BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0422.0011.p (221 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL05.1 B3KL05_9BACI Small GTP-binding protein 299 9e-80 B1DDT7.1 B1DDT7_9BACL Small GTP-binding protein 280 4e-74 Q2B6L8.1 Q2B6L8_9BACI GTP-binding protein 267 6e-70 A3IEW7.1 A3IEW7_9BACI GTP-binding protein 263 9e-69 A8UBF3.1 A8UBF3_9LACT GTP-binding protein 263 1e-68 >B3KL05.1 B3KL05_9BACI Small GTP-binding protein Length = 214 Score = 299 bits (766), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 137/192 (71%), Positives = 167/192 (86%) Query: 1 MKVNNAEFIISAVGPDQYPVDALPEIALAGRSNVGKSSLINRMINRKNLARTSSTPGKTQ 60 MKV AEF+ISAV P QYP DALPEIALAGRSNVGKSSLINRMI+RKNLARTS+TPGKTQ Sbjct: 1 MKVTKAEFVISAVVPAQYPEDALPEIALAGRSNVGKSSLINRMISRKNLARTSATPGKTQ 60 Query: 61 HMNYYRVNESMYFVDFPGYGYAKVSKTQRASWGKMVEKYLAERDTLKLVLLIVDLRHPPT 120 +NYYRVN+ +Y VDFPGYGYAKVSKTQRA++G+M+E+YL R+ LKLVLLIVD+RHPP+ Sbjct: 61 QLNYYRVNDDLYLVDFPGYGYAKVSKTQRAAFGEMIERYLLSREELKLVLLIVDMRHPPS 120 Query: 121 GNDKMMFDWLKHYDLPLCVVATKADKIPKTRWPKHIKIMKQELGVLPGDNFISFSSEIGL 180 +D M++WL+HY+ P+CVVATKADKIPKTR KH+KI+K+ LG P +F+ FSSE+GL Sbjct: 121 KDDISMYEWLQHYNRPVCVVATKADKIPKTRRQKHVKIVKETLGFKPYHSFVMFSSELGL 180 Query: 181 GRDELWELIERY 192 G+DELW ++E + Sbjct: 181 GKDELWAIMESH 192 >B1DDT7.1 B1DDT7_9BACL Small GTP-binding protein Length = 201 Score = 280 bits (717), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 126/189 (66%), Positives = 158/189 (83%) Query: 1 MKVNNAEFIISAVGPDQYPVDALPEIALAGRSNVGKSSLINRMINRKNLARTSSTPGKTQ 60 MK+ +EFIISAV P QYPVDALPEIALAGRSNVGKSSLIN++I RKNLARTSS PGKTQ Sbjct: 1 MKITQSEFIISAVRPSQYPVDALPEIALAGRSNVGKSSLINKLILRKNLARTSSQPGKTQ 60 Query: 61 HMNYYRVNESMYFVDFPGYGYAKVSKTQRASWGKMVEKYLAERDTLKLVLLIVDLRHPPT 120 +NYYRVN+ +YFVDFPGYGYAKVSKTQR +G+M+E Y+ +R LKL LL++D+RH P+ Sbjct: 61 QLNYYRVNDMVYFVDFPGYGYAKVSKTQRELFGQMIETYIRDRKELKLQLLVIDMRHAPS 120 Query: 121 GNDKMMFDWLKHYDLPLCVVATKADKIPKTRWPKHIKIMKQELGVLPGDNFISFSSEIGL 180 +D +M+ WLKHY++P C+V TKADKIPK +W KH+K++K+ L P D+ + FSSE GL Sbjct: 121 KDDVLMYHWLKHYNVPTCIVCTKADKIPKGKWDKHVKVIKETLEADPRDSLVMFSSETGL 180 Query: 181 GRDELWELI 189 GR++LWE+I Sbjct: 181 GREKLWEVI 189 >Q2B6L8.1 Q2B6L8_9BACI GTP-binding protein Length = 195 Score = 267 bits (682), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 121/195 (62%), Positives = 155/195 (79%) Query: 1 MKVNNAEFIISAVGPDQYPVDALPEIALAGRSNVGKSSLINRMINRKNLARTSSTPGKTQ 60 MKVN+AE +ISAV P QYP ++LPE ALAGRSNVGKSS IN+M+NRKNLARTSS PGKTQ Sbjct: 1 MKVNSAEIVISAVKPAQYPEESLPEFALAGRSNVGKSSFINKMLNRKNLARTSSKPGKTQ 60 Query: 61 HMNYYRVNESMYFVDFPGYGYAKVSKTQRASWGKMVEKYLAERDTLKLVLLIVDLRHPPT 120 +N+Y +NE M+FVD PGYGYAKVSK +R +WG+M+E Y R+ LK +LIVDLRHPPT Sbjct: 61 TLNFYLINEMMHFVDVPGYGYAKVSKKEREAWGRMIETYFTSREQLKAAVLIVDLRHPPT 120 Query: 121 GNDKMMFDWLKHYDLPLCVVATKADKIPKTRWPKHIKIMKQELGVLPGDNFISFSSEIGL 180 +D MM+D+LKH+ + ++ATKADKIPKT+ KH KI K+ L + PGD+ + FSSE G Sbjct: 121 KDDIMMYDFLKHHGIRCIIIATKADKIPKTKRQKHFKITKETLELEPGDDIVLFSSETGE 180 Query: 181 GRDELWELIERYNQA 195 G+DE W ++++Y Q+ Sbjct: 181 GKDEAWGILKKYMQS 195 >A3IEW7.1 A3IEW7_9BACI GTP-binding protein Length = 193 Score = 263 bits (672), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 121/190 (63%), Positives = 148/190 (77%) Query: 1 MKVNNAEFIISAVGPDQYPVDALPEIALAGRSNVGKSSLINRMINRKNLARTSSTPGKTQ 60 MKV+N E +ISAV PDQYP D LPE ALAGRSNVGKSS INRMI RK LAR SS PGKTQ Sbjct: 1 MKVHNVEMVISAVRPDQYPEDGLPEFALAGRSNVGKSSFINRMIGRKALARISSKPGKTQ 60 Query: 61 HMNYYRVNESMYFVDFPGYGYAKVSKTQRASWGKMVEKYLAERDTLKLVLLIVDLRHPPT 120 +N+Y++ E ++FVD PGYGYAKVSK++R +WGKM+E+Y R LK V+ I+DLRHPPT Sbjct: 61 TLNFYKIEEQLFFVDVPGYGYAKVSKSEREAWGKMIERYFTGRQELKAVVQIIDLRHPPT 120 Query: 121 GNDKMMFDWLKHYDLPLCVVATKADKIPKTRWPKHIKIMKQELGVLPGDNFISFSSEIGL 180 +D+MM+D+LKHY++P V+ATKADKIPK +W KH KI+K+ L + D I FSSE GL Sbjct: 121 ADDRMMYDFLKHYNIPCIVIATKADKIPKGKWDKHKKIVKETLEMEKNDPLIVFSSETGL 180 Query: 181 GRDELWELIE 190 G +E W IE Sbjct: 181 GFEEAWRTIE 190 >A8UBF3.1 A8UBF3_9LACT GTP-binding protein Length = 195 Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 121/192 (63%), Positives = 151/192 (78%) Query: 1 MKVNNAEFIISAVGPDQYPVDALPEIALAGRSNVGKSSLINRMINRKNLARTSSTPGKTQ 60 MKVN A+ +ISAV P QYP LPEIALAGRSNVGKSS IN MINRK LARTS PGKTQ Sbjct: 1 MKVNKADIVISAVSPAQYPSTGLPEIALAGRSNVGKSSFINTMINRKGLARTSGKPGKTQ 60 Query: 61 HMNYYRVNESMYFVDFPGYGYAKVSKTQRASWGKMVEKYLAERDTLKLVLLIVDLRHPPT 120 +NYY + +S YFVD PGYGYAKVSKT+RA WG+M+E Y +R+TLK+ L +VDLRHPPT Sbjct: 61 TLNYYIIEDSFYFVDVPGYGYAKVSKTERAKWGQMLEVYFTQRETLKVALSVVDLRHPPT 120 Query: 121 GNDKMMFDWLKHYDLPLCVVATKADKIPKTRWPKHIKIMKQELGVLPGDNFISFSSEIGL 180 +D M+++LK++ +P+ VVATKADKIP+ +W KHIKI+K +L + D+F+ FSSE G Sbjct: 121 EDDVQMYEFLKYHSIPVIVVATKADKIPRGKWNKHIKIVKDKLNIREEDHFVLFSSETGE 180 Query: 181 GRDELWELIERY 192 G+++ W LIE Y Sbjct: 181 GKEQAWSLIESY 192 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,302,699,156 Number of extensions: 49012198 Number of successful extensions: 155449 Number of sequences better than 1.0e-05: 1574 Number of HSP's gapped: 156635 Number of HSP's successfully gapped: 1575 Length of query: 221 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 90 Effective length of database: 1,826,543,238 Effective search space: 164388891420 Effective search space used: 164388891420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)