Sbjct: 485 VGGVVAKVEAAKQAGATRVLIPQENWQSIFADMNGIEIIPVSTVSEVI 532


>Q67SJ8.1 Q67SJ8_SYMTH Lon-like ATP-dependent protease
          Length = 579

 Score =  144 bits (363), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 86/108 (79%)

Query: 1   MNLEPDRYDLHVNFPGGTPIDGPSAGVAMAVAIVSAIRHLPVDNTVAITGEIGIHGRVKP 60
           ++ +P  YD+HVNFPGG P+DGPSAGVA+AVA+ SA    PVDN  A+TGE+ I G VKP
Sbjct: 425 LDEDPRDYDIHVNFPGGVPVDGPSAGVAIAVAVYSAFTGRPVDNRTAMTGEVSIRGLVKP 484

Query: 61  VGGVIAKVEAAFQAGATTVLIPKENWQSLFADLAPLQVIPMETVEEVF 108
           VGGV+AKVEAA QAG T V+IP+ENWQ  FA L+ ++V+P+E ++EVF
Sbjct: 485 VGGVVAKVEAARQAGCTRVIIPQENWQECFARLSGIRVVPVERLDEVF 532


>Q9K8F5.1 Q9K8F5_BACHD ATP-dependent proteinase La EC=3.4.21.-
          Length = 556

 Score =  141 bits (355), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/135 (54%), Positives = 101/135 (74%), Gaps = 3/135 (2%)

Query: 1   MNLEPDRYDLHVNFPGGTPIDGPSAGVAMAVAIVSAIRHLPVDNTVAITGEIGIHGRVKP 60
           M+L  D+YD+H+NFPGG P+DGPSAGVA+A  I SAI+   VDNTVA+TGEI IHG VKP
Sbjct: 422 MDLPIDQYDIHINFPGGAPVDGPSAGVAIATGIYSAIKEEKVDNTVAMTGEISIHGTVKP 481

Query: 61  VGGVIAKVEAAFQAGATTVLIPKENWQSLFADLAPLQVIPMETVEEVFRH-LFGAETADV 119
           VGG++AKVEAA  +GA TVLIPKEN Q++  ++  + +IPM+ +++V  + L   ET + 
Sbjct: 482 VGGIVAKVEAAKASGAKTVLIPKENEQAILQEIEGITIIPMKHLDDVLSYALIREETEEE 541

Query: 120 RLPAVSGETFSAAPS 134
            +PA   ++F +AP+
Sbjct: 542 TIPA--NQSFVSAPA 554


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 899,209,753
Number of extensions: 35415626
Number of successful extensions: 104760
Number of sequences better than 1.0e-05: 2631
Number of HSP's gapped: 104916
Number of HSP's successfully gapped: 2631
Length of query: 147
Length of database: 3,060,696,203
Length adjustment: 110
Effective length of query: 37
Effective length of database: 2,024,384,553
Effective search space: 74902228461
Effective search space used: 74902228461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)