BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0422.0013.p (233 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL04.1 B3KL04_9BACI ATP-dependent protease La 373 e-102 B1DDT8.1 B1DDT8_9BACL ATP-dependent protease La 348 3e-94 Q84FG5.1 Q84FG5_9BACL ATP-dependent protease La 286 1e-75 C0ZAG5.1 C0ZAG5_BREBN ATP-dependent protease La EC=3.4.21.53 283 1e-74 A8FFV7.1 A8FFV7_BACP2 ATP-dependent protease La 279 1e-73 >B3KL04.1 B3KL04_9BACI ATP-dependent protease La Length = 778 Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/224 (84%), Positives = 203/224 (90%) Query: 1 MVLHLDVGREKSVRALEKAMVEDNLILLCSQSEVNIEEPGQEDIFRVGTVANVRQMLKLP 60 MVLHLDVGREKSV+ALEKAMVEDNLILLCSQSEVNIEEP Q+DIFR+GTVANVRQMLKLP Sbjct: 25 MVLHLDVGREKSVKALEKAMVEDNLILLCSQSEVNIEEPTQDDIFRIGTVANVRQMLKLP 84 Query: 61 NGTIRVLVEGVERAEIINYTDNEEYYEVMARVLPEEEDVDQQSDALMRTVLNQFEHYISL 120 NGTIRVLVEG+ERAE+I YTD E+YYEV+AR LPEEE+ D + ALMRTVL+QFE+YI+L Sbjct: 85 NGTIRVLVEGMERAEVIEYTDQEDYYEVIARELPEEENHDPEVSALMRTVLSQFENYINL 144 Query: 121 SKKVTPETLAAVSDIEEPGRLADVITSHLALKIKDKQEILETIDVSKRLEKLLDIXXXXX 180 SKKVTPETLAAVSDI+EPGRLADVITSHL+LKIKDKQEILETIDV KRLEKLLDI Sbjct: 145 SKKVTPETLAAVSDIDEPGRLADVITSHLSLKIKDKQEILETIDVRKRLEKLLDILNNER 204 Query: 181 XXXXXXXKINQRVKKQMEKTQKEYYLREQMKAIQKELGDKEGRA 224 KINQRVKKQMEKTQKEYYLREQMKAIQKELGDKEGRA Sbjct: 205 EVLELERKINQRVKKQMEKTQKEYYLREQMKAIQKELGDKEGRA 248 >B1DDT8.1 B1DDT8_9BACL ATP-dependent protease La Length = 836 Score = 348 bits (892), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 173/224 (77%), Positives = 196/224 (87%) Query: 1 MVLHLDVGREKSVRALEKAMVEDNLILLCSQSEVNIEEPGQEDIFRVGTVANVRQMLKLP 60 MVLHLDVGR+KSVRALEK M++D++ILLCSQSEVNIEEP ++DI+RVGT+A VRQMLKLP Sbjct: 25 MVLHLDVGRDKSVRALEKCMIDDHMILLCSQSEVNIEEPTEDDIYRVGTIAKVRQMLKLP 84 Query: 61 NGTIRVLVEGVERAEIINYTDNEEYYEVMARVLPEEEDVDQQSDALMRTVLNQFEHYISL 120 NGTIRVLVEGV RAE+++Y NE++YEV LPE E D + DALMR+VL+QFEHYISL Sbjct: 85 NGTIRVLVEGVVRAEVVDYVPNEQFYEVTVLELPEPETDDPEVDALMRSVLSQFEHYISL 144 Query: 121 SKKVTPETLAAVSDIEEPGRLADVITSHLALKIKDKQEILETIDVSKRLEKLLDIXXXXX 180 SKKVTPETLAAVSDI+EPGRLADVITSHL+LKIKDKQ+ILETIDV +RLE+LLDI Sbjct: 145 SKKVTPETLAAVSDIDEPGRLADVITSHLSLKIKDKQDILETIDVRERLERLLDILNNER 204 Query: 181 XXXXXXXKINQRVKKQMEKTQKEYYLREQMKAIQKELGDKEGRA 224 KINQRVKKQMEKTQKEYYLREQMKAIQKELG+KEGRA Sbjct: 205 EVLELERKINQRVKKQMEKTQKEYYLREQMKAIQKELGEKEGRA 248 >Q84FG5.1 Q84FG5_9BACL ATP-dependent protease La Length = 779 Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/223 (65%), Positives = 175/223 (78%) Query: 1 MVLHLDVGREKSVRALEKAMVEDNLILLCSQSEVNIEEPGQEDIFRVGTVANVRQMLKLP 60 MVLHLDVGREKSVRALE+AMV+DN ILL +Q EV+IEEP E IF VGTVA V+QMLKLP Sbjct: 24 MVLHLDVGREKSVRALEQAMVDDNQILLATQEEVHIEEPSAEQIFSVGTVARVKQMLKLP 83 Query: 61 NGTIRVLVEGVERAEIINYTDNEEYYEVMARVLPEEEDVDQQSDALMRTVLNQFEHYISL 120 NGTIRVLVEG++RA I Y +++++V L EE+ + + +ALMR VL+ FE YI L Sbjct: 84 NGTIRVLVEGLQRARIDEYIRQDDFFQVSITYLEEEKADENEVEALMRAVLSHFEQYIKL 143 Query: 121 SKKVTPETLAAVSDIEEPGRLADVITSHLALKIKDKQEILETIDVSKRLEKLLDIXXXXX 180 SKK++PE L +VSDIEEPGRLADVI SHL LK+KDKQEILET ++ +RL LLDI Sbjct: 144 SKKISPEALTSVSDIEEPGRLADVIASHLPLKMKDKQEILETTNIKERLNILLDILNNER 203 Query: 181 XXXXXXXKINQRVKKQMEKTQKEYYLREQMKAIQKELGDKEGR 223 KI+ RVKKQME+TQKEYYLREQMKAIQKELG+K+GR Sbjct: 204 EVLELERKISNRVKKQMERTQKEYYLREQMKAIQKELGEKDGR 246 >C0ZAG5.1 C0ZAG5_BREBN ATP-dependent protease La EC=3.4.21.53 Length = 779 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 146/223 (65%), Positives = 173/223 (77%) Query: 1 MVLHLDVGREKSVRALEKAMVEDNLILLCSQSEVNIEEPGQEDIFRVGTVANVRQMLKLP 60 MVLHLDVGREKS+RALE+AMV+DN ILL +Q EV+IEEP E I+R+GTVA V+QMLKLP Sbjct: 24 MVLHLDVGREKSIRALEQAMVDDNKILLATQEEVHIEEPDAEQIYRIGTVARVKQMLKLP 83 Query: 61 NGTIRVLVEGVERAEIINYTDNEEYYEVMARVLPEEEDVDQQSDALMRTVLNQFEHYISL 120 NGTIRVLVEG++RA+I Y E+Y+ V L +E+ + +ALMR++L FE YI L Sbjct: 84 NGTIRVLVEGLQRAKIEEYLQQEDYFVVSITYLQDEKTEQNEVEALMRSLLGHFEQYIKL 143 Query: 121 SKKVTPETLAAVSDIEEPGRLADVITSHLALKIKDKQEILETIDVSKRLEKLLDIXXXXX 180 SKKV+PE L +V DIEEPGRLADVI SHL LK+KDKQEILET ++ +RLE LL I Sbjct: 144 SKKVSPEALTSVQDIEEPGRLADVIASHLPLKMKDKQEILETTNIKERLEILLTILNNER 203 Query: 181 XXXXXXXKINQRVKKQMEKTQKEYYLREQMKAIQKELGDKEGR 223 KI RVKKQME+TQKEYYLREQMKAIQKELGDK+GR Sbjct: 204 EVLELERKIGNRVKKQMERTQKEYYLREQMKAIQKELGDKDGR 246 >A8FFV7.1 A8FFV7_BACP2 ATP-dependent protease La Length = 774 Score = 279 bits (714), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 135/224 (60%), Positives = 178/224 (79%) Query: 1 MVLHLDVGREKSVRALEKAMVEDNLILLCSQSEVNIEEPGQEDIFRVGTVANVRQMLKLP 60 MVLHLDVGREKSV+ALE+AM+ D++I L +Q E++I+EPG+E+IF+VGT ++QMLKLP Sbjct: 23 MVLHLDVGREKSVQALEQAMMNDHMIFLATQREISIDEPGEEEIFKVGTYTKIKQMLKLP 82 Query: 61 NGTIRVLVEGVERAEIINYTDNEEYYEVMARVLPEEEDVDQQSDALMRTVLNQFEHYISL 120 NGTIRVLVEG+ RA+I +Y + E+Y V + L EEE D +++ALMRT+L+ F+ YI + Sbjct: 83 NGTIRVLVEGLNRAQIESYVELEDYTSVDIKELAEEELKDAEAEALMRTLLDHFDQYIKI 142 Query: 121 SKKVTPETLAAVSDIEEPGRLADVITSHLALKIKDKQEILETIDVSKRLEKLLDIXXXXX 180 SKK++ ET A V+DIEEPGR+AD++ SHL LK+KDKQE+LET+DV KRL +++ + Sbjct: 143 SKKISAETYATVTDIEEPGRMADIVASHLPLKLKDKQEVLETVDVKKRLNRVISLIHNEK 202 Query: 181 XXXXXXXKINQRVKKQMEKTQKEYYLREQMKAIQKELGDKEGRA 224 KI QRVK+ ME+TQKEYYLREQMKAIQKELGDKEG+ Sbjct: 203 EVLEIEKKIGQRVKRSMERTQKEYYLREQMKAIQKELGDKEGKT 246 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.132 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,158,870,460 Number of extensions: 42239781 Number of successful extensions: 118252 Number of sequences better than 1.0e-05: 1399 Number of HSP's gapped: 117333 Number of HSP's successfully gapped: 1399 Length of query: 233 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 102 Effective length of database: 1,826,543,238 Effective search space: 186307410276 Effective search space used: 186307410276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)